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Serial femtosecond crystallography structure of photo dissociated CO from ba3- type cytochrome c oxidase determined by extrapolation method
Descriptor:	(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CARBON MONOXIDE, COPPER (II) ION, ...
Authors:	Safari, C, Ghosh, S, Andersson, R, Johannesson, J, Donoso, A.V, Zoric, D, Sandelin, E, Iwata, S, Neutze, R, Branden, G.
Deposit date:	2023-07-25
Release date:	2023-11-15
Last modified:	2024-03-20
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Time-resolved serial crystallography to track the dynamics of carbon monoxide in the active site of cytochrome c oxidase. Sci Adv, 9, 2023

8K65

Serial femtosecond crystallography structure of CO bound ba3- type cytochrome c oxidase without pump laser irradiation
Descriptor:	(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CARBON MONOXIDE, COPPER (II) ION, ...
Authors:	Safari, C, Ghosh, S, Andersson, R, Johannesson, J, Donoso, A.V, Bath, P, Zoric, D, Sandelin, E, Nango, E, Tanaka, R, Iwata, S, Neutze, R, Branden, G.
Deposit date:	2023-07-25
Release date:	2023-11-15
Last modified:	2024-03-20
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Time-resolved serial crystallography to track the dynamics of carbon monoxide in the active site of cytochrome c oxidase. Sci Adv, 9, 2023

5H2M

A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 13.8 us after photoexcitation
Descriptor:	2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, DECANE, ...
Authors:	Royant, A, Nango, E, Nakane, T, Tanaka, T, Arima, T, Neutze, R, Iwata, S.
Deposit date:	2016-10-15
Release date:	2016-12-21
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	A three-dimensional movie of structural changes in bacteriorhodopsin Science, 354, 2016

5H2J

A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 290 ns after photoexcitation
Descriptor:	2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, DECANE, ...
Authors:	Royant, A, Nango, E, Nakane, T, Tanaka, T, Arima, T, Neutze, R, Iwata, S.
Deposit date:	2016-10-15
Release date:	2016-12-21
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	A three-dimensional movie of structural changes in bacteriorhodopsin Science, 354, 2016

5H2P

A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 657 us after photoexcitation
Descriptor:	2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, DECANE, ...
Authors:	Royant, A, Nango, E, Nakane, T, Tanaka, T, Arima, T, Neutze, R, Iwata, S.
Deposit date:	2016-10-15
Release date:	2016-12-21
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	A three-dimensional movie of structural changes in bacteriorhodopsin Science, 354, 2016

5H2H

A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 40 ns after photoexcitation
Descriptor:	2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, DECANE, ...
Authors:	Royant, A, Nango, E, Nakane, T, Tanaka, T, Arima, T, Neutze, R, Iwata, S.
Deposit date:	2016-10-15
Release date:	2016-12-21
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	A three-dimensional movie of structural changes in bacteriorhodopsin Science, 354, 2016

5H2K

A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 2 us after photoexcitation
Descriptor:	2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, DECANE, ...
Authors:	Royant, A, Nango, E, Nakane, T, Tanaka, T, Arima, T, Neutze, R, Iwata, S.
Deposit date:	2016-10-15
Release date:	2016-12-21
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	A three-dimensional movie of structural changes in bacteriorhodopsin Science, 354, 2016

5H2I

A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 110 ns after photoexcitation
Descriptor:	2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, DECANE, ...
Authors:	Royant, A, Nango, E, Nakane, T, Tanaka, T, Arima, T, Neutze, R, Iwata, S.
Deposit date:	2016-10-15
Release date:	2016-12-21
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	A three-dimensional movie of structural changes in bacteriorhodopsin Science, 354, 2016

3WSW

Crystal structure of minor L-lactate dehydrogenase from Enterococcus mundtii in the ligands-bound form
Descriptor:	1,6-di-O-phosphono-beta-D-fructofuranose, GLYCEROL, L-lactate dehydrogenase, ...
Authors:	Matoba, Y, Sugiyama, M.
Deposit date:	2014-03-27
Release date:	2014-09-10
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	An alternative allosteric regulation mechanism of an acidophilic l-lactate dehydrogenase from Enterococcus mundtii 15-1A. Febs Open Bio, 4, 2014

