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X-ray Structure of Clostridium Perfringens Sortase B
Descriptor:	Uncharacterized protein Sortase B
Authors:	Kamitori, S, Yoshida, H, Tamai, E.
Deposit date:	2015-12-28
Release date:	2016-12-28
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	X-ray structure of Clostridium perfringens sortase B cysteine transpeptidase Biochem. Biophys. Res. Commun., 493, 2017

4KRU

X-ray structure of catalytic domain of endolysin from clostridium perfringens phage phiSM101
Descriptor:	2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, Autolytic lysozyme, ...
Authors:	Kamitori, S, Yoshida, H.
Deposit date:	2013-05-17
Release date:	2014-04-02
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (1.37 Å)
Cite:	X-ray structure of a novel endolysin encoded by episomal phage phiSM101 of Clostridium perfringens. Mol.Microbiol., 92, 2014

4KRT

X-ray structure of endolysin from clostridium perfringens phage phiSM101
Descriptor:	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, Autolytic lysozyme, ...
Authors:	Kamitori, S, Yoshida, H.
Deposit date:	2013-05-17
Release date:	2014-04-02
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (1.92 Å)
Cite:	X-ray structure of a novel endolysin encoded by episomal phage phiSM101 of Clostridium perfringens. Mol.Microbiol., 92, 2014

7D6P

X-ray structure of the intermolecular complex of Clostridium perfringens sortase C with the C-terminal cell wall sorting signal motif.
Descriptor:	GLYCEROL, SULFATE ION, Sortase family protein
Authors:	Kamitori, S, Tamai, E.
Deposit date:	2020-10-01
Release date:	2021-06-02
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (2.38 Å)
Cite:	X-ray structures of Clostridium perfringens sortase C with C-terminal cell wall sorting motif of LPST demonstrate role of subsite for substrate-binding and structural variations of catalytic site. Biochem.Biophys.Res.Commun., 554, 2021

7D6T

X-ray structure of Clostridium perfringens sortase C with the C-terminal cell wall sorting motif.
Descriptor:	Sortase family protein
Authors:	Kamitori, S, Tamai, E.
Deposit date:	2020-10-01
Release date:	2021-06-02
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (1.68 Å)
Cite:	X-ray structures of Clostridium perfringens sortase C with C-terminal cell wall sorting motif of LPST demonstrate role of subsite for substrate-binding and structural variations of catalytic site. Biochem.Biophys.Res.Commun., 554, 2021

8GSY

X-ray structure of Clostridium perfringens pili protein B N-terminal domain
Descriptor:	Peptidoglycan bound protein
Authors:	Kamitori, S, Yamada, M, Tamai, E.
Deposit date:	2022-09-07
Release date:	2023-06-07
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (1.55 Å)
Cite:	Structural and biochemical characterization of Clostridium perfringens pili protein B collagen-binding domains. Febs Lett., 597, 2023

8GSX

X-ray structure of Clostridium perfringens pili protein B collagen-binding domains
Descriptor:	ACETATE ION, pili protein
Authors:	Kamitori, S, Yamada, M, Tamai, E.
Deposit date:	2022-09-07
Release date:	2023-06-07
Last modified:	2024-05-29
Method:	X-RAY DIFFRACTION (2.86 Å)
Cite:	Structural and biochemical characterization of Clostridium perfringens pili protein B collagen-binding domains. Febs Lett., 597, 2023

7CFL

X-ray structure of autolysin Acd24020 catalytic domain from Clostridium difficile
Descriptor:	CITRATE ANION, Putative cell wall hydrolase phosphatase-associated protein
Authors:	Kamitori, S, Tamai, E.
Deposit date:	2020-06-26
Release date:	2020-11-25
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (1.56 Å)
Cite:	Structural and biochemical characterizations of the novel autolysin Acd24020 from Clostridioides difficile and its full-function catalytic domain as a lytic enzyme. Mol.Microbiol., 115, 2021

