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4TV7
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BU of 4tv7 by Molmil
Crystal structure of Bacillus subtilis GabR at 2.05 Angstroms resolution
Descriptor: HTH-type transcriptional regulatory protein GabR
Authors:Goto, M, Okuda, K, Yoshimura, T.
Deposit date:2014-06-26
Release date:2014-12-24
Last modified:2020-01-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Role of the aminotransferase domain in Bacillus subtilis GabR, a pyridoxal 5'-phosphate-dependent transcriptional regulator
Mol. Microbiol., 95, 2015
2YXZ
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BU of 2yxz by Molmil
Crystal structure of tt0281 from Thermus thermophilus HB8
Descriptor: Thiamin-monophosphate kinase
Authors:Goto, M.
Deposit date:2007-04-27
Release date:2008-04-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of tt0281 from Thermus thermophilus HB8
to be published
5AVO
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BU of 5avo by Molmil
Crystal structure of the reduced form of homoserine dehydrogenase from Sulfolobus tokodaii.
Descriptor: Homoserine dehydrogenase
Authors:Goto, M, Yoshimune, K, Kaneko, R.
Deposit date:2015-06-25
Release date:2015-11-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insight into activation of homoserine dehydrogenase from the archaeonSulfolobus tokodaiivia reduction.
Biochem Biophys Rep, 3, 2015
8HR3
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BU of 8hr3 by Molmil
[D-Cys5,Asp7,Val8,D-Lys16]-STp(5-17)
Descriptor: DCY-CYS-ASP-VAL-CYS-CYS-ASN-PRO-ALA-CYS-ALA-DLY-CYS
Authors:Shimamoto, S, Hidaka, Y, Yoshino, S, Goto, M.
Deposit date:2022-12-14
Release date:2023-09-20
Method:SOLUTION NMR
Cite:The Molecular Basis of Heat-Stable Enterotoxin for Vaccine Development and Cancer Cell Detection.
Molecules, 28, 2023
8HR4
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BU of 8hr4 by Molmil
[D-Cys5,D-Lys16]-STp(5-17)
Descriptor: DCY-CYS-GLU-LEU-CYS-CYS-ASN-PRO-ALA-CYS-ALA-DLY-CYS
Authors:Shimamoto, S, Hidaka, Y, Yoshino, S, Goto, M.
Deposit date:2022-12-14
Release date:2023-12-20
Method:SOLUTION NMR
Cite:The molecular basis of heat-stable enterotoxin for vaccine development and cancer cell detection
To Be Published
4YDR
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BU of 4ydr by Molmil
Crystal structure of oxidized homoserine dehydrogenase of Sulfolobus tokodaii
Descriptor: Homoserine dehydrogenase, SODIUM ION
Authors:Goto, M, Yoshimune, K, Kaneko, R.
Deposit date:2015-02-23
Release date:2015-11-11
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural insight into activation of homoserine dehydrogenase from the archaeonSulfolobus tokodaiivia reduction.
Biochem Biophys Rep, 3, 2015
1IYD
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BU of 1iyd by Molmil
CRYSTAL STRUCTURE OF ESCHELICHIA COLI BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE
Descriptor: BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE, GLUTARIC ACID, PYRIDOXAL-5'-PHOSPHATE
Authors:Hirotsu, K, Goto, M.
Deposit date:2002-08-07
Release date:2003-05-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structures of branched-chain amino Acid aminotransferase complexed with glutamate and glutarate: true reaction intermediate and double substrate recognition of the enzyme.
Biochemistry, 42, 2003
1X2A
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BU of 1x2a by Molmil
Crystal Structure of e.coli AspAT complexed with N-phosphopyridoxyl-D-glutamic acid
Descriptor: Aspartate aminotransferase, N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-D-GLUTAMIC ACID
Authors:Goto, M.
Deposit date:2005-04-21
Release date:2005-06-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Binding of C5-dicarboxylic substrate to aspartate aminotransferase: implications for the conformational change at the transaldimination step.
Biochemistry, 44, 2005
1X28
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BU of 1x28 by Molmil
Crystal Structure of e.coli AspAT complexed with N-phosphopyridoxyl-L-glutamic acid
Descriptor: Aspartate aminotransferase, N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-glutamic acid
Authors:Goto, M.
Deposit date:2005-04-21
Release date:2005-06-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Binding of C5-dicarboxylic substrate to aspartate aminotransferase: implications for the conformational change at the transaldimination step.
