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7XSF
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BU of 7xsf by Molmil
Crystal structure of ClAgl29A
Descriptor: Alpha-L-fucosidase, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Shishiuchi, R, Kang, H, Tagami, T, Okuyama, M.
Deposit date:2022-05-14
Release date:2023-01-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.006 Å)
Cite:Discovery of alpha-l-Glucosidase Raises the Possibility of alpha-l-Glucosides in Nature.
Acs Omega, 7, 2022
7XSG
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BU of 7xsg by Molmil
Crystal structure of ClAgl29B
Descriptor: Alpha-L-fucosidase, CITRIC ACID, DI(HYDROXYETHYL)ETHER, ...
Authors:Shishiuchi, R, Kang, H, Tagami, T, Okuyama, M.
Deposit date:2022-05-14
Release date:2023-01-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.609 Å)
Cite:Discovery of alpha-l-Glucosidase Raises the Possibility of alpha-l-Glucosides in Nature.
Acs Omega, 7, 2022
7XSH
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BU of 7xsh by Molmil
Crystal structure of ClAgl29B bound with L-glucose
Descriptor: Alpha-L-fucosidase, CITRIC ACID, DI(HYDROXYETHYL)ETHER, ...
Authors:Shishiuchi, R, Kang, H, Tagami, T, Okuyama, M.
Deposit date:2022-05-14
Release date:2023-01-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.708 Å)
Cite:Discovery of alpha-l-Glucosidase Raises the Possibility of alpha-l-Glucosides in Nature.
Acs Omega, 7, 2022
2ZK9
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BU of 2zk9 by Molmil
Crystal Structure of Protein-glutaminase
Descriptor: GLYCEROL, Protein-glutaminase, SODIUM ION
Authors:Hashizume, R.
Deposit date:2008-03-13
Release date:2009-03-17
Last modified:2012-08-29
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Crystal structures of protein glutaminase and its pro forms converted into enzyme-substrate complex
J.Biol.Chem., 286, 2011
3A56
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BU of 3a56 by Molmil
Crystal structure of pro- protein-glutaminase
Descriptor: CITRIC ACID, Protein-glutaminase
Authors:Hashizume, R, Yamaguchi, S, Mikami, B.
Deposit date:2009-07-31
Release date:2010-08-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.728 Å)
Cite:Crystal structures of protein glutaminase and its pro forms converted into enzyme-substrate complex
J.Biol.Chem., 286, 2011
2YVU
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BU of 2yvu by Molmil
Crystal structure of APE1195
Descriptor: Probable adenylyl-sulfate kinase
Authors:Ishii, R, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-15
Release date:2007-10-16
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of APE1195
To be published
2YVT
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BU of 2yvt by Molmil
Crystal structure of aq_1956
Descriptor: Hypothetical protein aq_1956
Authors:Ishii, R, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-15
Release date:2007-10-16
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of aq_1956
To be Published
1XQD
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BU of 1xqd by Molmil
Crystal structure of P450NOR complexed with 3-pyridinealdehyde adenine dinucleotide
Descriptor: CYTOCHROME P450 55A1, NICOTINIC ACID ADENINE DINUCLEOTIDE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Oshima, R, Fushinobu, S, Takaya, N, Su, F, Wakagi, T, Shoun, H.
Deposit date:2004-10-12
Release date:2004-10-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural evidence for direct hydride transfer from NADH to cytochrome P450nor
J.Mol.Biol., 342, 2004
1ULW
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BU of 1ulw by Molmil
Crystal structure of P450nor Ser73Gly/Ser75Gly mutant
Descriptor: Cytochrome P450 55A1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Oshima, R, Fushinobu, S, Su, F, Li, Z, Takaya, N, Shoun, H.
