Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5MVP
DownloadVisualize
BU of 5mvp by Molmil
Crystal structure of an A-DNA dodecamer containing the GGGCCC motif
Descriptor: DNA, POTASSIUM ION
Authors:Hardwick, J.S, Ptchelkine, D, Phillips, S.E.V, Brown, T.
Deposit date:2017-01-17
Release date:2017-05-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.606 Å)
Cite:5-Formylcytosine does not change the global structure of DNA.
Nat. Struct. Mol. Biol., 24, 2017
5MVK
DownloadVisualize
BU of 5mvk by Molmil
Crystal structure of an unmodified A-DNA dodecamer containing 3 consecutive CpG steps
Descriptor: DNA
Authors:Hardwick, J.S, Ptchelkine, D, Phillips, S.E.V, Brown, T.
Deposit date:2017-01-16
Release date:2017-05-10
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.531 Å)
Cite:5-Formylcytosine does not change the global structure of DNA.
Nat. Struct. Mol. Biol., 24, 2017
5MVL
DownloadVisualize
BU of 5mvl by Molmil
Crystal structure of an A-DNA dodecamer containing 5-bromouracil
Descriptor: Brominated DNA dodecamer, MAGNESIUM ION
Authors:Hardwick, J.S, Ptchelkine, D, Phillips, S.E.V, Brown, T.
Deposit date:2017-01-16
Release date:2017-05-10
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.405 Å)
Cite:5-Formylcytosine does not change the global structure of DNA.
Nat. Struct. Mol. Biol., 24, 2017
6QJR
DownloadVisualize
BU of 6qjr by Molmil
Crystal structure of a DNA dodecamer containing a tetramethylpyrrolinoxyl (nitroxide) spin label
Descriptor: DNA (5'-D(*CP*GP*CP*AP*AP*AP*AP*AP*AP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*TP*TP*TP*TP*TP*(5NO)P*GP*CP*G)-3')
Authors:Hardwick, J.S, Haugland, M.M, Ptchelkine, D, Brown, T, Anderson, E.E.
Deposit date:2019-01-24
Release date:2020-02-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:2'-Alkynyl spin-labelling is a minimally perturbing tool for DNA structural analysis.
Nucleic Acids Res., 48, 2020
4C64
DownloadVisualize
BU of 4c64 by Molmil
ULTRA HIGH RESOLUTION DICKERSON-DREW DODECAMER B-DNA
Descriptor: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*GP)-3', MAGNESIUM ION
Authors:Mcdonough, M, El-Sagheer, A.H, Brown, T, Schofield, C.J.
Deposit date:2013-09-17
Release date:2013-10-02
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Structural insights into how 5-hydroxymethylation influences transcription factor binding.
Chem. Commun. (Camb.), 50, 2014
4C5X
DownloadVisualize
BU of 4c5x by Molmil
Ultra High Resolution Dickerson-Drew dodecamer B-DNA with 5-Hydroxymethyl-cytosine Modification
Descriptor: 5'-D(CP*GP*CP*GP*AP*AP*TP*TP*5HCP*GP*CP*GP)-3', MAGNESIUM ION
Authors:McDonough, M, El-Sagheer, A.H, Brown, T, Schofield, C.J.
Deposit date:2013-09-16
Release date:2013-10-02
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural insights into how 5-hydroxymethylation influences transcription factor binding.
Chem. Commun. (Camb.), 50, 2014
4C63
DownloadVisualize
BU of 4c63 by Molmil
ULTRA HIGH RESOLUTION DICKERSON-DREW DODECAMER B-DNA WITH 5- METHYLCYSTOSINE MODIFICATION
Descriptor: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*5CMP*GP*CP*GP)-3', MAGNESIUM ION
Authors:Mcdonough, M, El-Sagheer, A.H, Brown, T, Schofield, C.J.
Deposit date:2013-09-17
Release date:2013-10-02
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Structural insights into how 5-hydroxymethylation influences transcription factor binding.
Chem. Commun. (Camb.), 50, 2014
404D
DownloadVisualize
BU of 404d by Molmil
CRYSTAL STRUCTURE OF THE RNA/DNA HYBRID R(GAAGAGAAGC). D(GCTTCTCTTC)
Descriptor: 5'-D(*GP*CP*TP*TP*CP*TP*CP*TP*TP*C)-3', 5'-R(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3'
Authors:Conn, G, Brown, T, Leonard, G.A.
Deposit date:1998-06-12
Release date:1998-12-14
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The crystal structure of the RNA/DNA hybrid r(GAAGAGAAGC). d(GCTTCTCTTC) shows significant differences to that found in solution.
Nucleic Acids Res., 27, 1999
2ANA
DownloadVisualize
BU of 2ana by Molmil
THE CRYSTAL STRUCTURE OF D(G-G-G-G-C-C-C-C). A MODEL FOR POLY(DG).POLY(DC)
Descriptor: DNA (5'-D(*GP*GP*GP*GP*CP*CP*CP*C)-3')
Authors:McCall, M, Brown, T, Kennard, O.
