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Histone H3 recognition and presentation by the WDR5 module of the MLL1 complex
Descriptor:	WD-repeat protein 5
Authors:	Ruthenburg, A.J, Wang, W.-K, Graybosch, D.M, Li, H, Allis, C.D, Patel, D.J, Verdine, G.L.
Deposit date:	2006-05-30
Release date:	2006-07-04
Last modified:	2023-08-30
Method:	X-RAY DIFFRACTION (1.79 Å)
Cite:	Histone H3 recognition and presentation by the WDR5 module of the MLL1 complex. Nat.Struct.Mol.Biol., 13, 2006

2H6K

Histone H3 recognition and presentation by the WDR5 module of the MLL1 complex
Descriptor:	Histone H3 K4-Me 9-residue peptide, WD-repeat protein 5
Authors:	Ruthenburg, A.J, Wang, W.-K, Graybosch, D.M, Li, H, Allis, C.D, Patel, D.J, Verdine, G.L.
Deposit date:	2006-05-31
Release date:	2006-07-04
Last modified:	2023-08-30
Method:	X-RAY DIFFRACTION (1.89 Å)
Cite:	Histone H3 recognition and presentation by the WDR5 module of the MLL1 complex. Nat.Struct.Mol.Biol., 13, 2006

3SOX

Structure of UHRF1 PHD finger in the free form
Descriptor:	E3 ubiquitin-protein ligase UHRF1, ZINC ION
Authors:	Rajakumara, E, Patel, D.J.
Deposit date:	2011-06-30
Release date:	2011-08-03
Last modified:	2023-09-13
Method:	X-RAY DIFFRACTION (2.6501 Å)
Cite:	PHD Finger Recognition of Unmodified Histone H3R2 Links UHRF1 to Regulation of Euchromatic Gene Expression. Mol.Cell, 43, 2011

2F6N

Crystal structure of PHD finger-linker-bromodomain fragment of human BPTF in the free form
Descriptor:	ZINC ION, bromodomain PHD finger transcription factor
Authors:	Li, H, Patel, D.J.
Deposit date:	2005-11-29
Release date:	2006-07-11
Last modified:	2024-10-09
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature, 442, 2006

3U5O

Crystal structure of the complex of TRIM33 PHD-Bromo and H3(1-22)K9me3K14acK18ac histone peptide
Descriptor:	E3 ubiquitin-protein ligase TRIM33, Histone H3.1, ZINC ION
Authors:	Wang, Z, Patel, D.J.
Deposit date:	2011-10-11
Release date:	2012-01-18
Last modified:	2023-12-06
Method:	X-RAY DIFFRACTION (2.7 Å)
Cite:	A poised chromatin platform for TGF-beta access to master regulators Cell(Cambridge,Mass.), 147, 2011

2F8S

Crystal structure of Aa-Ago with externally-bound siRNA
Descriptor:	5'-R(PAPGPAPCPAPGPCPAPUPAPUPAPUPGPCPUPGPUPCPUPUPU)-3', Argonaute protein
Authors:	Yuan, Y.R, Chen, H.Y, Patel, D.J.
Deposit date:	2005-12-03
Release date:	2006-10-31
Last modified:	2023-08-30
Method:	X-RAY DIFFRACTION (3 Å)
Cite:	A Potential Protein-RNA Recognition Event along the RISC-Loading Pathway from the Structure of A. aeolicus Argonaute with Externally Bound siRNA. Structure, 14, 2006

3U5P

Crystal structure of the complex of TRIM33 PHD-Bromo and H3(1-28)K9me3K14acK18acK23ac histone peptide
Descriptor:	E3 ubiquitin-protein ligase TRIM33, Histone H3.1, ZINC ION
Authors:	Wang, Z, Patel, D.J.
Deposit date:	2011-10-11
Release date:	2012-01-18
Last modified:	2023-12-06
Method:	X-RAY DIFFRACTION (2.8 Å)
Cite:	A poised chromatin platform for TGF-beta access to master regulators Cell(Cambridge,Mass.), 147, 2011

3U5N

Crystal structure of the complex of TRIM33 PHD-Bromo and H3(1-20)K9me3K14ac histone peptide
Descriptor:	E3 ubiquitin-protein ligase TRIM33, Histone H3.1, ZINC ION
Authors:	Wang, Z, Patel, D.J.
Deposit date:	2011-10-11
Release date:	2012-01-18
Last modified:	2023-12-06
Method:	X-RAY DIFFRACTION (1.95 Å)
Cite:	A Poised Chromatin Platform for TGF-beta access to master regulators Cell(Cambridge,Mass.), 147, 2011