6IXY

X-ray structure of major pilin from C. perfringens SM101
Descriptor:	pilin
Authors:	Kamitori, S, Tamai, E.
Deposit date:	2018-12-12
Release date:	2019-08-14
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.72 Å)
Cite:	Structures of major pilins in Clostridium perfringens demonstrate dynamic conformational change. Acta Crystallogr D Struct Biol, 75, 2019

8YXN

X-ray structure of Clostridium perfringens autolysin catalytic domain in the P1 form
Descriptor:	Cell surface protein
Authors:	Kamitori, S, Tamai, E.
Deposit date:	2024-04-02
Release date:	2024-05-15
Method:	X-RAY DIFFRACTION (1.6 Å)
Cite:	X-ray structure and mutagenesis analyses of Clostridioides difficile endolysin Ecd09610 glucosaminidase domain. Biochem.Biophys.Res.Commun., 715, 2024

8YXK

X-ray structure of Clostridioides difficile endolysin Ecd09610 glucosaminidase domain.
Descriptor:	Phage cell wall hydrolase
Authors:	Kamitori, S, Tamai, E.
Deposit date:	2024-04-02
Release date:	2024-05-15
Method:	X-RAY DIFFRACTION (1.87 Å)
Cite:	X-ray structure and mutagenesis analyses of Clostridioides difficile endolysin Ecd09610 glucosaminidase domain. Biochem.Biophys.Res.Commun., 715, 2024

6IXZ

X-ray structure of sortase C from Clostridium perfringens SM101
Descriptor:	Sortase family protein
Authors:	Kamitori, S, Tamai, E.
Deposit date:	2018-12-12
Release date:	2019-08-14
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.98 Å)
Cite:	Structures of major pilins in Clostridium perfringens demonstrate dynamic conformational change. Acta Crystallogr D Struct Biol, 75, 2019

6L68

X-ray structure of human galectin-10 in complex with D-allose
Descriptor:	Galectin-10, beta-D-allopyranose
Authors:	Kamitori, S.
Deposit date:	2019-10-28
Release date:	2020-03-04
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.92 Å)
Cite:	Structures of human galectin-10/monosaccharide complexes demonstrate potential of monosaccharides as effectors in forming Charcot-Leyden crystals. Biochem.Biophys.Res.Commun., 2020

6L67

X-ray structure of human galectin-10 in complex with D-galactose
Descriptor:	Galectin-10, beta-D-galactopyranose
Authors:	Kamitori, S.
Deposit date:	2019-10-28
Release date:	2020-03-04
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.97 Å)
Cite:	Structures of human galectin-10/monosaccharide complexes demonstrate potential of monosaccharides as effectors in forming Charcot-Leyden crystals. Biochem.Biophys.Res.Commun., 2020

6L6D

X-ray structure of human galectin-10 in complex with D-N-acetylgalactosamine
Descriptor:	2-acetamido-2-deoxy-beta-D-galactopyranose, Galectin-10
Authors:	Kamitori, S.
Deposit date:	2019-10-28
Release date:	2020-03-04
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.93 Å)
Cite:	Structures of human galectin-10/monosaccharide complexes demonstrate potential of monosaccharides as effectors in forming Charcot-Leyden crystals. Biochem.Biophys.Res.Commun., 2020

6L6B

X-ray structure of human galectin-10 in complex with L-fucose
Descriptor:	Galectin-10, beta-L-fucopyranose
Authors:	Kamitori, S.
Deposit date:	2019-10-28
Release date:	2020-03-04
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.802 Å)
Cite:	Structures of human galectin-10/monosaccharide complexes demonstrate potential of monosaccharides as effectors in forming Charcot-Leyden crystals. Biochem.Biophys.Res.Commun., 2020

6L6C

X-ray structure of human galectin-10 in complex with D-arabinose
Descriptor:	Galectin-10, alpha-D-arabinopyranose
Authors:	Kamitori, S.
Deposit date:	2019-10-28
Release date:	2020-03-04
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.77 Å)
Cite:	Structures of human galectin-10/monosaccharide complexes demonstrate potential of monosaccharides as effectors in forming Charcot-Leyden crystals. Biochem.Biophys.Res.Commun., 2020