Deposit date:1985-08-05
Release date:1985-08-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The crystal structure of d(G-G-G-G-C-C-C-C). A model for poly(dG).poly(dC).
J.Mol.Biol., 183, 1985
2X71
DownloadVisualize
BU of 2x71 by Molmil
Structural basis for the interaction of lactivicins with serine beta- lactamases
Descriptor: (2E)-2-{[(2S)-2-(ACETYLAMINO)-2-CARBOXYETHOXY]IMINO}PENTANEDIOIC ACID, BETA-LACTAMASE, ETHANOL, ...
Authors:Sauvage, E, Herman, R, Kerff, F, Rocaboy, M, Charlier, P.
Deposit date:2010-02-22
Release date:2010-07-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis for the Interaction of Lactivicins with Serine Beta-Lactamases.
J.Med.Chem., 53, 2010
7NRO
DownloadVisualize
BU of 7nro by Molmil
Crystal structure of AlkB in complex with manganese and N-(4-((6-((carboxymethyl)carbamoyl)-5-hydroxypyridin-2-yl)amino)phenyl)-N-oxohydroxylammonium
Descriptor: 2-[[6-[(4-nitrophenyl)amino]-3-oxidanyl-pyridin-2-yl]carbonylamino]ethanoic acid, Alpha-ketoglutarate-dependent dioxygenase AlkB, MANGANESE (II) ION
Authors:Shishodia, S, Maheswaran, P, Leissing, T, Aik, W.S, McDonough, M.A, Schofield, C.J.
Deposit date:2021-03-04
Release date:2021-10-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Structure-Based Design of Selective Fat Mass and Obesity Associated Protein (FTO) Inhibitors.
J.Med.Chem., 64, 2021
1LAU
DownloadVisualize
BU of 1lau by Molmil
URACIL-DNA GLYCOSYLASE
Descriptor: DNA (5'-D(*TP*TP*T)-3'), PROTEIN (URACIL-DNA GLYCOSYLASE (E.C.3.2.2.-))
Authors:Pearl, L.H, Savva, R.
Deposit date:1996-01-03
Release date:1996-06-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structural basis of specific base-excision repair by uracil-DNA glycosylase.
Nature, 373, 1995
1D63
DownloadVisualize
BU of 1d63 by Molmil
CRYSTAL STRUCTURE OF A BERENIL-D(CGCAAATTTGCG) COMPLEX; AN EXAMPLE OF DRUG-DNA RECOGNITION BASED ON SEQUENCE-DEPENDENT STRUCTURAL FEATURES
Descriptor: BERENIL, DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3'), MAGNESIUM ION
Authors:Brown, D.G, Sanderson, M.R, Garman, E, Neidle, S.
Deposit date:1992-03-02
Release date:1993-01-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a berenil-d(CGCAAATTTGCG) complex. An example of drug-DNA recognition based on sequence-dependent structural features.
J.Mol.Biol., 226, 1992
7E8Z
DownloadVisualize
BU of 7e8z by Molmil
Crystal structure of the human fat mass and obesity associated protein (FTO) in complex with SS81
Descriptor: 2-[[6-[(4-nitrophenyl)amino]-3-oxidanyl-pyridin-2-yl]carbonylamino]ethanoic acid, Alpha-ketoglutarate-dependent dioxygenase FTO, ZINC ION
Authors:Tam, N.Y, Ng, Y.M, Shishodia, S, McDonough, M.A, Schofield, C.J, Aik, W.S.
Deposit date:2021-03-03
Release date:2021-10-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structure-Based Design of Selective Fat Mass and Obesity Associated Protein (FTO) Inhibitors.
J.Med.Chem., 64, 2021
1UDH
DownloadVisualize
BU of 1udh by Molmil
THE STRUCTURAL BASIS OF SPECIFIC BASE EXCISION REPAIR BY URACIL-DNA GLYCOSYLASE
Descriptor: SULFATE ION, URACIL, URACIL-DNA GLYCOSYLASE
Authors:Pearl, L.H, Savva, R.
Deposit date:1995-10-30
Release date:1996-03-08
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The structural basis of specific base-excision repair by uracil-DNA glycosylase.
Nature, 373, 1995
1UDG
DownloadVisualize
BU of 1udg by Molmil
THE STRUCTURAL BASIS OF SPECIFIC BASE EXCISION REPAIR BY URACIL-DNA GLYCOSYLASE
Descriptor: SULFATE ION, URACIL-DNA GLYCOSYLASE
Authors:Pearl, L.H, Savva, R.
Deposit date:1995-06-23
Release date:1996-01-29
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The structural basis of specific base-excision repair by uracil-DNA glycosylase.
Nature, 373, 1995
4QHO
DownloadVisualize
BU of 4qho by Molmil
Crystal structure of the human fat mass and obesity associated protein (FTO) in complex with CCO10
Descriptor: Alpha-ketoglutarate-dependent dioxygenase FTO, N-{[3-hydroxy-6-(naphthalen-1-yl)pyridin-2-yl]carbonyl}glycine, ZINC ION
Authors:Aik, W.S, Clunie-O'Connor, C, McDonough, M.A, Schofield, C.J.
