Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6XP5
DownloadVisualize
BU of 6xp5 by Molmil
Head-Middle module of Mediator
Descriptor: HEAT, Med22, Mediator of RNA polymerase II transcription subunit 1, ...
Authors:Zhang, H.Q, Chen, D.C, Kornberg, R.D.
Deposit date:2020-07-08
Release date:2021-03-03
Last modified:2025-05-21
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Mediator structure and conformation change.
Mol.Cell, 81, 2021
3RBQ
DownloadVisualize
BU of 3rbq by Molmil
Co-crystal structure of human UNC119 (retina gene 4) and an N-terminal Transducin-alpha mimicking peptide
Descriptor: Guanine nucleotide-binding protein G(t) subunit alpha-1, Protein unc-119 homolog A
Authors:Constantine, R, Whitby, F.G, Hill, C.P, Baehr, W.
Deposit date:2011-03-29
Release date:2011-06-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:UNC119 is required for G protein trafficking in sensory neurons.
Nat.Neurosci., 14, 2011
7XLB
DownloadVisualize
BU of 7xlb by Molmil
Cryo-EM structure of human pannexin 2
Descriptor: Pannexin-2
Authors:Hang, Z, Huawei, Z, Daping, W.
Deposit date:2022-04-21
Release date:2023-03-15
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.44 Å)
Cite:Cryo-EM structure of human heptameric pannexin 2 channel
Nat Commun, 14, 2023
6WNK
DownloadVisualize
BU of 6wnk by Molmil
Macrocyclic peptides TDI5575 that selectively inhibit the Mycobacterium tuberculosis proteasome
Descriptor: (12S,15S)-N-[(2-fluorophenyl)methyl]-10,13-dioxo-12-{2-oxo-2-[(2R)-2-phenylpyrrolidin-1-yl]ethyl}-2-oxa-11,14-diazatricyclo[15.2.2.1~3,7~]docosa-1(19),3(22),4,6,17,20-hexaene-15-carboxamide, CITRIC ACID, DIMETHYLFORMAMIDE, ...
Authors:Hsu, H.C, Li, H.
Deposit date:2020-04-22
Release date:2021-04-28
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Macrocyclic Peptides that Selectively Inhibit the Mycobacterium tuberculosis Proteasome.
J.Med.Chem., 64, 2021
7PZJ
DownloadVisualize
BU of 7pzj by Molmil
Structure of a bacteroidetal polyethylene terephthalate (PET) esterase
Descriptor: Lipase, POTASSIUM ION
Authors:Zang, H, Dierkes, R, Perez-Garcia, P, Weigert, S, Sternagel, S, Hallam, S.J, Applegate, V, Schumacher, J, Schott, T, Pleiss, J, Almeida, A, Hoecker, B, Smits, S.H, Schmitz, R.A, Chow, J, Streit, W.R.
Deposit date:2021-10-12
Release date:2022-03-02
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Bacteroidetes Aequorivita sp. and Kaistella jeonii Produce Promiscuous Esterases With PET-Hydrolyzing Activity.
Front Microbiol, 12, 2021
8WFX
DownloadVisualize
BU of 8wfx by Molmil
Cryo-EM structure of CRISPR-Csm effector complex from Mycobacterium canettii
Descriptor: CRISPR system Cms endoribonuclease Csm3, CRISPR system Cms protein Csm2, CRISPR system Cms protein Csm4, ...
Authors:Huo, Y, Ma, X, Jiang, T.
Deposit date:2023-09-20
Release date:2024-07-31
Method:ELECTRON MICROSCOPY (3.73 Å)
Cite:Type-III-A structure of mycobacteria CRISPR-Csm complexes involving atypical crRNAs.
Int.J.Biol.Macromol., 260, 2024
5K23
DownloadVisualize
BU of 5k23 by Molmil
Crystal structure of the complex between human phosphatase PRL-2 in the oxidized state with the Bateman domain of human magnesium transporter CNNM3
Descriptor: Metal transporter CNNM3, Protein tyrosine phosphatase type IVA 2
Authors:Gulerez, I, Kozlov, G, Gehring, K.
