6J3E
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![BU of 6j3e by Molmil](/molmil-images/mine/6j3e) | Crystal structure of an apo form of the glutathione S-transferase, CsGST63524, of Ceriporiopsis subvermispora | Descriptor: | 1,2-ETHANEDIOL, glutathione S-transferase | Authors: | Osman, W.H.W, Mikami, B, Saka, N, Kondo, K, Nagata, T, Katahira, M. | Deposit date: | 2019-01-04 | Release date: | 2019-02-27 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.455 Å) | Cite: | Structure of a serine-type glutathione S-transferase of Ceriporiopsis subvermispora and identification of the enzymatically important non-canonical residues by functional mutagenesis. Biochem. Biophys. Res. Commun., 510, 2019
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1IQT
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![BU of 1iqt by Molmil](/molmil-images/mine/1iqt) | Solution structure of the C-terminal RNA-binding domain of heterogeneous nuclear ribonucleoprotein D0 (AUF1) | Descriptor: | heterogeneous nuclear ribonucleoprotein D0 | Authors: | Katahira, M, Miyanoiri, Y, Enokizono, Y, Matsuda, G, Nagata, T, Ishikawa, F, Uesugi, S. | Deposit date: | 2001-08-01 | Release date: | 2002-08-07 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | Structure of the C-terminal RNA-binding domain of hnRNP D0 (AUF1), its interactions with RNA and DNA, and change in backbone dynamics upon complex formation with DNA. J.Mol.Biol., 311, 2001
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8IYB
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![BU of 8iyb by Molmil](/molmil-images/mine/8iyb) | Structure insight into substrate recognition and catalysis by feruloyl esterase from Aspergillus sydowii | Descriptor: | 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID, ... | Authors: | Phienluphon, A, Kondo, K, Mikami, B, Nagata, T, Katahira, M. | Deposit date: | 2023-04-04 | Release date: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Structural insights into the molecular mechanisms of substrate recognition and hydrolysis by feruloyl esterase from Aspergillus sydowii. Int.J.Biol.Macromol., 253, 2023
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8IYC
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![BU of 8iyc by Molmil](/molmil-images/mine/8iyc) | Structure insight into substrate recognition and catalysis by feruloyl esterase from Aspergillus sydowii | Descriptor: | 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ... | Authors: | Phienluphon, A, Kondo, K, Mikami, B, Nagata, T, Katahira, M. | Deposit date: | 2023-04-04 | Release date: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Structural insights into the molecular mechanisms of substrate recognition and hydrolysis by feruloyl esterase from Aspergillus sydowii. Int.J.Biol.Macromol., 253, 2023
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8IY8
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![BU of 8iy8 by Molmil](/molmil-images/mine/8iy8) | Structure insight into substrate recognition and catalysis by feruloyl esterase from Aspergillus sydowii | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, Feruloyl esterase | Authors: | Phienluphon, A, Kondo, K, Mikami, B, Nagata, T, Katahira, M. | Deposit date: | 2023-04-04 | Release date: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Structural insights into the molecular mechanisms of substrate recognition and hydrolysis by feruloyl esterase from Aspergillus sydowii. Int.J.Biol.Macromol., 253, 2023
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7EXK
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![BU of 7exk by Molmil](/molmil-images/mine/7exk) | An AA9 LPMO of Ceriporiopsis subvermispora | Descriptor: | 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... | Authors: | Nguyen, H, Kondo, K, Nagata, T, Katahira, M, Mikami, B. | Deposit date: | 2021-05-27 | Release date: | 2022-05-04 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.14 Å) | Cite: | Functional and Structural Characterizations of Lytic Polysaccharide Monooxygenase, Which Cooperates Synergistically with Cellulases, from Ceriporiopsis subvermispora. Acs Sustain Chem Eng, 10, 2022
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2RS2
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![BU of 2rs2 by Molmil](/molmil-images/mine/2rs2) | 1H, 13C, and 15N Chemical Shift Assignments for Musashi1 RBD1:r(GUAGU) complex | Descriptor: | RNA (5'-R(*GP*UP*AP*GP*U)-3'), RNA-binding protein Musashi homolog 1 | Authors: | Ohyama, T, Nagata, T, Tsuda, K, Imai, T, Okano, H, Yamazaki, T, Katahira, M. | Deposit date: | 2011-06-27 | Release date: | 2011-12-28 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Structure of Musashi1 in a complex with target RNA: the role of aromatic stacking interactions Nucleic Acids Res., 2011
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2RU7
