1V8J
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1v8j by Molmil](/molmil-images/mine/1v8j) | The Crystal Structure of the Minimal Functional Domain of the Microtubule Destabilizer KIF2C Complexed with Mg-ADP | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, Kinesin-like protein KIF2C, MAGNESIUM ION | Authors: | Ogawa, T, Nitta, R, Okada, Y, Hirokawa, N. | Deposit date: | 2004-01-09 | Release date: | 2004-03-02 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (3.24 Å) | Cite: | A common mechanism for microtubule destabilizers-M type kinesins stabilize curling of the protofilament using the class-specific neck and loops. Cell(Cambridge,Mass.), 116, 2004
|
|
1V8K
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1v8k by Molmil](/molmil-images/mine/1v8k) | The Crystal Structure of the Minimal Functional Domain of the Microtubule Destabilizer KIF2C Complexed with Mg-AMPPNP | Descriptor: | Kinesin-like protein KIF2C, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | Authors: | Ogawa, T, Nitta, R, Okada, Y, Hirokawa, N. | Deposit date: | 2004-01-09 | Release date: | 2004-03-02 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.25 Å) | Cite: | A common mechanism for microtubule destabilizers-M type kinesins stabilize curling of the protofilament using the class-specific neck and loops. Cell(Cambridge,Mass.), 116, 2004
|
|
5XJB
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 5xjb by Molmil](/molmil-images/mine/5xjb) | The Crystal Structure of the Minimal Core Domain of the Microtubule Depolymerizer KIF2C Complexed with ADP-Mg-BeFx | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Kinesin-like protein KIF2C, ... | Authors: | Ogawa, T, Jiang, X, Hirokawa, N. | Deposit date: | 2017-04-30 | Release date: | 2017-09-13 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (3.1 Å) | Cite: | Mechanism of Catalytic Microtubule Depolymerization via KIF2-Tubulin Transitional Conformation Cell Rep, 20, 2017
|
|
5XJA
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 5xja by Molmil](/molmil-images/mine/5xja) | The Crystal Structure of the Minimal Core Domain of the Microtubule Depolymerizer KIF2C Complexed with ADP-Mg-AlFx | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, Kinesin-like protein KIF2C, ... | Authors: | Ogawa, T, Jiang, X, Hirokawa, N. | Deposit date: | 2017-04-30 | Release date: | 2017-09-13 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (3.43 Å) | Cite: | Mechanism of Catalytic Microtubule Depolymerization via KIF2-Tubulin Transitional Conformation Cell Rep, 20, 2017
|
|
3VQJ
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3vqj by Molmil](/molmil-images/mine/3vqj) | Crystal Structutre of Thiobacillus thioparus THI115 Carbonyl Sulfide Hydrolase | Descriptor: | Carbonyl sulfide hydrolase, SODIUM ION, ZINC ION | Authors: | Katayama, Y, Noguchi, K, Ogawa, T, Ohtaki, A, Odaka, M, Yohda, M. | Deposit date: | 2012-03-24 | Release date: | 2013-02-27 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.2 Å) | Cite: | Carbonyl Sulfide Hydrolase from Thiobacillus thioparus Strain THI115 Is One of the beta-Carbonic Anhydrase Family Enzymes J.Am.Chem.Soc., 135, 2013
|
|
3VRK
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3vrk by Molmil](/molmil-images/mine/3vrk) | Crystal Structutre of Thiobacillus thioparus THI115 Carbonyl Sulfide Hydrolase / Thiocyanate complex | Descriptor: | Carbonyl sulfide hydrolase, SODIUM ION, THIOCYANATE ION, ... | Authors: | Katayama, Y, Noguchi, K, Ogawa, T, Ohtaki, A, Odaka, M, Yohda, M. | Deposit date: | 2012-04-11 | Release date: | 2013-02-27 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.33 Å) | Cite: | Carbonyl Sulfide Hydrolase from Thiobacillus thioparus Strain THI115 Is One of the beta-Carbonic Anhydrase Family Enzymes J.Am.Chem.Soc., 135, 2013
|
|
7EOB
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 7eob by Molmil](/molmil-images/mine/7eob) | Crystal structure of KIF1A Motor-Neck domain E239K mutant with ADP-Mg-AlFx | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, Kinesin-like protein KIF1A, ... | Authors: | Ogawa, T, Jiang, X, Hirokawa, N. | Deposit date: | 2021-04-21 | Release date: | 2021-12-29 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.76 Å) | Cite: | A neuropathy-associated kinesin KIF1A mutation hyper-stabilizes the motor-neck interaction during the ATPase cycle. Embo J., 41, 2022
|
|
7EO9
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 7eo9 by Molmil](/molmil-images/mine/7eo9) | Crystal structure of KIF1A Motor-Neck domain with ADP-Mg-AlFx | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, Kinesin-like protein KIF1A, ... | Authors: | Ogawa, T, Jiang, X, Hirokawa, N. | Deposit date: | 2021-04-21 | Release date: | 2021-12-29 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.57 Å) | Cite: | A neuropathy-associated kinesin KIF1A mutation hyper-stabilizes the motor-neck interaction during the ATPase cycle. Embo J., 41, 2022
