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Cryo-EM structure of SARS-CoV-2 Omicron KP.3.1.1 spike protein (closed state)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
Authors:	Feng, Z, Huang, J, Ward, A.B.
Deposit date:	2024-12-04
Release date:	2025-05-28
Last modified:	2025-07-16
Method:	ELECTRON MICROSCOPY (2.82 Å)
Cite:	Structural and functional insights into the evolution of SARS-CoV-2 KP.3.1.1 spike protein. Cell Rep, 44, 2025

5XRQ

Crystal structure of human monoclonal antibody H3v-47
Descriptor:	Fab H3v-47 heavy chain, Fab H3v-47 light chain
Authors:	Zhang, H, Willson, I.A.
Deposit date:	2017-06-09
Release date:	2018-07-25
Last modified:	2024-10-09
Method:	X-RAY DIFFRACTION (2.6 Å)
Cite:	A multifunctional human monoclonal neutralizing antibody that targets a unique conserved epitope on influenza HA. Nat Commun, 9, 2018

3YPI

ELECTROPHILIC CATALYSIS IN TRIOSEPHOSPHASE ISOMERASE: THE ROLE OF HISTIDINE-95
Descriptor:	PHOSPHOGLYCOLOHYDROXAMIC ACID, TRIOSEPHOSPHATE ISOMERASE
Authors:	Lolis, E, Petsko, G.A.
Deposit date:	1990-12-31
Release date:	1993-04-15
Last modified:	2024-02-28
Method:	X-RAY DIFFRACTION (2.8 Å)
Cite:	Electrophilic catalysis in triosephosphate isomerase: the role of histidine-95. Biochemistry, 30, 1991

8D0Z

S728-1157 IgG in complex with SARS-CoV-2-6P-Mut7 Spike protein (focused refinement)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, S728-1157 Fab heavy chain variable region, S728-1157 Fab light chain variable region, ...
Authors:	Ozorowski, G, Torres, J.L, Ward, A.B.
Deposit date:	2022-05-26
Release date:	2023-03-22
Last modified:	2024-10-23
Method:	ELECTRON MICROSCOPY (3.7 Å)
Cite:	Site of vulnerability on SARS-CoV-2 spike induces broadly protective antibody against antigenically distinct Omicron subvariants. J.Clin.Invest., 133, 2023

2OOK

Crystal structure of a protein with unknown function (YP_749275.1) from Shewanella Frigidimarina NCIMB 400 at 1.80 A resolution
Descriptor:	1,2-ETHANEDIOL, Hypothetical protein
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2007-01-25
Release date:	2007-02-06
Last modified:	2024-11-13
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Open and closed conformations of two SpoIIAA-like proteins (YP_749275.1 and YP_001095227.1) provide insights into membrane association and ligand binding. Acta Crystallogr.,Sect.F, 66, 2010

2OOC

Crystal structure of Histidine Phosphotransferase ShpA (NP_419930.1) from Caulobacter crescentus at 1.52 A resolution
Descriptor:	GLYCEROL, Histidine phosphotransferase, TETRAETHYLENE GLYCOL
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2007-01-25
Release date:	2007-02-06
Last modified:	2024-10-30
Method:	X-RAY DIFFRACTION (1.52 Å)
Cite:	Crystal structure of histidine phosphotransfer protein ShpA, an essential regulator of stalk biogenesis in Caulobacter crescentus. J.Mol.Biol., 390, 2009

2PV7

Crystal structure of chorismate mutase / prephenate dehydrogenase (tyrA) (1574749) from Haemophilus influenzae RD at 2.00 A resolution
Descriptor:	NICOTINAMIDE-ADENINE-DINUCLEOTIDE, T-protein [Includes: Chorismate mutase (EC 5.4.99.5) (CM) and Prephenate dehydrogenase (EC 1.3.1.12) (PDH)], TYROSINE
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2007-05-09
Release date:	2007-05-22
Last modified:	2024-11-20
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	The structure of Haemophilus influenzae prephenate dehydrogenase suggests unique features of bifunctional TyrA enzymes. Acta Crystallogr.,Sect.F, 66, 2010

2Q3L

CRYSTAL STRUCTURE OF AN UNCHARACTERIZED PROTEIN FROM DUF3478 FAMILY WITH A SPOIIAA-LIKE FOLD (SHEW_3102) FROM SHEWANELLA LOIHICA PV-4 AT 2.25 A RESOLUTION
Descriptor:	(4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, SODIUM ION, ...
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2007-05-30
Release date:	2007-06-12
Last modified:	2024-11-20
Method:	X-RAY DIFFRACTION (2.25 Å)
Cite:	Open and closed conformations of two SpoIIAA-like proteins (YP_749275.1 and YP_001095227.1) provide insights into membrane association and ligand binding. Acta Crystallogr.,Sect.F, 66, 2010

