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7EK6
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BU of 7ek6 by Molmil
Structure of viral peptides IPB19/N52
Descriptor: Spike protein S2
Authors:Yu, D, Qin, B, Cui, S, He, Y.
Deposit date:2021-04-04
Release date:2021-06-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.243 Å)
Cite:Structure-based design and characterization of novel fusion-inhibitory lipopeptides against SARS-CoV-2 and emerging variants.
Emerg Microbes Infect, 10, 2021
7WHW
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BU of 7whw by Molmil
Cryo-EM structure of Dnf1 from Saccharomyces cerevisiae in detergent with AMPPCP (E1-ATP state)
Descriptor: Alkylphosphocholine resistance protein LEM3, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
Authors:Xu, J, He, Y, Wu, X, Li, L.
Deposit date:2021-12-31
Release date:2022-03-23
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Conformational changes of a phosphatidylcholine flippase in lipid membranes.
Cell Rep, 38, 2022
7WHV
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BU of 7whv by Molmil
Cryo-EM structure of Dnf1 from Saccharomyces cerevisiae in detergent with beryllium fluoride (E2P state)
Descriptor: (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE, Alkylphosphocholine resistance protein LEM3, BERYLLIUM TRIFLUORIDE ION, ...
Authors:Xu, J, He, Y, Wu, X, Li, L.
Deposit date:2021-12-31
Release date:2022-03-23
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Conformational changes of a phosphatidylcholine flippase in lipid membranes.
Cell Rep, 38, 2022
7DSH
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BU of 7dsh by Molmil
Cryo-EM structure of Dnf1 from Saccharomyces cerevisiae in 90PS with AMPPCP (E1-ATP state)
Descriptor: Alkylphosphocholine resistance protein LEM3, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
Authors:Xu, J, He, Y, Wu, X, Li, L.
Deposit date:2020-12-31
Release date:2022-03-23
Last modified:2025-06-25
Method:ELECTRON MICROSCOPY (3.67 Å)
Cite:Conformational changes of a phosphatidylcholine flippase in lipid membranes.
Cell Rep, 38, 2022
7DSI
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BU of 7dsi by Molmil
Cryo-EM structure of Dnf1 from Saccharomyces cerevisiae in yeast lipids with AMPPCP ( resting state )
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose, Alkylphosphocholine resistance protein LEM3, ...
Authors:Xu, J, He, Y, Wu, X, Li, L.
Deposit date:2020-12-31
Release date:2022-03-23
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Conformational changes of a phosphatidylcholine flippase in lipid membranes.
Cell Rep, 38, 2022
7DRX
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BU of 7drx by Molmil
Cryo-EM structure of Dnf1 from Saccharomyces cerevisiae in 90PS with beryllium fluoride (E2P state)
Descriptor: (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE, Alkylphosphocholine resistance protein LEM3, BERYLLIUM TRIFLUORIDE ION, ...
Authors:Xu, J, He, Y, Wu, X, Li, L.
Deposit date:2020-12-30
Release date:2022-03-23
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Conformational changes of a phosphatidylcholine flippase in lipid membranes.
Cell Rep, 38, 2022
7YVR
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BU of 7yvr by Molmil
Crystal Structure of L-Threonine Aldolase from Neptunomonas marina
Descriptor: GLYCEROL, L-threonine aldolase
Authors:He, Y.Z, Wang, J, Yan, W.P, Zhang, Y, Feng, Y.
Deposit date:2022-08-19
Release date:2023-05-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Discovery and Engineering of the L-Threonine Aldolase from Neptunomonas marine for the Efficient Synthesis of beta-Hydroxy-alpha-amino Acids via C-C Formation
Acs Catalysis, 2023
5K0M
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BU of 5k0m by Molmil
Targeting the PRC2 complex through a novel protein-protein interaction inhibitor of EED
Descriptor: (3R,4S)-1-[(1S)-7-fluoro-2,3-dihydro-1H-inden-1-yl]-N,N-dimethyl-4-{4-[4-(methylsulfonyl)piperazin-1-yl]phenyl}pyrrolidin-3-amine, Polycomb protein EED
Authors:Jakob, C.G, Bigelow, L.J, Zhu, H, Sun, C.
Deposit date:2016-05-17
Release date:2017-01-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:The EED protein-protein interaction inhibitor A-395 inactivates the PRC2 complex.