|
|
8W7P
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 8w7p by Molmil](/molmil-images/mine/8w7p) | Extracellular domain of a sensor histidine kinase | Descriptor: | Extracellular domain of a sensor histidine kinase NagS, GLYCEROL | Authors: | Itoh, T, Ogawa, T, Hibi, T, Kimoto, H. | Deposit date: | 2023-08-31 | Release date: | 2024-01-10 | Last modified: | 2024-03-06 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Characterization of the extracellular domain of sensor histidine kinase NagS from Paenibacillus sp. str. FPU-7: nagS interacts with oligosaccharide binding protein NagB1 in complexes with N, N'-diacetylchitobiose. Biosci.Biotechnol.Biochem., 88, 2024
|
|
6AL3
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 6al3 by Molmil](/molmil-images/mine/6al3) | Lys49 PLA2 BPII derived from the venom of Protobothrops flavoviridis. | Descriptor: | Basic phospholipase A2 BP-II, SULFATE ION | Authors: | Matsui, T, Kamata, S, Suzuki, A, Oda-Ueda, N, Ogawa, T, Tanaka, Y. | Deposit date: | 2018-09-05 | Release date: | 2019-01-16 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.57 Å) | Cite: | SDS-induced oligomerization of Lys49-phospholipase A2from snake venom. Sci Rep, 9, 2019
|
|
3VJ7
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3vj7 by Molmil](/molmil-images/mine/3vj7) | Crystal structure of the carboxy-terminal ribonuclease domain of Colicin E5 R33Q mutant | Descriptor: | 2'-DEOXYURIDINE 3'-MONOPHOSPHATE, 2-AMINO-9-(2-DEOXY-3-O-PHOSPHONOPENTOFURANOSYL)-1,9-DIHYDRO-6H-PURIN-6-ONE, Colicin-E5 | Authors: | Yajima, S, Inoue, S, Fushinobu, S, Ogawa, T, Hidaka, M, Masaki, H. | Deposit date: | 2011-10-13 | Release date: | 2011-11-02 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Identification of the catalytic residues of sequence-specific and histidine-free ribonuclease colicin E5 J.Biochem., 152, 2012
|
|
1C1F
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1c1f by Molmil](/molmil-images/mine/1c1f) | LIGAND-FREE CONGERIN I | Descriptor: | PROTEIN (CONGERIN I) | Authors: | Shirai, T, Mitsuyama, C, Niwa, Y, Matsui, Y, Hotta, H, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K. | Deposit date: | 1999-03-03 | Release date: | 1999-10-08 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | High-resolution structure of the conger eel galectin, congerin I, in lactose-liganded and ligand-free forms: emergence of a new structure class by accelerated evolution. Structure Fold.Des., 7, 1999
|
|
1C1L
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1c1l by Molmil](/molmil-images/mine/1c1l) | LACTOSE-LIGANDED CONGERIN I | Descriptor: | PROTEIN (CONGERIN I), beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | Authors: | Shirai, T, Mitsuyama, C, Niwa, Y, Matsui, Y, Hotta, H, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K. | Deposit date: | 1999-03-03 | Release date: | 1999-10-08 | Last modified: | 2023-08-09 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | High-resolution structure of the conger eel galectin, congerin I, in lactose-liganded and ligand-free forms: emergence of a new structure class by accelerated evolution. Structure Fold.Des., 7, 1999
|
|
1TFO
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1tfo by Molmil](/molmil-images/mine/1tfo) | Ribonuclease from Escherichia coli complexed with its inhibitor protein | Descriptor: | Colicin D, Colicin D immunity protein | Authors: | Yajima, S, Nakanishi, K, Takahashi, K, Ogawa, T, Kezuka, Y, Hidaka, M, Nonaka, T, Ohsawa, K, Masaki, H. | Deposit date: | 2004-05-27 | Release date: | 2005-03-01 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Relation between tRNase activity and the structure of colicin D according to X-ray crystallography Biochem.Biophys.Res.Commun., 322, 2004
|
|
1TFK
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1tfk by Molmil](/molmil-images/mine/1tfk) | Ribonuclease from Escherichia coli complexed with its inhibtor protein | Descriptor: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Colicin D, Colicin D immunity protein | Authors: | Yajima, S, Nakanishi, K, Takahashi, K, Ogawa, T, Kezuka, Y, Hidaka, M, Nonaka, T, Ohsawa, K, Masaki, H. | Deposit date: | 2004-05-27 | Release date: | 2005-03-01 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Relation between tRNase activity and the structure of colicin D according to X-ray crystallography Biochem.Biophys.Res.Commun., 322, 2004
|
|
1IS3
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1is3 by Molmil](/molmil-images/mine/1is3) | LACTOSE AND MES-LIGANDED CONGERIN II | Descriptor: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CONGERIN II, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | Authors: | Shirai, T, Matsui, Y, Shionyu-Mitsuyama, C, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K. | Deposit date: | 2001-11-12 | Release date: | 2002-09-18 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.45 Å) | Cite: | Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication J.MOL.BIOL., 321, 2002