Biochemistry, 44, 2005
1X29
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BU of 1x29 by Molmil
Crystal Structure of e.coli AspAT complexed with N-phosphopyridoxyl-2-methyl-L-glutamic acid
Descriptor: Aspartate aminotransferase, N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-2-METHYL-L-GLUTAMIC ACID
Authors:Goto, M.
Deposit date:2005-04-21
Release date:2005-06-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Binding of C5-dicarboxylic substrate to aspartate aminotransferase: implications for the conformational change at the transaldimination step.
Biochemistry, 44, 2005
1IYE
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BU of 1iye by Molmil
CRYSTAL STRUCTURE OF ESCHELICHIA COLI BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE
Descriptor: BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE, N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-glutamic acid
Authors:Hirotsu, K, Goto, M.
Deposit date:2002-08-07
Release date:2003-05-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Crystal structures of branched-chain amino Acid aminotransferase complexed with glutamate and glutarate: true reaction intermediate and double substrate recognition of the enzyme.
Biochemistry, 42, 2003
5X9D
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BU of 5x9d by Molmil
Crystal structure of homoserine dehydrogenase in complex with L-cysteine and NAD
Descriptor: (2R)-3-[[(4S)-3-aminocarbonyl-1-[(2R,3R,4S,5R)-5-[[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-3,4-bis(oxidanyl)oxolan-2-yl]-4H-pyridin-4-yl]sulfanyl]-2-azanyl-propanoic acid, Homoserine dehydrogenase, L(+)-TARTARIC ACID
Authors:Goto, M, Ogata, K, Kaneko, R, Yoshimune, K.
Deposit date:2017-03-06
Release date:2018-05-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Inhibition of homoserine dehydrogenase by formation of a cysteine-NAD covalent complex
Sci Rep, 8, 2018
2ZPU
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BU of 2zpu by Molmil
Crystal Structure of Modified Serine Racemase from S.pombe.
Descriptor: MAGNESIUM ION, N-(5'-PHOSPHOPYRIDOXYL)-D-ALANINE, Uncharacterized protein C320.14
Authors:Goto, M.
Deposit date:2008-07-29
Release date:2009-04-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Serine racemase with catalytically active lysinoalanyl residue.
J.Biochem., 145, 2009
3AB7
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BU of 3ab7 by Molmil
Crystal Structure of the Hypothetical Tandem-type Universal Stress Protein TTHA0350 from Thermus thermophilus HB8
Descriptor: Putative uncharacterized protein TTHA0350
Authors:Goto, M, Iino, H, Shimizu, N, Kuramitsu, S.
Deposit date:2009-12-01
Release date:2010-12-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Crystal Structure of the Hypothetical Tandem-type Universal Stress Protein TTHA0350 from Thermus thermophilus HB8
To be Published
3AB8
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BU of 3ab8 by Molmil
Crystal Structure of the Hypothetical Tandem-type Universal Stress Protein TTHA0350 complexed with ATPs.
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Putative uncharacterized protein TTHA0350
Authors:Goto, M, Iino, H, Shimizu, N, Kuramitsu, S.
Deposit date:2009-12-01
Release date:2010-12-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of the Hypothetical Tandem-type Universal Stress Protein TTHA0350 from Thermus thermophilus HB8
To be Published
2DKJ
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BU of 2dkj by Molmil
Crystal Structure of T.th.HB8 Serine Hydroxymethyltransferase
Descriptor: PYRIDOXAL-5'-PHOSPHATE, SULFATE ION, serine hydroxymethyltransferase
Authors:Kai, K, Goto, M, Miyahara, I, Hirotsu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-04-11
Release date:2007-04-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Crystal Structure of T.th.HB8 Serine Hydroxymethyltransferase
To be Published
7YQA
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BU of 7yqa by Molmil
Crystal structure of D-threonine aldolase from Chlamydomonas reinhardtii
Descriptor: D-threonine aldolase, MAGNESIUM ION
Authors:Hirato, Y, Goto, M, Mizobuchi, T, Muramatsu, H, Tanigawa, M, Nishimura, K.
Deposit date:2022-08-05
Release date:2023-02-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of pyridoxal 5'-phosphate-bound D-threonine aldolase from Chlamydomonas reinhardtii.
Acta Crystallogr.,Sect.F, 79, 2023
7COK
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BU of 7cok by Molmil
Crystal structure of ligand-free form of 5-ketofructose reductase of Gluconobacter sp. strain CHM43
Descriptor: 5-ketofructose reductase
Authors:Noda, S, Hodoya, Y, Nguyen, T.M, Kataoka, N, Adachi, O, Matsutani, M, Matsushita, K, Yakushi, T, Goto, M.