Deposit date:2014-05-28
Release date:2015-06-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Structure-Based Design of Selective Fat Mass and Obesity Associated Protein (FTO) Inhibitors.
J.Med.Chem., 64, 2021
2WPX
DownloadVisualize
BU of 2wpx by Molmil
Tandem GNAT protein from the clavulanic acid biosynthesis pathway (with AcCoA)
Descriptor: ACETYL COENZYME *A, GLYCEROL, ORF14
Authors:Iqbal, A, Arunlanantham, H, McDonough, M.A, Chowdhury, R, Clifton, I.J.
Deposit date:2009-08-11
Release date:2009-12-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Crystallographic and mass spectrometric analyses of a tandem GNAT protein from the clavulanic acid biosynthesis pathway.
Proteins, 78, 2010
2WPW
DownloadVisualize
BU of 2wpw by Molmil
Tandem GNAT protein from the clavulanic acid biosynthesis pathway (without AcCoA)
Descriptor: ACETYL COENZYME *A, ORF14
Authors:Iqbal, A, Arunlanantham, H, McDonough, M.A, Chowdhury, R, Clifton, I.J.
Deposit date:2009-08-11
Release date:2009-12-29
Last modified:2018-03-28
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Crystallographic and mass spectrometric analyses of a tandem GNAT protein from the clavulanic acid biosynthesis pathway.
Proteins, 78, 2010
1AT4
DownloadVisualize
BU of 1at4 by Molmil
INTRAMOLECULAR DNA TRIPLEX CONTAINING A NON-NUCLEOTIDE LINKER (GAGAGA-X-TCTCCT-X-CTCTCT), NMR, 7 STRUCTURES
Descriptor: DNA (5'-D(*GP*AP*GP*AP*GP*AP*DOP*TP*CP*TP*CP*TP*CP*DOP*CP*TP*CP*TP*CP*T)-3')
Authors:Bartley, J.P.
Deposit date:1997-08-18
Release date:1998-02-18
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution conformation of an intramolecular DNA triplex containing a nonnucleotide linker: comparison with the DNA duplex.
Biochemistry, 36, 1997
1AO9
DownloadVisualize
BU of 1ao9 by Molmil
INTRAMOLECULAR DNA DUPLEX CONTAINING A NON-NUCLEOTIDE LINKER (GAGAGA-X-TCTCCT), NMR, 12 STRUCTURES
Descriptor: DNA (5'-D(*GP*AP*GP*AP*GP*AP*DOP*TP*CP*TP*CP*TP*C)-3')
Authors:Bartley, J.P.
Deposit date:1997-07-22
Release date:1998-01-28
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution conformation of an intramolecular DNA triplex containing a nonnucleotide linker: comparison with the DNA duplex.
Biochemistry, 36, 1997
1LVL
DownloadVisualize
BU of 1lvl by Molmil
THE REFINED STRUCTURE OF PSEUDOMONAS PUTIDA LIPOAMIDE DEHYDROGENASE COMPLEXED WITH NAD+ AT 2.45 ANGSTROMS RESOLUTION
Descriptor: DIHYDROLIPOAMIDE DEHYDROGENASE, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Mattevi, A, Hol, W.G.J.
Deposit date:1992-12-16
Release date:1994-01-31
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:The refined crystal structure of Pseudomonas putida lipoamide dehydrogenase complexed with NAD+ at 2.45 A resolution.
Proteins, 13, 1992
4II9
DownloadVisualize
BU of 4ii9 by Molmil
Crystal structure of Weissella viridescens FemXVv non-ribosomal amino acid transferase in complex with a peptidyl-RNA conjugate
Descriptor: 5-mer peptide, FemX, GLYCEROL, ...
Authors:Li de la Sierra-Gallay, I, Fonvielle, M, van Tilbeurgh, H, Arthur, M, Etheve-Quelquejeu, M.
Deposit date:2012-12-20
Release date:2013-07-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:The Structure of FemXWv in Complex with a Peptidyl-RNA Conjugate: Mechanism of Aminoacyl Transfer from Ala-tRNA(Ala) to Peptidoglycan Precursors
Angew.Chem.Int.Ed.Engl., 52, 2013
1UDI
DownloadVisualize
BU of 1udi by Molmil
NUCLEOTIDE MIMICRY IN THE CRYSTAL STRUCTURE OF THE URACIL-DNA GLYCOSYLASE-URACIL GLYCOSYLASE INHIBITOR PROTEIN COMPLEX
Descriptor: URACIL-DNA GLYCOSYLASE, URACIL-DNA GLYCOSYLASE INHIBITOR PROTEIN
Authors:Pearl, L.H, Savva, R.
Deposit date:1995-10-30
Release date:1996-03-08
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Nucleotide mimicry in the crystal structure of the uracil-DNA glycosylase-uracil glycosylase inhibitor protein complex.
Nat.Struct.Biol., 2, 1995
<123

 

222036

건을2024-07-03부터공개중

PDB statisticsPDBj update infoContact PDBjnumon