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7KZU
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BU of 7kzu by Molmil
Quasi-intermediate state (Q) of a truncated Hsp70 DnaK fused with a substrate peptide
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperone protein DnaK fused with substrate peptide,Chaperone protein DnaK fused with substrate peptide, GLYCEROL, ...
Authors:Wang, W, Hendrickson, W.A.
Deposit date:2020-12-10
Release date:2021-05-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Intermediates in allosteric equilibria of DnaK-ATP interactions with substrate peptides
Acta Crystallogr.,Sect.D, 77, 2021
3PS5
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BU of 3ps5 by Molmil
Crystal structure of the full-length Human Protein Tyrosine Phosphatase SHP-1
Descriptor: SULFATE ION, Tyrosine-protein phosphatase non-receptor type 6
Authors:Wang, W, Liu, L, Song, X, Mo, Y, Komma, C, Bellamy, H.D, Zhao, Z.J, Zhou, G.W.
Deposit date:2010-11-30
Release date:2011-04-20
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structure of human protein tyrosine phosphatase SHP-1 in the open conformation.
J.Cell.Biochem., 112, 2011
3PX4
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BU of 3px4 by Molmil
Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to DNA and ddCTP-dA Mismatch (wobble) in Ajar Conformation
Descriptor: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*TP*AP*GP*GP*AP*GP*TP*CP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DOC))-3'), ...
Authors:Wang, W, Beese, L.S.
Deposit date:2010-12-09
Release date:2011-10-19
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.582 Å)
Cite:Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis.
Proc.Natl.Acad.Sci.USA, 108, 2011
3PX0
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BU of 3px0 by Molmil
Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to DNA and dCTP-dA Mismatch (tautomer) in Closed Conformation
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*C*AP*TP*AP*GP*GP*AP*GP*TP*CP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DOC))-3'), ...
Authors:Wang, W, Beese, L.S.
Deposit date:2010-12-09
Release date:2011-10-19
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis.
Proc.Natl.Acad.Sci.USA, 108, 2011
4LJR
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BU of 4ljr by Molmil
Structural insights into the unique single-stranded DNA binding mode of DNA processing protein A from Helicobacter pylori
Descriptor: DNA processing chain A, single-stranded DNA
Authors:Wang, W.
Deposit date:2013-07-05
Release date:2014-01-01
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insights into the unique single-stranded DNA-binding mode of Helicobacter pylori DprA.
Nucleic Acids Res., 42, 2014
4LJL
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BU of 4ljl by Molmil
Structural insights into the unique single-stranded DNA binding mode of DNA processing protein A from Helicobacter pylori
Descriptor: DNA processing chain A (DprA)
Authors:Wang, W.
Deposit date:2013-07-05
Release date:2014-01-01
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural insights into the unique single-stranded DNA-binding mode of Helicobacter pylori DprA.
Nucleic Acids Res., 42, 2014
4LJK
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BU of 4ljk by Molmil
Structural insights into the unique single-stranded DNA binding mode of DNA processing protein A from Helicobacter pylori
Descriptor: DNA processing chain A (DprA)
Authors:Wang, W.
Deposit date:2013-07-05
Release date:2014-01-01
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (2.354 Å)
Cite:Structural insights into the unique single-stranded DNA-binding mode of Helicobacter pylori DprA.
Nucleic Acids Res., 42, 2014
6CU1
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BU of 6cu1 by Molmil
X-ray structure of the S. typhimurium YrlA effector-binding module
Descriptor: MAGNESIUM ION, SULFATE ION, YrlA effector-binding module
Authors:Wang, W, Chen, X, Wolin, S.L, Xiong, Y.
Deposit date:2018-03-23
Release date:2018-10-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Basis for tRNA Mimicry by a Bacterial Y RNA.
Structure, 26, 2018
5XET
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BU of 5xet by Molmil
Crystal structure of Mycobacterium tuberculosis methionyl-tRNA synthetase bound by methionyl-adenylate (Met-AMP)
Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, Methionine--tRNA ligase, ...
Authors:Wang, W, Qin, B, Wojdyla, J.A, Wang, M, Gao, X, Cui, S.
Deposit date:2017-04-06
Release date:2018-07-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Structural characterization of free-state and product-stateMycobacterium tuberculosismethionyl-tRNA synthetase reveals an induced-fit ligand-recognition mechanism.
IUCrJ, 5, 2018
2MRM
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BU of 2mrm by Molmil
Solution structure of the rhodanese domain of YgaP from E. coli
Descriptor: Membrane protein
Authors:Wang, W, Zhou, P, Tian, C, Wu, F.
Deposit date:2014-07-12
Release date:2014-10-08
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Fast conformational exchange between the sulfur-free and persulfide-bound rhodanese domain of E. coli YgaP
Biochem.Biophys.Res.Commun., 452, 2014
8G7U
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BU of 8g7u by Molmil
Cryo-EM structure of Riplet:RIG-I:dsRNA complex (end-semi-closed end)
Descriptor: Antiviral innate immune response receptor RIG-I, E3 ubiquitin-protein ligase RNF135, ZINC ION, ...
Authors:Wang, W, Pyle, A.M.
Deposit date:2023-02-17
Release date:2023-11-15
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (4 Å)
Cite:The E3 ligase Riplet promotes RIG-I signaling independent of RIG-I oligomerization.
Nat Commun, 14, 2023
8G7T
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BU of 8g7t by Molmil
Cryo-EM structure of Riplet:RIG-I:dsRNA complex (end-end)
Descriptor: Antiviral innate immune response receptor RIG-I, E3 ubiquitin-protein ligase RNF135, ZINC ION, ...
Authors:Wang, W, Pyle, A.M.
