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8FD0
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BU of 8fd0 by Molmil
Crystal structure of bovine rod opsin in complex with a nanobody
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Nanobody Nb2, ...
Authors:Salom, D, Palczewski, K, Kiser, P.D.
Deposit date:2022-12-01
Release date:2023-08-30
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.71 Å)
Cite:Structural basis for the allosteric modulation of rhodopsin by nanobody binding to its extracellular domain.
Nat Commun, 14, 2023
8FCZ
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BU of 8fcz by Molmil
Crystal structure of ground-state rhodopsin in complex with a nanobody
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Nanobody Nb2, ...
Authors:Salom, D, Palczewski, K, Kiser, P.D.
Deposit date:2022-12-01
Release date:2023-08-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Structural basis for the allosteric modulation of rhodopsin by nanobody binding to its extracellular domain.
Nat Commun, 14, 2023
8FQ7
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BU of 8fq7 by Molmil
Nanobody with WIW inserted in CDR3 loop to Inhibit Growth of Alzheimer's Tau fibrils
Descriptor: GLYCEROL, Nanobody with WIW insert in CDR3 loop to target tau fibrils
Authors:Abskharon, R, Sawaya, M.R, Cascio, D.C, Eisenberg, D.S.
Deposit date:2023-01-05
Release date:2023-10-04
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure-based design of nanobodies that inhibit seeding of Alzheimer's patient-extracted tau fibrils.
Proc.Natl.Acad.Sci.USA, 120, 2023
5VAK
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BU of 5vak by Molmil
Crystal Structure of Beta-Klotho, Domain 1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-klotho, ...
Authors:Lee, S, Schlessinger, J.
Deposit date:2017-03-27
Release date:2018-01-31
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures of beta-klotho reveal a 'zip code'-like mechanism for endocrine FGF signalling.
Nature, 553, 2018
5VAN
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BU of 5van by Molmil
Crystal Structure of Beta-Klotho
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Lee, S, Schlessinger, J.
Deposit date:2017-03-27
Release date:2018-01-31
Last modified:2021-03-24
Method:X-RAY DIFFRACTION (2.202 Å)
Cite:Structures of beta-klotho reveal a 'zip code'-like mechanism for endocrine FGF signalling.
Nature, 553, 2018
3K80
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BU of 3k80 by Molmil
Structure of essential protein from Trypanosoma brucei
Descriptor: Antibody, MP18 RNA editing complex protein
Authors:Wu, M.
Deposit date:2009-10-13
Release date:2010-11-17
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of a key interaction protein from the Trypanosoma brucei editosome in complex with single domain antibodies.
J.Struct.Biol., 174, 2011
5VAQ
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BU of 5vaq by Molmil
Crystal Structure of Beta-Klotho in Complex with FGF21CT
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-klotho, Fibroblast growth factor 21, ...
Authors:Lee, S, Schlessinger, J.
Deposit date:2017-03-27
Release date:2018-01-31
Last modified:2021-03-24
Method:X-RAY DIFFRACTION (2.606 Å)
Cite:Structures of beta-klotho reveal a 'zip code'-like mechanism for endocrine FGF signalling.
Nature, 553, 2018
3K81
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BU of 3k81 by Molmil
Structure of the central interaction protein from the Trypanosoma brucei editosome in complex with single domain antibodies
Descriptor: MP18 RNA editing complex protein, Single strand antibody VHH domain
Authors:Park, Y.-J, Hol, W.
Deposit date:2009-10-13
Release date:2010-11-17
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structures of a key interaction protein from the Trypanosoma brucei editosome in complex with single domain antibodies.
J.Struct.Biol., 174, 2011
3K7U
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BU of 3k7u by Molmil
Structure of essential protein from Trypanosoma brucei
Descriptor: Antibody, MP18 RNA editing complex protein
Authors:Wu, M.
Deposit date:2009-10-13
Release date:2010-11-17
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of a key interaction protein from the Trypanosoma brucei editosome in complex with single domain antibodies.