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![BU of 2ru7 by Molmil](/molmil-images/mine/2ru7) | Refined structure of RNA aptamer in complex with the partial binding peptide of prion protein | Descriptor: | P16 peptide from Major prion protein, RNA_(5'-R(*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*A)-3') | Authors: | Hayashi, T, Oshima, H, Mashima, T, Nagata, T, Katahira, M, Kinoshita, M. | Deposit date: | 2013-12-24 | Release date: | 2014-05-21 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Binding of an RNA aptamer and a partial peptide of a prion protein: crucial importance of water entropy in molecular recognition. Nucleic Acids Res., 42, 2014
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5X3Z
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![BU of 5x3z by Molmil](/molmil-images/mine/5x3z) | Solution structure of musashi1 RBD2 in complex with RNA | Descriptor: | RNA (5'-R(*GP*UP*AP*GP*U)-3'), RNA-binding protein Musashi homolog 1 | Authors: | Iwaoka, R, Nagata, T, Tsuda, K, Imai, T, Okano, H, Kobayashi, N, Katahira, M. | Deposit date: | 2017-02-09 | Release date: | 2017-12-13 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Structural Insight into the Recognition of r(UAG) by Musashi-1 RBD2, and Construction of a Model of Musashi-1 RBD1-2 Bound to the Minimum Target RNA Molecules, 22, 2017
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5X3Y
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![BU of 5x3y by Molmil](/molmil-images/mine/5x3y) | Refined solution structure of musashi1 RBD2 | Descriptor: | RNA-binding protein Musashi homolog 1 | Authors: | Iwaoka, R, Nagata, T, Tsuda, K, Imai, T, Okano, H, Kobayashi, N, Katahira, M. | Deposit date: | 2017-02-09 | Release date: | 2017-12-13 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Structural Insight into the Recognition of r(UAG) by Musashi-1 RBD2, and Construction of a Model of Musashi-1 RBD1-2 Bound to the Minimum Target RNA Molecules, 22, 2017
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2RUG
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![BU of 2rug by Molmil](/molmil-images/mine/2rug) | Refined solution structure of the first RNA recognition motif domain in CPEB3 | Descriptor: | Cytoplasmic polyadenylation element-binding protein 3 | Authors: | Tsuda, K, Kuwasako, K, Nagata, T, Takahashi, M, Kigawa, T, Kobayashi, N, Guntert, P, Shirouzu, M, Yokoyama, S, Muto, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2014-04-15 | Release date: | 2014-09-17 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Novel RNA recognition motif domain in the cytoplasmic polyadenylation element binding protein 3. Proteins, 82, 2014
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1WEL
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![BU of 1wel by Molmil](/molmil-images/mine/1wel) | Solution structure of RNA binding domain in NP_006038 | Descriptor: | RNA-binding protein 12 | Authors: | Someya, T, Muto, Y, Nagata, T, Suzuki, S, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-05-25 | Release date: | 2005-08-23 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Solution structure of RNA binding domain in NP_006038 To be Published
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1WG1
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![BU of 1wg1 by Molmil](/molmil-images/mine/1wg1) | Solution structure of RNA binding domain in BAB13405(homolog EXC-7) | Descriptor: | KIAA1579 protein | Authors: | Tsuda, K, Muto, Y, Nagata, T, Suzuki, S, Someya, T, Kigawa, T, Terada, T, Shirouzu, M, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-05-27 | Release date: | 2004-11-27 | Last modified: | 2022-03-02 | Method: | SOLUTION NMR | Cite: | Solution structure of RNA binding domain in BAB13405(homolog EXC-7) To be Published
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1WI8
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![BU of 1wi8 by Molmil](/molmil-images/mine/1wi8) | Solution structure of the RNA binding domain of eukaryotic initiation factor 4B | Descriptor: | Eukaryotic translation initiation factor 4B | Authors: | Suzuki, S, Muto, Y, Nagata, T, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-05-28 | Release date: | 2004-11-28 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Solution structure of the RNA binding domain of eukaryotic initiation factor 4B To be Published
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1WI6
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![BU of 1wi6 by Molmil](/molmil-images/mine/1wi6) | Solution structure of the RNA binding domain from mouse hypothetical protein BAB23670 | Descriptor: | Hypothetical protein (RIKEN cDNA 1300006N24) | Authors: | Suzuki, S, Muto, Y, Nagata, T, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-05-28 | Release date: | 2005-06-07 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Solution structure of the RNA binding domain from mouse hypothetical protein BAB23670 To be Published
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2RPB
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![BU of 2rpb by Molmil](/molmil-images/mine/2rpb) | |