Deposit date:2023-02-17
Release date:2023-11-15
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:The E3 ligase Riplet promotes RIG-I signaling independent of RIG-I oligomerization.
Nat Commun, 14, 2023
8G7V
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BU of 8g7v by Molmil
Cryo-EM structure of Riplet:RIG-I:dsRNA complex (end-inter)
Descriptor: Antiviral innate immune response receptor RIG-I, E3 ubiquitin-protein ligase RNF135, ZINC ION, ...
Authors:Wang, W, Pyle, A.M.
Deposit date:2023-02-17
Release date:2023-11-15
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:The E3 ligase Riplet promotes RIG-I signaling independent of RIG-I oligomerization.
Nat Commun, 14, 2023
5Z1Q
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BU of 5z1q by Molmil
Crystal structures of the trimeric N-terminal domain of Ciliate Euplotes octocarinatus Centrin
Descriptor: CALCIUM ION, CHLORIDE ION, Centrin protein
Authors:Wang, W, Zhao, Y, Yang, B, Wang, H.
Deposit date:2017-12-27
Release date:2018-04-25
Last modified:2018-06-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the trimeric N-terminal domain of ciliate Euplotes octocarinatus centrin binding with calcium ions
Protein Sci., 27, 2018
8K8T
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BU of 8k8t by Molmil
Structure of CUL3-RBX1-KLHL22 complex
Descriptor: Cullin-3, Kelch-like protein 22
Authors:Wang, W, Ling, L, Dai, Z, Zuo, P, Yin, Y.
Deposit date:2023-07-31
Release date:2024-05-22
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:A conserved N-terminal motif of CUL3 contributes to assembly and E3 ligase activity of CRL3 KLHL22.
Nat Commun, 15, 2024
8K9I
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BU of 8k9i by Molmil
Structure of CUL3-RBX1-KLHL22 complex without CUL3 NA motif
Descriptor: Cullin-3, E3 ubiquitin-protein ligase RBX1, N-terminally processed, ...
Authors:Wang, W, Ling, L, Dai, Z, Zuo, P, Yin, Y.
Deposit date:2023-08-01
Release date:2024-05-29
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:A conserved N-terminal motif of CUL3 contributes to assembly and E3 ligase activity of CRL3 KLHL22.
Nat Commun, 15, 2024
2I1L
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BU of 2i1l by Molmil
Crystal structure of the C2 form of FAD synthetase from Thermotoga maritima
Descriptor: Riboflavin kinase/FMN adenylyltransferase
Authors:Wang, W, Shin, D.H, Yokota, H, Kim, R, Kim, S.-H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2006-08-14
Release date:2006-11-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the C2 form of FAD synthetase from Thermotoga maritima
To be Published
5XGQ
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BU of 5xgq by Molmil
Crystal structure of apo form (free-state) Mycobacterium tuberculosis methionyl-tRNA synthetase
Descriptor: Methionine-tRNA ligase
Authors:Wang, W, Wang, M, Wojdyla, J.A, Cui, S.
Deposit date:2017-04-15
Release date:2018-07-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.899 Å)
Cite:Structural characterization of free-state and product-stateMycobacterium tuberculosismethionyl-tRNA synthetase reveals an induced-fit ligand-recognition mechanism
IUCrJ, 5, 2018
4L67
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BU of 4l67 by Molmil
Crystal Structure of Catalytic Domain of PAK4
Descriptor: Serine/threonine-protein kinase PAK 4
Authors:Wang, W, Song, J.
Deposit date:2013-06-12
Release date:2013-08-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:NMR binding and crystal structure reveal that intrinsically-unstructured regulatory domain auto-inhibits PAK4 by a mechanism different for that of PAK1
Biochem.Biophys.Res.Commun., 438, 2013
3SSP
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BU of 3ssp by Molmil
Engineered low-affinity halide-binding protein derived from YFP: halide-free
Descriptor: Green fluorescent protein
Authors:Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
Deposit date:2011-07-08
Release date:2012-07-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.628 Å)
Cite:Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition
To be Published
3SVC
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BU of 3svc by Molmil
Engineered medium-affinity halide-binding protein derived from YFP: chloride complex
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Green fluorescent protein
Authors:Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
Deposit date:2011-07-12
Release date:2012-07-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition
To be Published
3SSL
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BU of 3ssl by Molmil
Engineered high-affinity halide-binding protein derived from YFP: iodide complex
Descriptor: Green fluorescent protein, IODIDE ION
Authors:Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
Deposit date:2011-07-08
Release date:2012-07-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.449 Å)
Cite:Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition
To be published
3SSY
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BU of 3ssy by Molmil
Engineered low-affinity halide-binding protein derived from YFP: iodide complex
Descriptor: Green fluorescent protein, IODIDE ION
Authors:Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
Deposit date:2011-07-08
Release date:2012-07-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.769 Å)
Cite:Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition
To be Published
3TAR
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BU of 3tar by Molmil
Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to Duplex DNA with Cytosine-Adenine Mismatch at (n-6) Position
Descriptor: 5'-D(*GP*AP*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*CP*AP*CP*GP*TP*C)-3', DNA polymerase I, ...
Authors:Wang, W, Beese, L.S.
Deposit date:2011-08-04
Release date:2011-10-19
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis.
Proc.Natl.Acad.Sci.USA, 108, 2011
3SSV
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BU of 3ssv by Molmil
Engineered low-affinity halide-binding protein derived from YFP: fluoride complex
Descriptor: FLUORIDE ION, Green fluorescent protein
Authors:Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
Deposit date:2011-07-08
Release date:2012-07-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.861 Å)
Cite:Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition
To be Published

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