Nat. Chem. Biol., 13, 2017
7PRM
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BU of 7prm by Molmil
CRYSTAL STRUCTURE OF HUMAN MONOGLYCERIDE LIPASE WITH COMPOUND 13
Descriptor: (4~{R})-1-[4-(4-fluorophenyl)phenyl]-4-[4-(furan-2-ylcarbonyl)piperazin-1-yl]pyrrolidin-2-one, 1,2-ETHANEDIOL, Monoglyceride lipase
Authors:Grether, U, Gobbi, L, Kuhn, B, Collin, L, Leibrock, L, Heer, D, Wittwer, M, Benz, J.
Deposit date:2021-09-22
Release date:2022-02-16
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Development of High Brain-Penetrant and Reversible Monoacylglycerol Lipase PET Tracers for Neuroimaging.
J.Med.Chem., 65, 2022
5ZFT
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BU of 5zft by Molmil
Crystal structure of beta-lactamase PenP mutant-E166Y in complex with cephaloridine as "pre-deacylation" intermediate
Descriptor: 5-METHYL-2-[2-OXO-1-(2-THIOPHEN-2-YL-ACETYLAMINO)-ETHYL]-3,6-DIHYDRO-2H-[1,3]THIAZINE-4-CARBOXYLIC ACID, Beta-lactamase
Authors:Pan, X, Zhao, Y.
Deposit date:2018-03-07
Release date:2019-03-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:The hydrolytic water molecule of Class A beta-lactamase relies on the acyl-enzyme intermediate ES* for proper coordination and catalysis.
Sci Rep, 10, 2020
5ZFL
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BU of 5zfl by Molmil
Crystal structure of beta-lactamase PenP mutant E166Y
Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Beta-lactamase
Authors:Pan, X, Zhao, Y.
Deposit date:2018-03-06
Release date:2019-03-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The hydrolytic water molecule of Class A beta-lactamase relies on the acyl-enzyme intermediate ES* for proper coordination and catalysis.
Sci Rep, 10, 2020
5ZG6
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BU of 5zg6 by Molmil
Crystal structure of beta-lactamase PenP mutant-E166Y in complex with cephaloridine as "post-acylation" intermediate
Descriptor: 5-METHYL-2-[2-OXO-1-(2-THIOPHEN-2-YL-ACETYLAMINO)-ETHYL]-3,6-DIHYDRO-2H-[1,3]THIAZINE-4-CARBOXYLIC ACID, Beta-lactamase
Authors:Pan, X, Zhao, Y.
Deposit date:2018-03-07
Release date:2019-03-20
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The hydrolytic water molecule of Class A beta-lactamase relies on the acyl-enzyme intermediate ES* for proper coordination and catalysis.
Sci Rep, 10, 2020
8BAL
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BU of 8bal by Molmil
Niako3494, a bacterial protein structure in glycoside hydrolase family 20
Descriptor: Beta-N-acetylhexosaminidase, ZINC ION
Authors:Dong, M.D, Roth, C.R, Jin, Y.J.
Deposit date:2022-10-11
Release date:2023-01-11
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Mechanistic and Structural Insights into the Specificity and Biological Functions of Bacterial Sulfoglycosidases
Acs Catalysis, 2022
8BBL
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BU of 8bbl by Molmil
SGL a GH20 family sulfoglycosidase
Descriptor: Beta-N-acetylhexosaminidase
Authors:Dong, M.D, Roth, C.R, Jin, Y.J.
Deposit date:2022-10-13
Release date:2023-01-11
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.711 Å)
Cite:Mechanistic and Structural Insights into the Specificity and Biological Functions of Bacterial Sulfoglycosidases
Acs Catalysis, 2022
8HVS
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BU of 8hvs by Molmil
Solution Structure of the Antimicrobial Peptide HT-2
Descriptor: ARG-PHE-LEU-ARG-ARG-ILE-PHE-PHE-PHE-PHE
Authors:Li, S, Yang, A.
Deposit date:2022-12-27
Release date:2023-10-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Design and evaluation of tadpole-like conformational antimicrobial peptides.
Commun Biol, 6, 2023
5CRL
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BU of 5crl by Molmil
Crystal Structure of the Transcription Activator Tn501 MerR in Complex with Mercury (II)
Descriptor: MERCURY (II) ION, Mercuric resistance operon regulatory protein
Authors:Wang, D, Gan, J.H, Chen, H.
Deposit date:2015-07-23
Release date:2016-09-07
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural Analysis of the Hg(II)-Regulatory Protein Tn501 MerR from Pseudomonas aeruginosa.