3WSV

Crystal structure of minor L-lactate dehydrogenase from Enterococcus mundtii in the ligands-unbound form
Descriptor:	GLYCEROL, L-lactate dehydrogenase
Authors:	Matoba, Y, Sugiyama, M.
Deposit date:	2014-03-27
Release date:	2014-09-10
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.38 Å)
Cite:	An alternative allosteric regulation mechanism of an acidophilic l-lactate dehydrogenase from Enterococcus mundtii 15-1A. Febs Open Bio, 4, 2014

5H2L

A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 5.25 us after photoexcitation
Descriptor:	2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, DECANE, ...
Authors:	Royant, A, Nango, E, Nakane, T, Tanaka, T, Arima, T, Neutze, R, Iwata, S.
Deposit date:	2016-10-15
Release date:	2016-12-21
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	A three-dimensional movie of structural changes in bacteriorhodopsin Science, 354, 2016

5H2N

A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 95.2 us after photoexcitation
Descriptor:	2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, DECANE, ...
Authors:	Royant, A, Nango, E, Nakane, T, Tanaka, T, Arima, T, Neutze, R, Iwata, S.
Deposit date:	2016-10-15
Release date:	2016-12-21
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	A three-dimensional movie of structural changes in bacteriorhodopsin Science, 354, 2016

5H2O

A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 250 us after photoexcitation
Descriptor:	2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, DECANE, ...
Authors:	Royant, A, Nango, E, Nakane, T, Tanaka, T, Arima, T, Neutze, R, Iwata, S.
Deposit date:	2016-10-15
Release date:	2016-12-21
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	A three-dimensional movie of structural changes in bacteriorhodopsin Science, 354, 2016

2ZMY

Crystal structure of the met2-form of the copper-bound tyrosinase in complex with a caddie protein from Streptomyces castaneoglobisporus obtained by soaking in cupric sulfate solution for 80 hours
Descriptor:	CADDIE, COPPER (II) ION, NITRATE ION, ...
Authors:	Matoba, Y, Sugiyama, M.
Deposit date:	2008-04-21
Release date:	2009-05-05
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (1.45 Å)
Cite:	X-Ray Snapshots of a Hydroxylation Mechanism of Tyrosinase To be Published

2ZWG

Crystal structure of the copper-bound tyrosinase in complex with a caddie protein from streptomyces castaneoglobisporus obtained by soaking the deoxy-form crystal in dioxygen-saturated solution for 12 hours
Descriptor:	COPPER (II) ION, MelC, NITRATE ION, ...
Authors:	Matoba, Y, Sugiyama, M.
Deposit date:	2008-12-03
Release date:	2009-12-15
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (1.32 Å)
Cite:	Crystallographic evidence of drastic movement of a copper ion toward the substrate tyrosine for starting hydroxylation reaction of tyrosinase To be Published

3AZQ

Crystal structure of puromycin hydrolase S511A mutant complexed with PGG
Descriptor:	Aminopeptidase, SULFATE ION, tripeptide PGG
Authors:	Matoba, Y, Sugiyama, M.
Deposit date:	2011-05-27
Release date:	2011-07-27
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (2.7 Å)
Cite:	Structural evidence that puromycin hydrolase is a new type of aminopeptidase with a prolyl oligopeptidase family fold Proteins, 79, 2011

2ZWF

Crystal structure of the copper-bound tyrosinase in complex with a caddie protein from streptomyces castaneoglobisporus obtained by soaking the deoxy-form crystal in dioxygen-saturated solution for 80 minutes
Descriptor:	COPPER (II) ION, MelC, NITRATE ION, ...
Authors:	Matoba, Y, Sugiyama, M.
Deposit date:	2008-12-03
Release date:	2009-12-15
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (1.4 Å)
Cite:	Crystallographic evidence of drastic movement of a copper ion toward the substrate tyrosine for starting hydroxylation reaction of tyrosinase To be Published