|
|
1IS5
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1is5 by Molmil](/molmil-images/mine/1is5) | Ligand free Congerin II | Descriptor: | Congerin II | Authors: | Shirai, T, Matsui, Y, Shionyu-Mitsuyama, C, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K. | Deposit date: | 2001-11-12 | Release date: | 2002-09-18 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication J.MOL.BIOL., 321, 2002
|
|
1IS4
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1is4 by Molmil](/molmil-images/mine/1is4) | LACTOSE-LIGANDED CONGERIN II | Descriptor: | CONGERIN II, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | Authors: | Shirai, T, Matsui, Y, Shionyu-Mitsuyama, C, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K. | Deposit date: | 2001-11-12 | Release date: | 2002-09-18 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal Structure of a Conger Eel Galectin (Congerin II) at 1.45 A Resolution: Implication for the Accelerated Evolution of a New Ligand-Binding Site Following Gene Duplication J.Mol.Biol., 321, 2002
|
|
1IS6
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1is6 by Molmil](/molmil-images/mine/1is6) | MES-Liganded Congerin II | Descriptor: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Congerin II | Authors: | Shirai, T, Matsui, Y, Shionyu-Mitsuyama, C, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K. | Deposit date: | 2001-11-12 | Release date: | 2002-09-18 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication J.MOL.BIOL., 321, 2002
|
|
1WLC
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1wlc by Molmil](/molmil-images/mine/1wlc) | Congerin II Y16S/T88I double mutant | Descriptor: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Congerin II | Authors: | Shionyu-Mitsuyama, C, Ito, Y, Konno, A, Miwa, Y, Ogawa, T, Muramoto, K, Shirai, T. | Deposit date: | 2004-06-22 | Release date: | 2005-06-07 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | In vitro evolutionary thermostabilization of congerin II: a limited reproduction of natural protein evolution by artificial selection pressure J.Mol.Biol., 347, 2005
|
|
2DFX
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2dfx by Molmil](/molmil-images/mine/2dfx) | Crystal structure of the carboxy terminal domain of colicin E5 complexed with its inhibitor | Descriptor: | Colicin-E5, Colicin-E5 immunity protein | Authors: | Yajima, S, Inoue, S, Ogawa, T, Nonaka, T, Ohsawa, K, Masaki, H. | Deposit date: | 2006-03-06 | Release date: | 2007-01-23 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA-tRNA interaction Nucleic Acids Res., 34, 2006
|
|
2DJH
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2djh by Molmil](/molmil-images/mine/2djh) | Crystal structure of the carboxy-terminal ribonuclease domain of Colicin E5 | Descriptor: | 2'-DEOXYURIDINE 3'-MONOPHOSPHATE, 2-AMINO-9-(2-DEOXY-3-O-PHOSPHONOPENTOFURANOSYL)-1,9-DIHYDRO-6H-PURIN-6-ONE, Colicin-E5 | Authors: | Yajima, S, Inoue, S, Ogawa, T, Nonaka, T, Ohsawa, K, Masaki, H. | Deposit date: | 2006-04-03 | Release date: | 2007-01-23 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA-tRNA interaction Nucleic Acids Res., 34, 2006
|
|
1WLD
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1wld by Molmil](/molmil-images/mine/1wld) | Congerin II T88I single mutant | Descriptor: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CONGERIN II, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | Authors: | Shionyu-Mitsuyama, C, Ito, Y, Konno, A, Miwa, Y, Ogawa, T, Muramoto, K, Shirai, T. | Deposit date: | 2004-06-22 | Release date: | 2005-06-07 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | In vitro evolutionary thermostabilization of congerin II: a limited reproduction of natural protein evolution by artificial selection pressure J.Mol.Biol., 347, 2005
|
|
1WLW
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1wlw by Molmil](/molmil-images/mine/1wlw) | Congerin II Y16S single mutant | Descriptor: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Congerin II, beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose | Authors: | Shionyu-Mitsuyama, C, Ito, Y, Konno, A, Miwa, Y, Ogawa, T, Muramoto, K, Shirai, T. | Deposit date: | 2004-06-30 | Release date: | 2005-06-07 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | In vitro evolutionary thermostabilization of congerin II: a limited reproduction of natural protein evolution by artificial selection pressure J.Mol.Biol., 347, 2005
|
|
6JVB
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 6jvb by Molmil](/molmil-images/mine/6jvb) | |