2Q86

Structure of the mouse invariant NKT cell receptor Valpha14
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, Valpha14 TCR, Vbeta8.2, ...
Authors:	Zajonc, D.M.
Deposit date:	2007-06-08
Release date:	2008-04-01
Last modified:	2024-11-06
Method:	X-RAY DIFFRACTION (1.85 Å)
Cite:	Crystal Structures of Mouse CD1d-iGb3 Complex and its Cognate Valpha14 T Cell Receptor Suggest a Model for Dual Recognition of Foreign and Self Glycolipids. J.Mol.Biol., 377, 2008

2Q8U

CRYSTAL STRUCTURE OF MRE11 FROM THERMOTOGA MARITIMA MSB8 (TM1635) AT 2.20 A RESOLUTION
Descriptor:	Exonuclease, putative
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2007-06-11
Release date:	2007-06-26
Last modified:	2024-10-30
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Crystal structure of the first eubacterial Mre11 nuclease reveals novel features that may discriminate substrates during DNA repair. J.Mol.Biol., 397, 2010

2Q83

Crystal structure of ytaA (2635576) from Bacillus subtilis at 2.50 A resolution
Descriptor:	1,2-ETHANEDIOL, ADENOSINE, CITRIC ACID, ...
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2007-06-08
Release date:	2007-06-26
Last modified:	2024-10-16
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Genomics, evolution, and crystal structure of a new family of bacterial spore kinases. Proteins, 78, 2010

2QAD

Structure of tyrosine-sulfated 412d antibody complexed with HIV-1 YU2 gp120 and CD4
Descriptor:	1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp160, ...
Authors:	Huang, C.-C, Tang, M, Robinson, J, Wyatt, R, Kwong, P.D.
Deposit date:	2007-06-14
Release date:	2007-09-25
Last modified:	2024-11-20
Method:	X-RAY DIFFRACTION (3.3 Å)
Cite:	Structures of the CCR5 N terminus and of a tyrosine-sulfated antibody with HIV-1 gp120 and CD4 Science, 317, 2007

3HSA

Crystal structure of pleckstrin homology domain (YP_926556.1) from SHEWANELLA AMAZONENSIS SB2B at 1.99 A resolution
Descriptor:	DI(HYDROXYETHYL)ETHER, GLYCEROL, pleckstrin homology domain
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2009-06-10
Release date:	2009-06-23
Last modified:	2023-02-01
Method:	X-RAY DIFFRACTION (1.99 Å)
Cite:	Bacterial pleckstrin homology domains: a prokaryotic origin for the PH domain. J.Mol.Biol., 396, 2010

3T2L

Crystal structure of a Putative cell adhesion protein (BF1858) from Bacteroides fragilis NCTC 9343 at 2.33 A resolution
Descriptor:	CHLORIDE ION, GLYCEROL, Putative cell adhesion protein
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2011-07-22
Release date:	2011-08-10
Last modified:	2024-10-16
Method:	X-RAY DIFFRACTION (2.33 Å)
Cite:	A Distinct Type of Pilus from the Human Microbiome. Cell, 165, 2016

3SY6

Crystal structure of a fimbrial protein BF1861 [Bacteroides fragilis NCTC 9343] (BF1861) from Bacteroides fragilis NCTC 9343 at 1.90 A resolution
Descriptor:	2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Fimbrial protein BF1861
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2011-07-15
Release date:	2011-08-24
Last modified:	2024-11-06
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	A Distinct Type of Pilus from the Human Microbiome. Cell, 165, 2016

3G23

Crystal structure of a ld-carboxypeptidase a (saro_1426) from novosphingobium aromaticivorans dsm at 1.89 A resolution
Descriptor:	GLYCEROL, LD-carboxypeptidase A, SULFATE ION, ...
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2009-01-30
Release date:	2009-02-10
Last modified:	2024-11-06
Method:	X-RAY DIFFRACTION (1.89 Å)
Cite:	Structure and function of a novel LD-carboxypeptidase a involved in peptidoglycan recycling. J.Bacteriol., 195, 2013

3UP6

Crystal structure of a putative cell adhesion protein (BACOVA_04078) from Bacteroides ovatus ATCC 8483 at 2.80 A resolution
Descriptor:	hypothetical protein BACOVA_04078
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2011-11-17
Release date:	2011-12-21
Last modified:	2024-11-06
Method:	X-RAY DIFFRACTION (2.8 Å)
Cite:	A Distinct Type of Pilus from the Human Microbiome. Cell, 165, 2016