Deposit date:2003-09-16
Release date:2004-10-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural evidence for direct hydride transfer from NADH to cytochrome P450nor
J.Mol.Biol., 342, 2004
1WW1
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BU of 1ww1 by Molmil
Crystal structure of tRNase Z from Thermotoga maritima
Descriptor: ZINC ION, tRNase Z
Authors:Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-12-30
Release date:2005-02-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of the tRNA 3' Processing Endoribonuclease tRNase Z from Thermotoga maritima
J.Biol.Chem., 280, 2005
2E7Y
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BU of 2e7y by Molmil
High resolution structure of T. maritima tRNase Z
Descriptor: S-1,2-PROPANEDIOL, SULFATE ION, ZINC ION, ...
Authors:Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-01-15
Release date:2007-09-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:The structure of the flexible arm of Thermotoga maritima tRNase Z differs from those of homologous enzymes
Acta Crystallogr.,Sect.F, 63, 2007
2EY4
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BU of 2ey4 by Molmil
Crystal Structure of a Cbf5-Nop10-Gar1 Complex
Descriptor: Probable tRNA pseudouridine synthase B, Ribosome biogenesis protein Nop10, ZINC ION, ...
Authors:Rashid, R, Liang, B, Li, H, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2005-11-09
Release date:2006-01-24
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Crystal structure of a Cbf5-Nop10-Gar1 complex and implications in RNA-guided pseudouridylation and dyskeratosis congenita.
Mol.Cell, 21, 2006
6U0S
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BU of 6u0s by Molmil
Crystal structure of the flavin-dependent monooxygenase PieE in complex with FAD and substrate
Descriptor: 2,4-dichlorophenol 6-monooxygenase, 2-[(2E,5E,7E,9R,10R,11E)-10-hydroxy-3,7,9,11-tetramethyltrideca-2,5,7,11-tetraen-1-yl]-6-methoxy-3-methylpyridin-4-ol, CHLORIDE ION, ...
Authors:Shi, R, Manenda, M.
Deposit date:2019-08-14
Release date:2020-03-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Structural analyses of the Group A flavin-dependent monooxygenase PieE reveal a sliding FAD cofactor conformation bridging OUT and IN conformations.
J.Biol.Chem., 295, 2020
6U0P
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BU of 6u0p by Molmil
Crystal structure of PieE, the flavin-dependent monooxygenase involved in the biosynthesis of piericidin A1
Descriptor: 2,4-dichlorophenol 6-monooxygenase, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Shi, R, Manenda, M, Picard, M.-E.
Deposit date:2019-08-14
Release date:2020-03-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Structural analyses of the Group A flavin-dependent monooxygenase PieE reveal a sliding FAD cofactor conformation bridging OUT and IN conformations.
J.Biol.Chem., 295, 2020
6UQV
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BU of 6uqv by Molmil
Crystal structure of ChoE, a bacterial acetylcholinesterase from Pseudomonas aeruginosa
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, BUTANOIC ACID, CHLORIDE ION, ...
Authors:Shi, R, Pham, V.D, To, T.A.
Deposit date:2019-10-21
Release date:2020-05-13
Last modified:2020-07-08
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural insights into the putative bacterial acetylcholinesterase ChoE and its substrate inhibition mechanism.
J.Biol.Chem., 295, 2020
5CPC
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BU of 5cpc by Molmil
Crystal structure of SopD, a type III secreted virulence effector from Salmonella enterica
Descriptor: Secreted effector protein SopD
Authors:Shi, R, Cygler, M, Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)
Deposit date:2015-07-21
Release date:2015-09-09
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Salmonella Disrupts Host Endocytic Trafficking by SopD2-Mediated Inhibition of Rab7.
Cell Rep, 12, 2015
5CQ9
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BU of 5cq9 by Molmil
Crystal structure of SopD2, a type III secreted virulence effector from Salmonella enterica
Descriptor: 11-mer peptide, Secreted effector protein sopD2
Authors:Shi, R, Cygler, M, Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)
Deposit date:2015-07-21
Release date:2015-09-09
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:Salmonella Disrupts Host Endocytic Trafficking by SopD2-Mediated Inhibition of Rab7.
