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CryoEM Structure of Computationally Designed Nanocage O32-ZL4
Descriptor:	O32-ZL4 Component A, O32-ZL4 Component B, SODIUM ION
Authors:	Weidle, C, Borst, A.
Deposit date:	2023-05-30
Release date:	2023-11-01
Last modified:	2023-12-27
Method:	ELECTRON MICROSCOPY (2.9 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

6P8M

Crystal Structure of Antibody P-p3b3 A60C Heavy Chain in Complex with 426c HIV-1 gp120 core G459C
Descriptor:	1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, AMMONIUM ION, ...
Authors:	Weidle, C, Pancera, M.
Deposit date:	2019-06-07
Release date:	2019-11-20
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (3.594 Å)
Cite:	Overcoming Steric Restrictions of VRC01 HIV-1 Neutralizing Antibodies through Immunization. Cell Rep, 29, 2019

6P8N

Crystal Structure of Antibody P-p1f1 in Complex with eOD-GT8
Descriptor:	1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, AMMONIUM ION, ...
Authors:	Weidle, C, Pancera, M.
Deposit date:	2019-06-07
Release date:	2019-11-20
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (3.202 Å)
Cite:	Overcoming Steric Restrictions of VRC01 HIV-1 Neutralizing Antibodies through Immunization. Cell Rep, 29, 2019

6VLW

Crystal Structure of 426cOD in Complex with VRC01 Fab
Descriptor:	1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 426cOD, ...
Authors:	Weidle, C, Pancera, M.
Deposit date:	2020-01-27
Release date:	2020-12-09
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (3.42 Å)
Cite:	HIV-1 VRC01 Germline-Targeting Immunogens Select Distinct Epitope-Specific B Cell Receptors. Immunity, 53, 2020

2N0K

Chemical shift assignments and structure of the alpha-crystallin domain from human, HSPB5
Descriptor:	Alpha-crystallin B chain
Authors:	Rajagopal, P, Klevit, R.E, Shi, L, Baker, D.
Deposit date:	2015-03-09
Release date:	2015-06-03
Last modified:	2024-05-15
Method:	SOLUTION NMR
Cite:	A conserved histidine modulates HSPB5 structure to trigger chaperone activity in response to stress-related acidosis. Elife, 4, 2015

7U2Q

Influenza Neuraminidase N1-CA09-sNAp-155
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, Influenza N1-CA09-sNAp-155
Authors:	Acton, O.J, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:	2022-02-24
Release date:	2022-04-20
Method:	ELECTRON MICROSCOPY (3.2 Å)
Cite:	Structure-based design of stabilized recombinant influenza neuraminidase tetramers. Nat Commun, 13, 2022

7U2T

Influenza Neuraminidase N1-MI15-sNAp-174
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, Influenza N1-MI15-sNAp-174
Authors:	Acton, O.J, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:	2022-02-24
Release date:	2022-04-20
Method:	ELECTRON MICROSCOPY (3.25 Å)
Cite:	Structure-based design of stabilized recombinant influenza neuraminidase tetramers. Nat Commun, 13, 2022

8FBO

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_102
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.4 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FAR

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	I432-1-CC
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-11-28
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (3.66 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8GEL

Cryo-EM structure of synthetic tetrameric building block sC4
Descriptor:	sC4
Authors:	Redler, R.L, Huddy, T.F, Hsia, Y, Baker, D, Ekiert, D, Bhabha, G.
Deposit date:	2023-03-07
Release date:	2024-03-13
Last modified:	2024-04-10
Method:	ELECTRON MICROSCOPY (3.9 Å)
Cite:	Blueprinting extendable nanomaterials with standardized protein blocks. Nature, 627, 2024

8GA7

Geometrically programmable nanomaterial construction using regularized protein building blocks
Descriptor:	THR5
Authors:	Huddy, T, Bera, A.K, Baker, D, Kang, A.
Deposit date:	2023-02-22
Release date:	2024-03-13
Last modified:	2024-04-10
Method:	X-RAY DIFFRACTION (2.93 Å)
Cite:	Blueprinting extendable nanomaterials with standardized protein blocks. Nature, 627, 2024

8G9J

Geometrically programmable nanomaterial construction using regularized protein building blocks
Descriptor:	THR1
Authors:	Huddy, T, Bera, A.K, Baker, D.
Deposit date:	2023-02-21
Release date:	2024-03-13
Last modified:	2024-04-10
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Blueprinting extendable nanomaterials with standardized protein blocks. Nature, 627, 2024

8FBJ

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_60
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.25 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FBN

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_73
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.04 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FBI

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_39
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.61 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FBK

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_65
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.15 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8GA6

Geometrically programmable nanomaterial construction using regularized protein building blocks
Descriptor:	THR6
Authors:	Huddy, T, Bera, A.K, Baker, D, Kang, A.
Deposit date:	2023-02-22
Release date:	2024-03-13
Last modified:	2024-04-10
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Blueprinting extendable nanomaterials with standardized protein blocks. Nature, 627, 2024

8G9K

Geometrically programmable nanomaterial construction using regularized protein building blocks
Descriptor:	THR2
Authors:	Bera, A.K, Huddy, T, Baker, D, Kang, A.
Deposit date:	2023-02-21
Release date:	2024-03-13
Last modified:	2024-04-10
Method:	X-RAY DIFFRACTION (2.48 Å)
Cite:	Blueprinting extendable nanomaterials with standardized protein blocks. Nature, 627, 2024

8E1E

Scaffolding protein functional sites using deep learning
Descriptor:	SG122_C3
Authors:	Bera, A.K, Gerben, S, Baker, D.
Deposit date:	2022-08-10
Release date:	2023-08-16
Method:	X-RAY DIFFRACTION (4.27 Å)
Cite:	Design of Diverse Asymmetric Pockets in De Novo Homo-oligomeric Proteins. Biochemistry, 62, 2023

8CUS

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	I432-1(NaCl) Chain A, I432-1(NaCl) Chain B
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-05-17
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (3.98 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CUT

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	I432-1(Imd) Chain A, I432-1(Imd) Chain B
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-05-17
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (4 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CUW

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	F4132-1-3 Chain A, F4132-1-3 Chain B
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-05-17
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (3.55 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CUX

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	R3-1 Chain B
Authors:	Bera, A.K, Natterman, U, Baker, D.
Deposit date:	2022-05-17
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (1.85 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CWZ

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	I432-1-X3 Chain A, I432-1-X3 Chain B
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-05-19
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (5.53 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CWS

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	F4132-2 Chain A, F4132-2 Chain B
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-05-19
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (4.4 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

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