Deposit date:2016-05-18
Release date:2016-10-12
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.96 Å)
Cite:PRL3 phosphatase active site is required for binding the putative magnesium transporter CNNM3.
Sci Rep, 7, 2017
5YH3
DownloadVisualize
BU of 5yh3 by Molmil
The structure of hFam20C and hFam20A complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Extracellular serine/threonine protein kinase FAM20C, Pseudokinase FAM20A
Authors:Zhu, Q, Xiao, J.
Deposit date:2017-09-27
Release date:2018-04-25
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure and evolution of the Fam20 kinases
Nat Commun, 9, 2018
5U1J
DownloadVisualize
BU of 5u1j by Molmil
Structure of pNOB8 ParA bound to nonspecific DNA
Descriptor: DNA (5'-D(*CP*GP*TP*GP*TP*AP*AP*TP*GP*AP*CP*GP*CP*CP*GP*GP*CP*GP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*CP*GP*CP*CP*GP*GP*CP*GP*TP*CP*AP*TP*GP*AP*CP*AP*CP*G)-3'), PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Schumacher, M.A.
Deposit date:2016-11-28
Release date:2017-04-19
Last modified:2024-09-25
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structures of partition protein ParA with nonspecific DNA and ParB effector reveal molecular insights into principles governing Walker-box DNA segregation.
Genes Dev., 31, 2017
5U1G
DownloadVisualize
BU of 5u1g by Molmil
Structure of TP228 ParA-AMPPNP-ParB complex
Descriptor: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ParA, TP228 ParB fragment
Authors:Schumacher, M.A.
Deposit date:2016-11-28
Release date:2017-04-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.64 Å)
Cite:Structures of partition protein ParA with nonspecific DNA and ParB effector reveal molecular insights into principles governing Walker-box DNA segregation.
Genes Dev., 31, 2017
4B5D
DownloadVisualize
BU of 4b5d by Molmil
Capitella teleta AChBP in complex with psychonicline (3-((2(S)- Azetidinyl)methoxy)-5-((1S,2R)-2-(2-hydroxyethyl)cyclopropyl)pyridine)
Descriptor: 2-[(1R,2S)-2-[5-[[(2S)-azetidin-2-yl]methoxy]pyridin-3-yl]cyclopropyl]ethanol, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Nys, M, Ulens, C.
Deposit date:2012-08-03
Release date:2012-09-26
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.195 Å)
Cite:Insights Into the Structural Determinants Required for High- Affinity Binding of Chiral Cyclopropane-Containing Ligands to Alpha4Beta2-Nicotinic Acetylcholine Receptors: An Integrated Approach to Behaviorally Active Nicotinic Ligands.
J.Med.Chem., 55, 2012
8HYJ
DownloadVisualize
BU of 8hyj by Molmil
A cryo-EM structure of KTF1-bound polymerase V transcription elongation complex
Descriptor: DNA (48-MER), DNA-directed RNA polymerase V subunit 1, DNA-directed RNA polymerase V subunit 5A, ...
Authors:Zhang, H, Zhang, Y.
Deposit date:2023-01-06
Release date:2023-06-21
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:A cryo-EM structure of KTF1-bound polymerase V transcription elongation complex.
Nat Commun, 14, 2023
5WYS
DownloadVisualize
BU of 5wys by Molmil
luciferase with inhibitor 3i
Descriptor: 5-[(3R)-3-(4-boranylphenyl)-3-oxidanyl-propyl]-2-oxidanyl-benzoic acid, Luciferin 4-monooxygenase
Authors:Gu, L, Su, J, Wang, F.
