2E0Z
| Crystal structure of virus-like particle from Pyrococcus furiosus | Descriptor: | Virus-like particle | Authors: | Akita, F, Chong, K.T, Tanaka, H, Yamashita, E, Miyazaki, N, Nakaishi, Y, Namba, K, Ono, Y, Suzuki, M, Tsukihara, T, Nakagawa, A. | Deposit date: | 2006-10-16 | Release date: | 2007-04-17 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (3.6 Å) | Cite: | The Crystal Structure of a Virus-like Particle from the Hyperthermophilic Archaeon Pyrococcus furiosus Provides Insight into the Evolution of Viruses J.Mol.Biol., 368, 2007
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6L9C
| Neutron structure of copper amine oxidase from Arthrobacter glibiformis at pD 7.4 | Descriptor: | COPPER (II) ION, Phenylethylamine oxidase, SODIUM ION | Authors: | Murakawa, T, Kurihara, K, Shoji, M, Shibazaki, C, Sunami, T, Tamada, T, Yano, N, Yamada, T, Kusaka, K, Suzuki, M, Shigeta, Y, Kuroki, R, Hayashi, H, Yano, Y, Tanizawa, K, Adachi, M, Okajima, T. | Deposit date: | 2019-11-08 | Release date: | 2020-04-29 | Last modified: | 2023-11-22 | Method: | NEUTRON DIFFRACTION (1.14 Å), X-RAY DIFFRACTION | Cite: | Neutron crystallography of copper amine oxidase reveals keto/enolate interconversion of the quinone cofactor and unusual proton sharing. Proc.Natl.Acad.Sci.USA, 117, 2020
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5Y1A
| HBP35 of Porphyromonas gingivalis | Descriptor: | 35 kDa hemin binding protein | Authors: | Kakuda, S, Suzuki, M, Sato, K. | Deposit date: | 2017-07-20 | Release date: | 2018-07-25 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Immunoglobulin-like domains of the cargo proteins are essential for protein stability during secretion by the type IX secretion system. Mol. Microbiol., 110, 2018
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5WRC
| Crystal structure of proteinase K from Engyodontium album | Descriptor: | NITRATE ION, PRASEODYMIUM ION, Proteinase K | Authors: | Sugahara, M, Nakane, T, Suzuki, M, Masuda, T, Inoue, S, Numata, K. | Deposit date: | 2016-12-01 | Release date: | 2017-11-29 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Hydroxyethyl cellulose matrix applied to serial crystallography Sci Rep, 7, 2017
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5WRA
| Crystal structure of hen egg-white lysozyme | Descriptor: | CHLORIDE ION, Lysozyme C, SODIUM ION | Authors: | Sugahara, M, Suzuki, M, Masuda, T, Inoue, S, Nango, E. | Deposit date: | 2016-12-01 | Release date: | 2017-12-06 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (1.45 Å) | Cite: | Hydroxyethyl cellulose matrix applied to serial crystallography Sci Rep, 7, 2017
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5WRB
| Crystal structure of hen egg-white lysozyme | Descriptor: | CHLORIDE ION, Lysozyme C, SODIUM ION | Authors: | Sugahara, M, Suzuki, M, Masuda, T, Inoue, S, Nango, E. | Deposit date: | 2016-12-01 | Release date: | 2017-12-20 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (2.013 Å) | Cite: | Hydroxyethyl cellulose matrix applied to serial crystallography Sci Rep, 7, 2017
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5X9M
| Structure of hyper-sweet thaumatin (D21N) | Descriptor: | GLYCEROL, L(+)-TARTARIC ACID, Thaumatin I | Authors: | Masuda, T, Okubo, K, Sugahara, M, Suzuki, M, Mikami, B. | Deposit date: | 2017-03-08 | Release date: | 2018-03-14 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (0.93 Å) | Cite: | Subatomic structure of hyper-sweet thaumatin D21N mutant reveals the importance of flexible conformations for enhanced sweetness. Biochimie, 157, 2019
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5X9L
| Recombinant thaumatin I at 0.9 Angstrom | Descriptor: | GLYCEROL, L(+)-TARTARIC ACID, Thaumatin I | Authors: | Masuda, T, Okubo, K, Sugahara, M, Suzuki, M, Mikami, B. | Deposit date: | 2017-03-08 | Release date: | 2018-03-14 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (0.9 Å) | Cite: | Subatomic structure of hyper-sweet thaumatin D21N mutant reveals the importance of flexible conformations for enhanced sweetness. Biochimie, 157, 2019