6L64

X-ray structure of human galectin-10 in complex with D-glucose
Descriptor:	Galectin-10, beta-D-glucopyranose
Authors:	Kamitori, S.
Deposit date:	2019-10-28
Release date:	2020-03-04
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.08 Å)
Cite:	Structures of human galectin-10/monosaccharide complexes demonstrate potential of monosaccharides as effectors in forming Charcot-Leyden crystals. Biochem.Biophys.Res.Commun., 2020

6L6A

X-ray structure of human galectin-10 in complex with D-mannose
Descriptor:	Galectin-10, beta-D-mannopyranose
Authors:	Kamitori, S.
Deposit date:	2019-10-28
Release date:	2020-03-04
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.81 Å)
Cite:	Structures of human galectin-10/monosaccharide complexes demonstrate potential of monosaccharides as effectors in forming Charcot-Leyden crystals. Biochem.Biophys.Res.Commun., 2020

2D58

Human microglia-specific protein Iba1
Descriptor:	Allograft inflammatory factor 1, NICKEL (II) ION
Authors:	Kamitori, S.
Deposit date:	2005-10-31
Release date:	2006-10-10
Last modified:	2024-03-13
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	X-ray Structures of the Microglia/Macrophage-specific Protein Iba1 from Human and Mouse Demonstrate Novel Molecular Conformation Change Induced by Calcium binding J.Mol.Biol., 364, 2006

3B4X

Crystal Structure Analysis of Sulfolobus tokodaii strain7 cytochrom P450
Descriptor:	367aa long hypothetical cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE
Authors:	Kamitori, S, Yoshida, H, Ohtaki, A, Nakamura, N.
Deposit date:	2007-10-24
Release date:	2008-11-04
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (1.94 Å)
Cite:	Monooxygenation by Thermophilic Cytochrome P450 via Direct Electron Transfer from NADH without Redox Partner To be Published

7WRR

X-ray structure of Thermus thermophilus HB8 transketorase in complex with TPP and MES
Descriptor:	2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, THIAMINE DIPHOSPHATE, ...
Authors:	Kamitori, S, Yoshihara, A.
Deposit date:	2022-01-27
Release date:	2022-12-07
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (2.01 Å)
Cite:	Structural and biochemical characterizations of Thermus thermophilus HB8 transketolase producing a heptulose. Appl.Microbiol.Biotechnol., 107, 2023

7WRT

X-ray structure ofThermus thermophilus HB8 transketorase demonstrate in complex with TPP and D-erythrose-4-phosphate
Descriptor:	CALCIUM ION, ERYTHOSE-4-PHOSPHATE, THIAMINE DIPHOSPHATE, ...
Authors:	Kamitori, S, Yoshihara, A.
Deposit date:	2022-01-27
Release date:	2022-12-07
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (2.25 Å)
Cite:	Structural and biochemical characterizations of Thermus thermophilus HB8 transketolase producing a heptulose. Appl.Microbiol.Biotechnol., 107, 2023

3VKL

Protease-resistant mutant form of human Galectin-8 in complex with two lactose molecules
Descriptor:	1,2-ETHANEDIOL, Galectin-8, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:	Kamitori, S, Yoshida, H.
Deposit date:	2011-11-18
Release date:	2012-09-12
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.55 Å)
Cite:	X-ray structure of a protease-resistant mutant form of human galectin-8 with two carbohydrate recognition domains Febs J., 279, 2012

3VKO

Galectin-8 N-terminal domain in complex with sialyllactosamine
Descriptor:	CHLORIDE ION, Galectin-8, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:	Kamitori, S, Yoshida, H.
Deposit date:	2011-11-18
Release date:	2012-09-12
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.08 Å)
Cite:	X-ray structure of a protease-resistant mutant form of human galectin-8 with two carbohydrate recognition domains Febs J., 279, 2012

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