Deposit date:2017-01-15
Release date:2017-12-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.999 Å)
Cite:Inhibiting Firefly Bioluminescence by Chalcones
Anal. Chem., 89, 2017
6JYV
DownloadVisualize
BU of 6jyv by Molmil
Structure of an isopenicillin N synthase from Pseudomonas aeruginosa PAO1
Descriptor: Probable iron/ascorbate oxidoreductase, SODIUM ION
Authors:Hao, Z, Che, S, Wang, R, Liu, R, Zhang, Q, Bartlam, M.
Deposit date:2019-04-28
Release date:2019-05-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.651 Å)
Cite:Structural characterization of an isopenicillin N synthase family oxygenase from Pseudomonas aeruginosa PAO1.
Biochem.Biophys.Res.Commun., 514, 2019
8X73
DownloadVisualize
BU of 8x73 by Molmil
Crystal structure of Peroxiredoxin I in complex with compound 19-069
Descriptor: Peroxiredoxin-1, methyl (2~{S})-2-[[(2~{R},4~{a}~{S},6~{a}~{R},6~{a}~{S},14~{a}~{S},14~{b}~{R})-2,4~{a},6~{a},6~{a},9,14~{a}-hexamethyl-10-oxidanyl-11-oxidanylidene-1,3,4,5,6,13,14,14~{b}-octahydropicen-2-yl]carbamoylamino]-3-oxidanyl-propanoate
Authors:Zhang, H, Luo, C.
Deposit date:2023-11-22
Release date:2024-06-19
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Discovery of a Novel Orally Bioavailable FLT3-PROTAC Degrader for Efficient Treatment of Acute Myeloid Leukemia and Overcoming Resistance of FLT3 Inhibitors.
J.Med.Chem., 67, 2024
8X71
DownloadVisualize
BU of 8x71 by Molmil
Crystal structure of Peroxiredoxin I in complex with compound 19-064
Descriptor: Peroxiredoxin-1, methyl 3-[[(2~{R},4~{a}~{S},6~{a}~{R},6~{a}~{S},14~{a}~{S},14~{b}~{R})-2,4~{a},6~{a},6~{a},9,14~{a}-hexamethyl-10-oxidanyl-11-oxidanylidene-1,3,4,5,6,13,14,14~{b}-octahydropicen-2-yl]carbamoylamino]oxetane-3-carboxylate
Authors:Zhang, H, Luo, C.
Deposit date:2023-11-22
Release date:2024-06-19
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Discovery of a Novel Orally Bioavailable FLT3-PROTAC Degrader for Efficient Treatment of Acute Myeloid Leukemia and Overcoming Resistance of FLT3 Inhibitors.
J.Med.Chem., 67, 2024
8JQJ
DownloadVisualize
BU of 8jqj by Molmil
Crystal structure of carbonyl reductase SSCR mutant 1 from Sporobolomyces Salmonicolor
Descriptor: Aldehyde reductase 2
Authors:Zhang, H.L, Li, Q, Liu, W.D, Chen, X, Wu, Q.Q, Zhu, D.M.
Deposit date:2023-06-14
Release date:2023-12-27
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Engineering a Carbonyl Reductase to Simultaneously Increase Activity Toward Bulky Ketone and Isopropanol for Dynamic Kinetic Asymmetric Reduction via Enzymatic Hydrogen Transfer
Acs Catalysis, 13, 2023
8JQK
DownloadVisualize
BU of 8jqk by Molmil
Crystal structure of a carbonyl reductase SSCR mutant from Sporobolomyces Salmonicolor
Descriptor: Aldehyde reductase 2
Authors:Zhang, H.L, Li, Q, Liu, W.D, Chen, X, Wu, Q.Q, Zhu, D.M.