Cell Rep, 12, 2015
7KEZ
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BU of 7kez by Molmil
Crystal structure of bH1 Fab variant (CDR H3 loop design 16_0325) in complex with VEGF
Descriptor: CHLORIDE ION, Isoform L-VEGF206 of Vascular endothelial growth factor A, anti-VEGF-A Fab bH1 heavy chain, ...
Authors:Shi, R, Manenda, M.S, Picard, M.-E.
Deposit date:2020-10-13
Release date:2021-11-10
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Crystal structure of bH1 Fab CDR H3 loop variants in apo form and in complex with VEGF
to be published
7KF1
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BU of 7kf1 by Molmil
Crystal structure of bH1 Fab variant (CDR H3 loop design 14_0130) in complex with VEGF
Descriptor: CHLORIDE ION, Isoform L-VEGF206 of Vascular endothelial growth factor A, anti-VEGF-A Fab bH1 heavy chain, ...
Authors:Shi, R, Picard, M.-E, Manenda, M.S.
Deposit date:2020-10-13
Release date:2021-11-10
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structure of bH1 Fab CDR H3 loop variants in apo form and in complex with VEGF
to be published
7KF0
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BU of 7kf0 by Molmil
Crystal structure of bH1 Fab variant (CDR H3 loop design 13_0346) in complex with VEGF
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Isoform L-VEGF206 of Vascular endothelial growth factor A, ...
Authors:Shi, R, Picard, M.-E.
Deposit date:2020-10-13
Release date:2021-11-10
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Crystal structure of bH1 Fab CDR H3 loop variants in apo form and in complex with VEGF
to be published
6M9M
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BU of 6m9m by Molmil
Streptococcus mutans AlkD2 bound to inosine-5'-monophosphate
Descriptor: AlkD2, CHLORIDE ION, INOSINIC ACID
Authors:Eichman, B.F, Shi, R.
Deposit date:2018-08-23
Release date:2018-10-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.401 Å)
Cite:Structural Biology of the HEAT-Like Repeat Family of DNA Glycosylases.
Bioessays, 40, 2018
6MXR
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BU of 6mxr by Molmil
Crystal structure of the dimeric bH1-Fab variant [HC-Y33W,HC-D98M,HC-G99M]
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, SODIUM ION, ...
Authors:Shi, R.
Deposit date:2018-10-31
Release date:2019-07-31
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Binding symmetry and surface flexibility mediate antibody self-association.
Mabs, 11, 2019
6MY4
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BU of 6my4 by Molmil
Crystal structure of the dimeric bH1-Fab variant [HC-Y33W,HC-D98M,HC-G99M,LC-S30bR]
Descriptor: 1,2-ETHANEDIOL, anti-VEGF-A Fab fragment bH1 heavy chain, anti-VEGF-A Fab fragment bH1 light chain
Authors:Shi, R, Picard, M.-E, Manenda, M.
Deposit date:2018-11-01
Release date:2019-07-31
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Binding symmetry and surface flexibility mediate antibody self-association.
Mabs, 11, 2019
6MXS
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BU of 6mxs by Molmil
Crystal structure of the dimeric bH1-Fab variant [HC-Y33W,HC-D98F,HC-G99M]
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, SODIUM ION, ...
Authors:Shi, R, Picard, M.-E, Manenda, M.S.
Deposit date:2018-10-31
Release date:2019-07-31
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Binding symmetry and surface flexibility mediate antibody self-association.
Mabs, 11, 2019
6MY5
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BU of 6my5 by Molmil
Crystal structure of the dimeric bH1-Fab variant [HC-Y33W,HC-D98F,HC-G99M,LC-S30bR]
Descriptor: 1,2-ETHANEDIOL, anti-VEGF-A Fab fragment bH1 heavy chain, anti-VEGF-A Fab fragment bH1 light chain
Authors:Shi, R.
Deposit date:2018-11-01
Release date:2019-07-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Binding symmetry and surface flexibility mediate antibody self-association.
Mabs, 11, 2019

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