2DNL
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![BU of 2dnl by Molmil](/molmil-images/mine/2dnl) | Solution structure of RNA binding domain in Cytoplasmic polyadenylation element binding protein 3 | Descriptor: | cytoplasmic polyadenylation element binding protein 3 | Authors: | Tsuda, K, Nagata, T, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2006-04-26 | Release date: | 2006-10-26 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Solution structure of RNA binding domain in Cytoplasmic polyadenylation element binding protein 3 To be Published
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2DNY
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![BU of 2dny by Molmil](/molmil-images/mine/2dny) | Solution structure of the third RNA binding domain of FBP-interacting repressor, SIAHBP1 | Descriptor: | Fuse-binding protein-interacting repressor, isoform b | Authors: | Suzuki, S, Nagata, T, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2006-04-27 | Release date: | 2007-04-17 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Solution structure of the third RNA binding domain of FBP-interacting repressor, SIAHBP1 To be Published
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2EI6
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![BU of 2ei6 by Molmil](/molmil-images/mine/2ei6) | FACTOR XA IN COMPLEX WITH THE INHIBITOR (-)-cis-N1-[(5-Chloroindol-2-yl)carbonyl]-N2-[(5-methyl-4,5,6,7-tetrahydrothiazolo[5,4-c]pyridin-2-yl)carbonyl]-1,2-cyclohexanediamine | Descriptor: | CALCIUM ION, Coagulation factor X, heavy chain, ... | Authors: | Suzuki, M. | Deposit date: | 2007-03-12 | Release date: | 2008-03-18 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Cycloalkanediamine derivatives as novel blood coagulation factor Xa inhibitors. Bioorg.Med.Chem.Lett., 17, 2007
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2EI7
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![BU of 2ei7 by Molmil](/molmil-images/mine/2ei7) | |
2EI8
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![BU of 2ei8 by Molmil](/molmil-images/mine/2ei8) | FACTOR XA IN COMPLEX WITH THE INHIBITOR (1S,2R,4S)-N1-[(5-chloroindol-2-yl)carbonyl]-4-(N,N-dimethylcarbamoyl)-N2-[(5-methyl-4,5,6,7-tetrahydrothiazolo[5,4-c]pyridin-2-yl)carbonyl]-1,2-cyclohexanediamine | Descriptor: | CALCIUM ION, Coagulation factor X, heavy chain, ... | Authors: | Suzuki, M. | Deposit date: | 2007-03-12 | Release date: | 2008-03-18 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Discovery of N-{(1R,2S,5S)-2-{[(5-Chloroindol-2-yl)carbonyl]amino}-5-[(dimethylamino)carbonyl]cyclohexyl}-5-methyl-4,5,6,7-tetrahydrothiazolo[5,4-c]pyridine-2-carboxamide hydrochloride: A Novel, Potent and Orally Active Direct Inhibitor of Factor Xa To be Published
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7YTB
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![BU of 7ytb by Molmil](/molmil-images/mine/7ytb) | Crystal structure of Kin4B8 | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Kin4B8, RETINAL | Authors: | Murakoshi, S, Chazan, A, Shihoya, W, Beja, O, Nureki, O. | Deposit date: | 2022-08-14 | Release date: | 2023-03-15 | Last modified: | 2023-03-29 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Phototrophy by antenna-containing rhodopsin pumps in aquatic environments. Nature, 615, 2023
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3IIT
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![BU of 3iit by Molmil](/molmil-images/mine/3iit) | Factor XA in complex with a cis-1,2-diaminocyclohexane derivative | Descriptor: | 7-chloro-N-[(1S,2R,4S)-4-(dimethylcarbamoyl)-2-{[(5-methyl-5,6-dihydro-4H-pyrrolo[3,4-d][1,3]thiazol-2-yl)carbonyl]amino}cyclohexyl]isoquinoline-3-carboxamide, Activated factor Xa heavy chain, CALCIUM ION, ... | Authors: | Suzuki, M. | Deposit date: | 2009-08-03 | Release date: | 2010-08-04 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Design, synthesis, and SAR of cis-1,2-diaminocyclohexane derivatives as potent factor Xa inhibitors. Part II: exploration of 6-6 fused rings as alternative S1 moieties. Bioorg.Med.Chem., 17, 2009
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7PL9
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![BU of 7pl9 by Molmil](/molmil-images/mine/7pl9) | |
1X0F
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![BU of 1x0f by Molmil](/molmil-images/mine/1x0f) | Complex structure of the C-terminal RNA-binding domain of hnRNP D(AUF1) with telomeric DNA | Descriptor: | 5'-D(P*TP*AP*GP*G)-3', Heterogeneous nuclear ribonucleoprotein D0 | Authors: | Enokizono, Y, Konishi, Y, Nagata, K, Ouhashi, K, Uesugi, S, Ishikawa, F, Katahira, M. | Deposit date: | 2005-03-22 | Release date: | 2005-04-05 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Structure of hnRNP D complexed with single-stranded telomere DNA and unfolding of the quadruplex by heterogeneous nuclear ribonucleoprotein D. J.Biol.Chem., 280, 2005
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