Deposit date:2023-06-14
Release date:2023-12-27
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Engineering a Carbonyl Reductase to Simultaneously Increase Activity Toward Bulky Ketone and Isopropanol for Dynamic Kinetic Asymmetric Reduction via Enzymatic Hydrogen Transfer
Acs Catalysis, 13, 2023
7EBO
DownloadVisualize
BU of 7ebo by Molmil
Crystal structure of a feruloyl esterase LP_0796 from Lactobacillus plantarum
Descriptor: Carboxylesterase, SULFATE ION
Authors:Zhang, H.W, Wang, Y.L, Xin, F.J.
Deposit date:2021-03-10
Release date:2022-08-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A reverse catalytic triad Asp containing loop shaping a wide substrate binding pocket of a feruloyl esterase from Lactobacillus plantarum.
Int.J.Biol.Macromol., 184, 2021
7W1M
DownloadVisualize
BU of 7w1m by Molmil
Cryo-EM structure of human cohesin-CTCF-DNA complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Cohesin subunit SA-1, ...
Authors:Shi, Z.B, Bai, X.C, Yu, H.
Deposit date:2021-11-19
Release date:2023-05-31
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (6.5 Å)
Cite:CTCF and R-loops are boundaries of cohesin-mediated DNA looping.
Mol.Cell, 83, 2023
8JB4
DownloadVisualize
BU of 8jb4 by Molmil
lipopolysaccharide-binding domain-LBDB
Descriptor: Antilipopolysaccharide factor D
Authors:Huang, J, Qin, Z.
Deposit date:2023-05-08
Release date:2024-03-13
Last modified:2025-03-19
Method:SOLUTION NMR
Cite:Machine learning and genetic algorithm-guided directed evolution for the development of antimicrobial peptides.
J Adv Res, 68, 2025
7F4W
DownloadVisualize
BU of 7f4w by Molmil
Complex structure of HLA2402 with recognizing SARS-CoV-2 epitope pep4
Descriptor: Beta-2-microglobulin, MHC class I antigen, SARS-CoV-2 T-cell Epitope pep4
Authors:Deng, S, Jin, T.
Deposit date:2021-06-21
Release date:2021-08-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Profiling CD8 + T cell epitopes of COVID-19 convalescents reveals reduced cellular immune responses to SARS-CoV-2 variants.
Cell Rep, 36, 2021
7EU2
DownloadVisualize
BU of 7eu2 by Molmil
Complex structure of HLA0201 with recognizing SARS-CoV-2 epitope S1
Descriptor: Beta-2-microglobulin, MHC class I antigen, SARS-CoV-2 T-cell Epitope S1
Authors:Deng, S, Jin, T.
Deposit date:2021-05-15
Release date:2021-08-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Profiling CD8 + T cell epitopes of COVID-19 convalescents reveals reduced cellular immune responses to SARS-CoV-2 variants.
Cell Rep, 36, 2021
3D04
DownloadVisualize
BU of 3d04 by Molmil
Crystal structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase (FabZ) from Helicobacter pylori in complex with sakuranetin
Descriptor: (2S)-5-hydroxy-2-(4-hydroxyphenyl)-7-methoxy-2,3-dihydro-4H-chromen-4-one, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase, BENZAMIDINE, ...
Authors:Zhang, L, Kong, Y, Wu, D, Shen, X, Jiang, H.
Deposit date:2008-05-01
Release date:2008-12-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Three flavonoids targeting the beta-hydroxyacyl-acyl carrier protein dehydratase from Helicobacter pylori: crystal structure characterization with enzymatic inhibition assay
Protein Sci., 17, 2008
6FBV
DownloadVisualize
BU of 6fbv by Molmil
Single particle cryo em structure of Mycobacterium tuberculosis RNA polymerase in complex with Fidaxomicin
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Das, K, Lin, W, Ebright, E.
Deposit date:2017-12-19
Release date:2018-02-28
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.52 Å)
Cite:Structural Basis of Transcription Inhibition by Fidaxomicin (Lipiarmycin A3).
Mol. Cell, 70, 2018

238582

数据于2025-07-09公开中

PDB statisticsPDBj update infoContact PDBjnumon