Sci Rep, 6, 2016
5XHR
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BU of 5xhr by Molmil
Crystal structure of P99 beta-lactamase in complex with a penicillin derivative MPC-1
Descriptor: (2~{R},4~{S})-5,5-dimethyl-2-[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-5-thiophen-2-yl-pentan-2-yl]-1,3-thiazolidine-4-carboxylic acid, Beta-lactamase
Authors:Pan, X, Zhao, Y.
Deposit date:2017-04-24
Release date:2017-09-27
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Modified Penicillin Molecule with Carbapenem-Like Stereochemistry Specifically Inhibits Class C beta-Lactamases
Antimicrob. Agents Chemother., 61, 2017
7F7E
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BU of 7f7e by Molmil
SARS-CoV-2 S protein RBD in complex with A5-10 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of A5-10 Fab, Light chain of A5-10 Fab, ...
Authors:Dou, Y, Wang, X, Wang, K, Liu, P, Lu, B.
Deposit date:2021-06-29
Release date:2022-02-02
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Etesevimab in combination with JS026 neutralizing SARS-CoV-2 and its variants.
Emerg Microbes Infect, 11, 2022
5HV1
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BU of 5hv1 by Molmil
Rifampin phosphotransferase in complex with AMPPNP and rifampin from Listeria monocytogenes
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Phosphoenolpyruvate synthase, ...
Authors:Zhang, P, Qi, X.
Deposit date:2016-01-28
Release date:2016-03-30
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.103 Å)
Cite:Structural basis of rifampin inactivation by rifampin phosphotransferase
Proc.Natl.Acad.Sci.USA, 113, 2016
5HV6
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BU of 5hv6 by Molmil
The ATP binding domain of rifampin phosphotransferase from Listeria monocytogenes
Descriptor: Phosphoenolpyruvate synthase
Authors:Zhang, P, Qi, X.
Deposit date:2016-01-28
Release date:2016-03-30
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.005 Å)
Cite:Structural basis of rifampin inactivation by rifampin phosphotransferase
Proc.Natl.Acad.Sci.USA, 113, 2016
5HV3
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BU of 5hv3 by Molmil
Rifampin phosphotransferase G527Y mutant in complex with AMPPNP from Listeria monocytogenes
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Phosphoenolpyruvate synthase
Authors:Zhang, P, Qi, X.
Deposit date:2016-01-28
Release date:2016-03-30
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.118 Å)
Cite:Structural basis of rifampin inactivation by rifampin phosphotransferase
Proc.Natl.Acad.Sci.USA, 113, 2016
5HV2
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BU of 5hv2 by Molmil
Rifampin phosphotransferase G527Y mutant from Listeria monocytogenes
Descriptor: Phosphoenolpyruvate synthase
Authors:Zhang, P, Qi, X.
Deposit date:2016-01-28
Release date:2016-03-30
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.912 Å)
Cite:Structural basis of rifampin inactivation by rifampin phosphotransferase
Proc.Natl.Acad.Sci.USA, 113, 2016
6LIT
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BU of 6lit by Molmil
Estrogen-related receptor beta(ERR2) in complex with BPA
Descriptor: 10-mer from Nuclear receptor coactivator 2, 4,4'-PROPANE-2,2-DIYLDIPHENOL, Steroid hormone receptor ERR2
Authors:Yao, B.Q, Li, Y.
Deposit date:2019-12-13
Release date:2020-10-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Insights into the Specificity of Ligand Binding and Coactivator Assembly by Estrogen-Related Receptor beta.
J.Mol.Biol., 432, 2020
7ES4
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BU of 7es4 by Molmil
the crystral structure of DndH-C-domain
Descriptor: DNA phosphorothioation-dependent restriction protein DptH
Authors:Wu, D.
Deposit date:2021-05-08
Release date:2022-05-11
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The functional coupling between restriction and DNA phosphorothioate modification systems underlying the DndFGH restriction complex
Nat Catal, 2022
7EXX
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BU of 7exx by Molmil
The structure of DndG
Descriptor: DNA phosphorothioation-dependent restriction protein DptG, SODIUM ION
Authors:Wu, D, Wang, L.
Deposit date:2021-05-28
Release date:2022-06-01
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The functional coupling between restriction and DNA phosphorothioate modification systems underlying the DndFGH restriction complex
Nat Catal, 2022

238582

数据于2025-07-09公开中

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