2ZWE

Crystal structure of the copper-bound tyrosinase in complex with a caddie protein from streptomyces castaneoglobisporus obtained by soaking the deoxy-form crystal in dioxygen-saturated solution for 40 minutes
Descriptor:	COPPER (II) ION, MelC, NITRATE ION, ...
Authors:	Matoba, Y, Sugiyama, M.
Deposit date:	2008-12-03
Release date:	2009-12-15
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (1.32 Å)
Cite:	Crystallographic evidence of drastic movement of a copper ion toward the substrate tyrosine for starting hydroxylation reaction of tyrosinase To be Published

2ZMZ

The 1.37-A crystal structure of the hydroxylamine-induced deoxy-form of the copper-bound tyrosinase in complex with a caddie protein from Streptomyces castaneoglobisporus
Descriptor:	CADDIE, COPPER (I) ION, NITRATE ION, ...
Authors:	Matoba, Y, Sugiyama, M.
Deposit date:	2008-04-21
Release date:	2009-05-05
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (1.37 Å)
Cite:	X-Ray Snapshots of a Hydroxylation Mechanism of Tyrosinase To be Published

2ZWD

Crystal structure of the copper-bound tyrosinase in complex with a caddie protein from streptomyces castaneoglobisporus obtained by soaking the deoxy-form crystal in dioxygen-saturated solution for 5 minutes
Descriptor:	COPPER (I) ION, MelC, NITRATE ION, ...
Authors:	Matoba, Y, Sugiyama, M.
Deposit date:	2008-12-03
Release date:	2009-12-15
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (1.35 Å)
Cite:	Crystallographic evidence of drastic movement of a copper ion toward the substrate tyrosine for starting hydroxylation reaction of tyrosinase To be Published

3AWT

Crystal structure of Streptomyces tyrosinase in a complex with caddie soaked in a Cu(II)-containing solution for 20 hr: occupancy of Cu(II) is high
Descriptor:	COPPER (II) ION, MelC, NITRATE ION, ...
Authors:	Matoba, Y, Sugiyama, M.
Deposit date:	2011-03-26
Release date:	2011-06-29
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (1.35 Å)
Cite:	A molecular mechanism for copper transportation to tyrosinase that is assisted by a metallochaperone, caddie protein J.Biol.Chem., 286, 2011

3AWY

Crystal structure of Streptomyces tyrosinase in a complex with caddie M84L mutant soaked in a Cu(II)-containing solution for 80 hr
Descriptor:	COPPER (II) ION, MelC, NITRATE ION, ...
Authors:	Matoba, Y, Sugiyama, M.
Deposit date:	2011-03-26
Release date:	2011-06-29
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (1.58 Å)
Cite:	A molecular mechanism for copper transportation to tyrosinase that is assisted by a metallochaperone, caddie protein J.Biol.Chem., 286, 2011

3AWW

Crystal structure of Streptomyces tyrosinase in a complex with caddie soaked in a Cu(II)-containing solution for 80 hr: occupancy of CuA is high
Descriptor:	COPPER (II) ION, MelC, NITRATE ION, ...
Authors:	Matoba, Y, Sugiyama, M.
Deposit date:	2011-03-26
Release date:	2011-06-29
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (1.35 Å)
Cite:	A molecular mechanism for copper transportation to tyrosinase that is assisted by a metallochaperone, caddie protein J.Biol.Chem., 286, 2011

3AWV

Crystal structure of Streptomyces tyrosinase in a complex with caddie soaked in a Cu(II)-containing solution for 80 hr: occupancy of CuA is low
Descriptor:	COPPER (II) ION, MelC, NITRATE ION, ...
Authors:	Matoba, Y, Sugiyama, M.
Deposit date:	2011-03-26
Release date:	2011-06-29
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (1.4 Å)
Cite:	A molecular mechanism for copper transportation to tyrosinase that is assisted by a metallochaperone, caddie protein J.Biol.Chem., 286, 2011

3AWS

Crystal structure of Streptomyces tyrosinase in a complex with caddie soaked in a Cu(II)-containing solution for 20 hr: occupancy of Cu(II) is low
Descriptor:	COPPER (II) ION, MelC, NITRATE ION, ...
Authors:	Matoba, Y, Sugiyama, M.
Deposit date:	2011-03-26
Release date:	2011-06-29
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (1.24 Å)
Cite:	A molecular mechanism for copper transportation to tyrosinase that is assisted by a metallochaperone, caddie protein J.Biol.Chem., 286, 2011

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