2EUK

Crystal Structure of Human Glycolipid Transfer Protein complexed with 24:1 Galactosylceramide
Descriptor:	(15E)-TETRACOS-15-ENOIC ACID, Glycolipid transfer protein, N-OCTANE, ...
Authors:	Malinina, L, Malakhova, M.L, Kanack, A.T, Abagyan, R, Brown, R.E, Patel, D.J.
Deposit date:	2005-10-28
Release date:	2006-11-14
Last modified:	2023-08-23
Method:	X-RAY DIFFRACTION (1.85 Å)
Cite:	The liganding of glycolipid transfer protein is controlled by glycolipid acyl structure. Plos Biol., 4, 2006

2EVT

Crystal structure of D48V mutant of human Glycolipid Transfer Protein
Descriptor:	Glycolipid transfer protein, HEXANE
Authors:	Malinina, L, Malakhova, M.L, Teplov, A, Brown, R.E, Patel, D.J.
Deposit date:	2005-10-31
Release date:	2005-11-15
Last modified:	2023-08-23
Method:	X-RAY DIFFRACTION (1.99 Å)
Cite:	The liganding of glycolipid transfer protein is controlled by glycolipid acyl structure. Plos Biol., 4, 2006

2H6N

Histone H3 recognition and presentation by the WDR5 module of the MLL1 complex
Descriptor:	Histone H3 K4-Me2 9-residue peptide, WD-repeat protein 5
Authors:	Ruthenburg, A.J, Wang, W.-K, Graybosch, D.M, Li, H, Allis, C.D, Patel, D.J, Verdine, G.L.
Deposit date:	2006-05-31
Release date:	2006-07-04
Last modified:	2023-08-30
Method:	X-RAY DIFFRACTION (1.5 Å)
Cite:	Histone H3 recognition and presentation by the WDR5 module of the MLL1 complex. Nat.Struct.Mol.Biol., 13, 2006

3UIJ

Crystal structure of human Survivin K62Y/H80W mutant in complex with Smac/DIABLO(1-15) peptide
Descriptor:	Baculoviral IAP repeat-containing protein 5, Diablo homolog, mitochondrial, ...
Authors:	Du, J, Patel, D.J.
Deposit date:	2011-11-04
Release date:	2012-02-01
Last modified:	2023-09-13
Method:	X-RAY DIFFRACTION (2.705 Å)
Cite:	Structural Basis for Recognition of H3T3ph and Smac/DIABLO N-terminal Peptides by Human Survivin. Structure, 20, 2012

3UIK

crystal structure of human Survivin mutant K62Y/H80W in complex with H3(1-10) peptide
Descriptor:	Baculoviral IAP repeat-containing protein 5, ZINC ION, histone H3(1-10) peptide
Authors:	Du, J, Patel, D.J.
Deposit date:	2011-11-04
Release date:	2012-02-01
Last modified:	2023-09-13
Method:	X-RAY DIFFRACTION (2.701 Å)
Cite:	Structural Basis for Recognition of H3T3ph and Smac/DIABLO N-terminal Peptides by Human Survivin. Structure, 20, 2012

3UIH

crystal structure of human Survivin in complex with Smac/DIABLO(1-15) peptide
Descriptor:	Baculoviral IAP repeat-containing protein 5, Diablo homolog, mitochondrial, ...
Authors:	Du, J, Patel, D.J.
Deposit date:	2011-11-04
Release date:	2012-02-01
Last modified:	2023-09-13
Method:	X-RAY DIFFRACTION (2.4 Å)
Cite:	Structural Basis for Recognition of H3T3ph and Smac/DIABLO N-terminal Peptides by Human Survivin. Structure, 20, 2012

5U33

Crystal structure of AacC2c1-sgRNA-extended non-target DNA ternary complex
Descriptor:	CRISPR-associated endonuclease C2c1, Non-target DNA strand, SULFATE ION, ...
Authors:	Yang, H, Gao, P, Rajashankar, K.R, Patel, D.J.
Deposit date:	2016-12-01
Release date:	2017-01-25
Last modified:	2023-10-04
Method:	X-RAY DIFFRACTION (3.75 Å)
Cite:	PAM-Dependent Target DNA Recognition and Cleavage by C2c1 CRISPR-Cas Endonuclease. Cell, 167, 2016

5VW1

Crystal structure of SpyCas9-sgRNA-AcrIIA4 ternary complex
Descriptor:	1,2-ETHANEDIOL, CRISPR-associated endonuclease Cas9/Csn1, DI(HYDROXYETHYL)ETHER, ...
Authors:	Yang, H, Patel, D.J.
Deposit date:	2017-05-21
Release date:	2017-06-28
Last modified:	2023-10-04
Method:	X-RAY DIFFRACTION (2.598 Å)
Cite:	Inhibition Mechanism of an Anti-CRISPR Suppressor AcrIIA4 Targeting SpyCas9. Mol. Cell, 67, 2017

4YB0

3',3'-cGAMP riboswitch bound with c-di-GMP
Descriptor:	9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:	Ren, A.M, Patel, D.J, Rajashankar, R.K.
Deposit date:	2015-02-18
Release date:	2015-04-15
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (2.121 Å)
Cite:	Structural Basis for Molecular Discrimination by a 3',3'-cGAMP Sensing Riboswitch. Cell Rep, 11, 2015