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5YYP
| Structure K137A thaumatin | Descriptor: | GLYCEROL, L(+)-TARTARIC ACID, Preprothaumatin I | Authors: | Masuda, T, Kigo, S, Mitsumoto, M, Ohta, K, Suzuki, M, Mikami, B, Kitabatake, N, Tani, F. | Deposit date: | 2017-12-10 | Release date: | 2018-03-21 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.01 Å) | Cite: | Positive Charges on the Surface of Thaumatin Are Crucial for the Multi-Point Interaction with the Sweet Receptor. Front Mol Biosci, 5, 2018
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5YYQ
| Structure K78A thaumatin | Descriptor: | GLYCEROL, L(+)-TARTARIC ACID, Preprothaumatin I | Authors: | Masuda, T, Kigo, S, Mitsumoto, M, Ohta, K, Suzuki, M, Mikami, B, Kitabatake, N, Tani, F. | Deposit date: | 2017-12-10 | Release date: | 2018-03-21 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.07 Å) | Cite: | Positive Charges on the Surface of Thaumatin Are Crucial for the Multi-Point Interaction with the Sweet Receptor. Front Mol Biosci, 5, 2018
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5YYR
| Structure K106A thaumatin | Descriptor: | GLYCEROL, L(+)-TARTARIC ACID, Preprothaumatin I | Authors: | Masuda, T, Kigo, S, Ohta, K, Mitsumoto, M, Mikami, B, Suzuki, M, Kitabatake, N, Tani, F. | Deposit date: | 2017-12-10 | Release date: | 2018-03-21 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.07 Å) | Cite: | Positive Charges on the Surface of Thaumatin Are Crucial for the Multi-Point Interaction with the Sweet Receptor. Front Mol Biosci, 5, 2018
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6AD9
| Crystal Structure of PPARgamma Ligand Binding Domain in complex with dibenzooxepine derivative compound-9 | Descriptor: | 12-mer peptide from Peroxisome proliferator-activated receptor gamma coactivator 1-alpha, 3-[(1E)-1-{8-[(4-methyl-2-propyl-1H-benzimidazol-1-yl)methyl]dibenzo[b,e]oxepin-11(6H)-ylidene}ethyl]-1,2,4-oxadiazol-5(4H)-one, Peroxisome proliferator-activated receptor gamma | Authors: | Takahashi, Y, Suzuki, M, Yamamoto, K, Saito, J. | Deposit date: | 2018-07-31 | Release date: | 2018-11-14 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Development of Dihydrodibenzooxepine Peroxisome Proliferator-Activated Receptor (PPAR) Gamma Ligands of a Novel Binding Mode as Anticancer Agents: Effective Mimicry of Chiral Structures by Olefinic E/ Z-Isomers. J. Med. Chem., 61, 2018
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7W05
| 12 mutant Ribonuclease from Hericium erinaceus GMP binding form | Descriptor: | DI(HYDROXYETHYL)ETHER, GUANOSINE, Ribonuclease T1 | Authors: | Takebe, K, Chida, T, Suzuki, M, Itagaki, T, Morita, Y, Uzawa, N, Kobayashi, H. | Deposit date: | 2021-11-17 | Release date: | 2022-11-23 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.29 Å) | Cite: | 12 mutant Ribonuclease from Hericium erinaceus GMP binding form To Be Published
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7XJB
| Rat-COMT, opicapone,SAM and Mg bond | Descriptor: | CHLORIDE ION, Catechol O-methyltransferase, MAGNESIUM ION, ... | Authors: | Takebe, K, Iijima, H, Suzuki, M, Kuwada-Kusunose, T. | Deposit date: | 2022-04-15 | Release date: | 2023-05-31 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Structural and Computational Analyses of the Unique Interactions of Opicapone in the Binding Pocket of Catechol O -Methyltransferase: A Crystallographic Study and Fragment Molecular Orbital Analyses. J.Chem.Inf.Model., 63, 2023
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7XGI
| COMT SAH Mg opicapone complex | Descriptor: | Catechol O-methyltransferase, MAGNESIUM ION, Opicapone, ... | Authors: | Takebe, K, Kuwada-Kusunose, T, Suzuki, M, Iijima, H. | Deposit date: | 2022-04-04 | Release date: | 2023-04-12 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structural and Computational Analyses of the Unique Interactions of Opicapone in the Binding Pocket of Catechol O -Methyltransferase: A Crystallographic Study and Fragment Molecular Orbital Analyses. J.Chem.Inf.Model., 63, 2023