J.Struct.Biol., 174, 2011
5GXB
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BU of 5gxb by Molmil
crystal structure of a LacY/Nanobody complex
Descriptor: Lactose permease, nanobody
Authors:Jiang, X, Wu, J.P, Yan, N, Kaback, H.R.
Deposit date:2016-09-16
Release date:2016-10-26
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal structure of a LacY-nanobody complex in a periplasmic-open conformation.
Proc.Natl.Acad.Sci.USA, 113, 2016
3STB
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BU of 3stb by Molmil
A complex of two editosome proteins and two nanobodies
Descriptor: MP18 RNA editing complex protein, RNA-editing complex protein MP42, single domain antibody VHH
Authors:Park, Y.-J, Hol, W.
Deposit date:2011-07-09
Release date:2011-11-02
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of a heterodimer of editosome interaction proteins in complex with two copies of a cross-reacting nanobody.
Nucleic Acids Res., 40, 2012
7APJ
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BU of 7apj by Molmil
Structure of autoinhibited Akt1 reveals mechanism of PIP3-mediated activation
Descriptor: NB41, RAC-alpha serine/threonine-protein kinase,Non-specific serine/threonine protein kinase,RAC-alpha serine/threonine-protein kinase
Authors:Truebestein, L, Hornegger, H, Leonard, T.A.
Deposit date:2020-10-16
Release date:2021-08-25
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure of autoinhibited Akt1 reveals mechanism of PIP 3 -mediated activation.
Proc.Natl.Acad.Sci.USA, 118, 2021
5IOF
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BU of 5iof by Molmil
Structure of the transmembrane domain of the transporter SLC26Dg
Descriptor: Sulphate transporter
Authors:Dutzler, R, Geertsma, E.R.G, Shaik, F.R.
Deposit date:2016-03-08
Release date:2016-03-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:Structure of a prokaryotic fumarate transporter reveals the architecture of the SLC26 family.
Nat. Struct. Mol. Biol., 22, 2015
5G5R
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BU of 5g5r by Molmil
CBS domain tandem of site-2 protease from Archaeoglobus fulgidus in complex with llama Nanobody - apo form
Descriptor: NANOBODY, SITE-2 PROTEASE, SULFATE ION
Authors:Schacherl, M, Baumann, U.
Deposit date:2016-06-02
Release date:2017-05-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystallographic and biochemical characterization of the dimeric architecture of site-2 protease.
Biochim. Biophys. Acta, 1859, 2017
5G5X
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BU of 5g5x by Molmil
CBS domain tandem of site-2 protease from Archaeoglobus fulgidus in complex with llama Nanobody - nucleotide-bound form
Descriptor: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, NANOBODY, ...
Authors:Schacherl, M, Baumann, U.
Deposit date:2016-06-09
Release date:2017-05-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystallographic and biochemical characterization of the dimeric architecture of site-2 protease.
Biochim. Biophys. Acta, 1859, 2017
4OCN
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BU of 4ocn by Molmil
Crystal Structure of the Rpn8-Rpn11 MPN domain heterodimer, crystal form II
Descriptor: 26S proteasome regulatory subunit RPN11, 26S proteasome regulatory subunit RPN8, Nb1
Authors:Pathare, G.R, Bracher, A.
Deposit date:2014-01-09
Release date:2014-01-29
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of the proteasomal deubiquitylation module Rpn8-Rpn11.
Proc.Natl.Acad.Sci.USA, 111, 2014
4OCL
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BU of 4ocl by Molmil
Crystal Structure of the Rpn8-Rpn11 MPN domain heterodimer, crystal form Ia
Descriptor: 26S proteasome regulatory subunit RPN11, 26S proteasome regulatory subunit RPN8, Nb1, ...
Authors:Pathare, G.R, Bracher, A.
Deposit date:2014-01-09
Release date:2014-01-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the proteasomal deubiquitylation module Rpn8-Rpn11.
Proc.Natl.Acad.Sci.USA, 111, 2014
4OCM
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BU of 4ocm by Molmil
Crystal Structure of the Rpn8-Rpn11 MPN domain heterodimer, crystal form Ib
Descriptor: 26S proteasome regulatory subunit RPN11, 26S proteasome regulatory subunit RPN8, Nb1, ...