4YAZ

3',3'-cGAMP riboswitch bound with 3',3'-cGAMP
Descriptor:	2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one, MAGNESIUM ION, POTASSIUM ION, ...
Authors:	Ren, A.M, Patel, D.J, Rajashankar, R.K.
Deposit date:	2015-02-18
Release date:	2015-04-15
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Structural Basis for Molecular Discrimination by a 3',3'-cGAMP Sensing Riboswitch. Cell Rep, 11, 2015

4YB1

20A Mutant c-di-GMP Vc2 Riboswitch bound with 3',3'-cGAMP
Descriptor:	2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one, MAGNESIUM ION, RNA (91-MER), ...
Authors:	Ren, A.M, Patel, D.J, Rajashankar, R.K.
Deposit date:	2015-02-18
Release date:	2015-04-15
Last modified:	2024-02-28
Method:	X-RAY DIFFRACTION (2.081 Å)
Cite:	Structural Basis for Molecular Discrimination by a 3',3'-cGAMP Sensing Riboswitch. Cell Rep, 11, 2015

3CZ3

Crystal structure of Tomato Aspermy Virus 2b in complex with siRNA
Descriptor:	Protein 2b, RNA (5'-R(PCPGPUPAPCPGPCPGPGPAPAPUPAPCPUPUPCPGPA)-3'), RNA (5'-R(PUPCPGPAPAPGPUPAPUPUPCPCPGPCPGPUPAPCPG)-3')
Authors:	Ma, J.B, Li, F, Ding, S.W, Patel, D.J.
Deposit date:	2008-04-27
Release date:	2009-05-05
Last modified:	2024-02-21
Method:	X-RAY DIFFRACTION (3.23 Å)
Cite:	Structural Basis for siRNA Recognition by 2b, a Viral Suppressor of Non-Cell Autonomous RNA Silencing To be Published

3D2N

Crystal structure of MBNL1 tandem zinc finger 1 and 2 domain
Descriptor:	Muscleblind-like protein 1, ZINC ION
Authors:	Teplova, M, Patel, D.J.
Deposit date:	2008-05-08
Release date:	2008-12-02
Last modified:	2024-02-21
Method:	X-RAY DIFFRACTION (2.7 Å)
Cite:	Structural insights into RNA recognition by the alternative-splicing regulator muscleblind-like MBNL1. Nat.Struct.Mol.Biol., 15, 2008

3D2S

Crystal structure of MBNL1 tandem zinc finger 3 and 4 domain in complex with CGCUGU RNA
Descriptor:	5'-R(CPGPCPUPGPU)-3', Muscleblind-like protein 1, ZINC ION
Authors:	Teplova, M, Patel, D.J.
Deposit date:	2008-05-08
Release date:	2008-12-02
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Structural insights into RNA recognition by the alternative-splicing regulator muscleblind-like MBNL1. Nat.Struct.Mol.Biol., 15, 2008

3D2Q

Crystal structure of MBNL1 tandem zinc finger 3 and 4 domain
Descriptor:	Muscleblind-like protein 1, ZINC ION
Authors:	Teplova, M, Patel, D.J.
Deposit date:	2008-05-08
Release date:	2008-12-02
Last modified:	2024-02-21
Method:	X-RAY DIFFRACTION (1.5 Å)
Cite:	Structural insights into RNA recognition by the alternative-splicing regulator muscleblind-like MBNL1. Nat.Struct.Mol.Biol., 15, 2008

149D

SOLUTION STRUCTURE OF A PYRIMIDINE(DOT)PURINE(DOT) PYRIMIDINE DNA TRIPLEX CONTAINING T(DOT)AT, C+(DOT)GC AND G(DOT)TA TRIPLES
Descriptor:	5'-D(CPCPTPAPTPTPC)-3', 5'-D(CPTPTPGPTPCPC)-3', 5'-D(GPAPAPTPAPGP*G)-3'
Authors:	Radhakrishnan, I, Patel, D.J.
Deposit date:	1993-11-15
Release date:	1994-04-30
Last modified:	2024-05-22
Method:	SOLUTION NMR
Cite:	Solution structure of a pyrimidine.purine.pyrimidine DNA triplex containing T.AT, C+.GC and G.TA triples. Structure, 2, 1994

136D

SOLUTION STRUCTURE OF A PURINE(DOT)PURINE(DOT)PYRIMIDINE DNA TRIPLEX CONTAINING G(DOT)GC AND T(DOT)AT TRIPLES
Descriptor:	DNA TRIPLEX
Authors:	Radhakrishnan, I, Patel, D.J.
Deposit date:	1993-08-30
Release date:	1994-04-30
Last modified:	2024-05-22
Method:	SOLUTION NMR
Cite:	Solution structure of a purine.purine.pyrimidine DNA triplex containing G.GC and T.AT triples. Structure, 1, 1993

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