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3VWV
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3W8J
| Crystal structure of P5 a0 in a complex with Prx4 c-term | Descriptor: | C-terminal peptide from Peroxiredoxin-4, GLYCEROL, POTASSIUM ION, ... | Authors: | Inaba, K, Suzuki, M, Kojima, R. | Deposit date: | 2013-03-13 | Release date: | 2013-09-04 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Synergistic cooperation of PDI family members in peroxiredoxin 4-driven oxidative protein folding Sci Rep, 3, 2013
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2Z5P
| Apo-Fr with low content of Pd ions | Descriptor: | CADMIUM ION, Ferritin light chain, GLYCEROL, ... | Authors: | Ueno, T, Hirata, K, Abe, M, Suzuki, M, Abe, S, Shimizu, N, Yamamoto, M, Takata, M, Watanabe, Y. | Deposit date: | 2007-07-16 | Release date: | 2008-07-29 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Process of accumulation of metal ions on the interior surface of apo-ferritin: crystal structures of a series of apo-ferritins containing variable quantities of Pd(II) ions. J.Am.Chem.Soc., 131, 2009
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3WUM
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3WGE
| Crystal structure of ERp46 Trx2 | Descriptor: | GLYCEROL, Thioredoxin domain-containing protein 5 | Authors: | Inaba, K, Suzuki, M, Kojima, R. | Deposit date: | 2013-08-04 | Release date: | 2014-06-25 | Method: | X-RAY DIFFRACTION (0.95 Å) | Cite: | Radically different thioredoxin domain arrangement of ERp46, an efficient disulfide bond introducer of the mammalian PDI family Structure, 22, 2014
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3WXQ
| Serial femtosecond X-ray structure of human fatty acid-binding protein type-3 (FABP3) in complex with stearic acid (C18:0) determined using X-ray free-electron laser at SACLA | Descriptor: | Fatty acid-binding protein, heart, STEARIC ACID | Authors: | Mizohata, E, Suzuki, M, Kakinouchi, K, Sugiyama, S, Murata, M, Sugahara, M, Nango, E, Tanaka, T, Tanaka, R, Tono, K, Song, C, Hatsui, T, Joti, Y, Yabashi, M, Iwata, S. | Deposit date: | 2014-08-04 | Release date: | 2014-11-05 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Grease matrix as a versatile carrier of proteins for serial crystallography Nat. Methods, 12, 2015
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3WGD
| Crystal structure of ERp46 Trx1 | Descriptor: | GLYCEROL, PHOSPHATE ION, POTASSIUM ION, ... | Authors: | Inaba, K, Suzuki, M, Kojima, R. | Deposit date: | 2013-08-04 | Release date: | 2014-06-25 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Radically different thioredoxin domain arrangement of ERp46, an efficient disulfide bond introducer of the mammalian PDI family Structure, 22, 2014
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3WGX
| Crystal structure of ERp46 Trx2 in a complex with Prx4 C-term | Descriptor: | GLYCEROL, Peroxiredoxin-4, Thioredoxin domain-containing protein 5 | Authors: | Inaba, K, Suzuki, M, Kojima, R. | Deposit date: | 2013-08-13 | Release date: | 2014-06-25 | Method: | X-RAY DIFFRACTION (0.92 Å) | Cite: | Radically different thioredoxin domain arrangement of ERp46, an efficient disulfide bond introducer of the mammalian PDI family Structure, 22, 2014
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3WUL
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3WXS
| Thaumatin structure determined by SPring-8 Angstrom Compact free electron Laser (SACLA) | Descriptor: | L(+)-TARTARIC ACID, thaumatin I | Authors: | Masuda, T, Nango, E, Sugahara, M, Mizohata, E, Tanaka, T, Tanaka, R, Suzuki, M, Mikami, B, Iwata, S. | Deposit date: | 2014-08-07 | Release date: | 2014-11-05 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Grease matrix as a versatile carrier of proteins for serial crystallography Nat. Methods, 12, 2015
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