Authors:Pathare, G.R, Bracher, A.
Deposit date:2014-01-09
Release date:2014-01-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Crystal structure of the proteasomal deubiquitylation module Rpn8-Rpn11.
Proc.Natl.Acad.Sci.USA, 111, 2014
6QX3
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BU of 6qx3 by Molmil
Influenza A virus (A/NT/60/1968) polymerase Hetermotrimer in complex with 3'5' cRNA promoter and Nb8205
Descriptor: Nb8205, Polymerase acidic protein, Polymerase basic protein 2, ...
Authors:Carrique, L, Keown, J.R, Fan, H, Fodor, E, Grimes, J.M.
Deposit date:2019-03-07
Release date:2019-09-04
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.79 Å)
Cite:Structures of influenza A virus RNA polymerase offer insight into viral genome replication.
Nature, 573, 2019
6RR7
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BU of 6rr7 by Molmil
Influenza A virus (A/NT/60/1968) polymerase Heterotrimer bound to 3'5' vRNA promoter and capped RNA primer
Descriptor: Polymerase acidic protein, Polymerase basic protein 2, RNA (5'-D(*(M7G))-R(P*AP*AP*UP*CP*U)-3'), ...
Authors:Carrique, L, Keown, J.R, Fan, H, Fodor, E, Grimes, J.M.
Deposit date:2019-05-17
Release date:2019-09-04
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.01 Å)
Cite:Structures of influenza A virus RNA polymerase offer insight into viral genome replication.
Nature, 573, 2019
7RTH
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BU of 7rth by Molmil
Crystal structure of an anti-lysozyme nanobody in complex with an anti-nanobody Fab "NabFab"
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, Fragment Antigen-Binding Heavy Chain, ...
Authors:Filippova, E.V, Mukherjee, S, Bloch, J.S, Locher, K.P, Kossiakoff, A.A.
Deposit date:2021-08-13
Release date:2021-09-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.19 Å)
Cite:Development of a universal nanobody-binding Fab module for fiducial-assisted cryo-EM studies of membrane proteins.
Proc.Natl.Acad.Sci.USA, 118, 2021
7SPA
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BU of 7spa by Molmil
Chlorella virus Hyaluronan Synthase in the GlcNAc-primed, channel-open state
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL HEMISUCCINATE, ...
Authors:Maloney, F.P, Kuklewicz, J, Zimmer, J.
Deposit date:2021-11-02
Release date:2022-04-06
Last modified:2022-04-20
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structure, substrate recognition and initiation of hyaluronan synthase.
Nature, 604, 2022
7SP8
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BU of 7sp8 by Molmil
Chlorella virus Hyaluronan Synthase bound to UDP-GlcNAc
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, CHOLESTEROL HEMISUCCINATE, Hyaluronan synthase, ...
Authors:Maloney, F.P, Kuklewicz, J, Zimmer, J.
Deposit date:2021-11-02
Release date:2022-04-06
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structure, substrate recognition and initiation of hyaluronan synthase.
Nature, 604, 2022
7SP7
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BU of 7sp7 by Molmil
Chlorella virus hyaluronan synthase inhibited by UDP
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, CHOLESTEROL HEMISUCCINATE, Hyaluronan synthase, ...
Authors:Maloney, F.P, Kuklewicz, J, Zimmer, J.
Deposit date:2021-11-02
Release date:2022-04-06
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structure, substrate recognition and initiation of hyaluronan synthase.
Nature, 604, 2022
7SP9
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BU of 7sp9 by Molmil
Chlorella virus Hyaluronan Synthase in the GlcNAc-primed channel-closed state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL HEMISUCCINATE, Hyaluronan synthase, ...
Authors:Maloney, F.P, Kuklewicz, J, Zimmer, J.
Deposit date:2021-11-02
Release date:2022-04-06
Last modified:2022-04-20
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structure, substrate recognition and initiation of hyaluronan synthase.
Nature, 604, 2022

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