3UWS

Crystal structure of a clostripain (PARMER_00083) from Parabacteroides merdae ATCC 43184 at 1.70 A resolution
Descriptor:	1,2-ETHANEDIOL, hypothetical protein
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2011-12-02
Release date:	2012-06-13
Last modified:	2024-10-30
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Crystal Structure and Activity Studies of the C11 Cysteine Peptidase from Parabacteroides merdae in the Human Gut Microbiome. J.Biol.Chem., 291, 2016

3HN7

Crystal structure of a murein peptide ligase mpl (psyc_0032) from psychrobacter arcticus 273-4 at 1.65 A resolution
Descriptor:	UDP-N-acetylmuramate-L-alanine ligase
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2009-05-29
Release date:	2009-06-16
Last modified:	2024-10-30
Method:	X-RAY DIFFRACTION (1.65 Å)
Cite:	Structure and function of the first full-length murein Peptide ligase (mpl) cell wall recycling protein. Plos One, 6, 2011

3H0N

Crystal structure of a duf1470 family protein (jann_2411) from jannaschia sp. ccs1 at 1.45 A resolution
Descriptor:	ACETATE ION, GLYCEROL, NICKEL (II) ION, ...
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2009-04-09
Release date:	2009-04-21
Last modified:	2024-11-20
Method:	X-RAY DIFFRACTION (1.45 Å)
Cite:	The structure of Jann_2411 (DUF1470) from Jannaschia sp. at 1.45 resolution reveals a new fold (the ABATE domain) and suggests its possible role as a transcription regulator. Acta Crystallogr.,Sect.F, 66, 2010

3GO5

Crystal structure of a multidomain protein with nucleic acid binding domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 A resolution
Descriptor:	1,2-ETHANEDIOL, CHLORIDE ION, Multidomain protein with S1 RNA-binding domains
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2009-03-18
Release date:	2009-04-07
Last modified:	2024-11-27
Method:	X-RAY DIFFRACTION (1.4 Å)
Cite:	Structure of a virulence regulatory factor CvfB reveals a novel winged helix RNA binding module. Structure, 18, 2010

3HBZ

Crystal structure of a putative glycoside hydrolase (bt_2081) from bacteroides thetaiotaomicron vpi-5482 at 2.05 A resolution
Descriptor:	ACETATE ION, CACODYLATE ION, CALCIUM ION, ...
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2009-05-05
Release date:	2009-05-26
Last modified:	2024-11-27
Method:	X-RAY DIFFRACTION (2.05 Å)
Cite:	Structure of Bacteroides thetaiotaomicron BT2081 at 2.05 A resolution: the first structural representative of a new protein family that may play a role in carbohydrate metabolism. Acta Crystallogr.,Sect.F, 66, 2010

3IRB

Crystal structure of protein with unknown function from DUF35 family (13815350) from SULFOLOBUS SOLFATARICUS at 1.80 A resolution
Descriptor:	ACETIC ACID, SULFATE ION, ZINC ION, ...
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2009-08-21
Release date:	2009-09-01
Last modified:	2024-11-06
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	The structure of SSO2064, the first representative of Pfam family PF01796, reveals a novel two-domain zinc-ribbon OB-fold architecture with a potential acyl-CoA-binding role. Acta Crystallogr.,Sect.F, 66, 2010

3G0T

Crystal structure of putative aspartate aminotransferase (NP_905498.1) from Porphyromonas gingivalis W83 at 1.75 A resolution
Descriptor:	1,2-ETHANEDIOL, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, CHLORIDE ION, ...
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2009-01-28
Release date:	2009-02-10
Last modified:	2023-02-01
Method:	X-RAY DIFFRACTION (1.75 Å)
Cite:	Molecular characterization of novel pyridoxal-5'-phosphate-dependent enzymes from the human microbiome. Protein Sci., 23, 2014

3TCL

Crystal Structure of HIV-1 Neutralizing Antibody CH04
Descriptor:	CH04 Heavy Chain Fab, CH04 Light Chain Fab, IMIDAZOLE
Authors:	Louder, R.K, McLellan, J.S, Pancera, M, Yang, Y, Zhang, B, Bonsignori, M, Kwong, P.D.
Deposit date:	2011-08-09
Release date:	2011-11-30
Last modified:	2024-10-30
Method:	X-RAY DIFFRACTION (1.906 Å)
Cite:	Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9. Nature, 480, 2011

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