Deposit date:2020-08-04
Release date:2021-08-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The 5-Ketofructose Reductase of Gluconobacter sp. Strain CHM43 Is a Novel Class in the Shikimate Dehydrogenase Family.
J.Bacteriol., 203, 2021
7COL
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BU of 7col by Molmil
Crystal structure of 5-ketofructose reductase complexed with NADPH
Descriptor: 5-ketofructose reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Hodoya, Y, Noda, S, Nguyen, T.M, Kataoka, N, Adachi, O, Matsutani, M, Matsushita, K, Yakushi, T, Goto, M.
Deposit date:2020-08-04
Release date:2021-08-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The 5-Ketofructose Reductase of Gluconobacter sp. Strain CHM43 Is a Novel Class in the Shikimate Dehydrogenase Family.
J.Bacteriol., 203, 2021
7F4B
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BU of 7f4b by Molmil
The crystal structure of the immature apo-enzyme of homoserine dehydrogenase from the hyperthermophilic archaeon Sulfurisphaera tokodaii.
Descriptor: MAGNESIUM ION, homoserine dehydrogenase
Authors:Kurihara, E, Kubota, T, Watanabe, K, Ogata, K, Kaneko, R, Oshima, T, Yoshimune, K, Goto, M.
Deposit date:2021-06-18
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Conformational changes in the catalytic region are responsible for heat-induced activation of hyperthermophilic homoserine dehydrogenase.
Commun Biol, 5, 2022
7F4C
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BU of 7f4c by Molmil
The crystal structure of the immature holo-enzyme of homoserine dehydrogenase complexed with NADP and 1,4-butandiol from the hyperthermophilic archaeon Sulfurisphaera tokodaii.
Descriptor: 1,4-BUTANEDIOL, Homoserine dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Ogata, K, Kaneko, R, Kubota, T, Watanabe, K, Kurihara, E, Oshima, T, Yoshimune, K, Goto, M.
Deposit date:2021-06-18
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Conformational changes in the catalytic region are responsible for heat-induced activation of hyperthermophilic homoserine dehydrogenase.
Commun Biol, 5, 2022
7CT4
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BU of 7ct4 by Molmil
Crystal structure of D-amino acid oxidase from Rasamsonia emersonii strain YA
Descriptor: D-amino acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Shimekake, Y, Hirato, Y, Okazaki, S, Funabashi, R, Goto, M, Furuichi, T, Suzuki, H, Takahashi, S.
Deposit date:2020-08-18
Release date:2020-11-11
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray structure analysis of a unique D-amino-acid oxidase from the thermophilic fungus Rasamsonia emersonii strain YA.
Acta Crystallogr.,Sect.F, 76, 2020
1WKG
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BU of 1wkg by Molmil
Acetylornithine aminotransferase from thermus thermophilus HB8
Descriptor: Acetylornithine/acetyl-lysine aminotransferase, N~2~-ACETYL-N~5~-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-ORNITHINE
Authors:Matsumura, M, Goto, M, Omi, R, Miyahara, I, Hirotsu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-31
Release date:2005-09-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Acetylornithine aminotransferase from thermus thermophilus HB8
To be Published
1WKH
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BU of 1wkh by Molmil
Acetylornithine aminotransferase from thermus thermophilus HB8
Descriptor: 4-[(1,3-DICARBOXY-PROPYLAMINO)-METHYL]-3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDINIUM, Acetylornithine/acetyl-lysine aminotransferase
Authors:Matsumura, M, Goto, M, Omi, R, Miyahara, I, Hirotsu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-31
Release date:2005-09-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Acetylornithine aminotransferase from thermus thermophilus HB8
To be Published
6IUE
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BU of 6iue by Molmil
DNA helical wire containing Hg(II)
Descriptor: DNA (5'-D(*TP*TP*TP*GP*C)-3'), MERCURY (II) ION
Authors:Ono, A, Kanazawa, H, Ito, H, Goto, M, Nakamura, K, Saneyoshi, H, Kondo, J.
Deposit date:2018-11-28
Release date:2019-10-16
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:A Novel DNA Helical Wire Containing HgII-Mediated T:T and T:G Pairs.
Angew.Chem.Int.Ed.Engl., 58, 2019

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数据于2024-07-17公开中

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