Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2O82
DownloadVisualize
BU of 2o82 by Molmil
Duplex DNA containing an abasic site with an opposite dC (beta anomer) in 5'-G_AC-3' (10 structure ensemble and averaged structure)
Descriptor: 5'-D(*CP*CP*AP*AP*AP*GP*(AAB)P*AP*CP*CP*GP*GP*G)-3', 5'-D(*CP*CP*CP*GP*GP*TP*CP*CP*TP*TP*TP*GP*G)-3'
Authors:Chen, J, Dupradeau, F.Y, Case, D.A, Turner, C.J, Stubbe, J.
Deposit date:2006-12-11
Release date:2007-11-27
Last modified:2023-11-29
Method:SOLUTION NMR
Cite:DNA oligonucleotides with A, T, G or C opposite an abasic site: structure and dynamics.
Nucleic Acids Res., 36, 2008
2O7Z
DownloadVisualize
BU of 2o7z by Molmil
Duplex DNA containing an abasic site with an opposite T (beta anomer) in 5'-G_AC-3' (10 structure ensemble and averaged structure)
Descriptor: 5'-D(*CP*CP*AP*AP*AP*GP*(AAB)P*AP*CP*CP*GP*GP*G)-3', 5'-D(*CP*CP*CP*GP*GP*TP*TP*CP*TP*TP*TP*GP*G)-3'
Authors:Chen, J, Dupradeau, F.Y, Case, D.A, Turner, C.J, Stubbe, J.
Deposit date:2006-12-11
Release date:2007-11-27
Last modified:2023-11-29
Method:SOLUTION NMR
Cite:DNA oligonucleotides with A, T, G or C opposite an abasic site: structure and dynamics.
Nucleic Acids Res., 36, 2008
2O7W
DownloadVisualize
BU of 2o7w by Molmil
Duplex DNA containing an abasic site with an opposite G (alpha anomer) in 5'-G_AC-3' (10 structure ensemble and averaged structure)
Descriptor: 5'-D(*CP*CP*AP*AP*AP*GP*(ORP)P*AP*CP*CP*GP*GP*G)-3', 5'-D(*CP*CP*CP*GP*GP*TP*GP*CP*TP*TP*TP*GP*G)-3'
Authors:Chen, J, Dupradeau, F.Y, Case, D.A, Turner, C.J, Stubbe, J.
Deposit date:2006-12-11
Release date:2007-11-27
Last modified:2023-11-29
Method:SOLUTION NMR
Cite:DNA oligonucleotides with A, T, G or C opposite an abasic site: structure and dynamics.
Nucleic Acids Res., 36, 2008
2LEF
DownloadVisualize
BU of 2lef by Molmil
LEF1 HMG DOMAIN (FROM MOUSE), COMPLEXED WITH DNA (15BP), NMR, 12 STRUCTURES
Descriptor: DNA (5'-D(*CP*AP*CP*CP*CP*TP*TP*TP*GP*AP*AP*GP*CP*TP*C)-3'), DNA (5'-D(*GP*AP*GP*CP*TP*TP*CP*AP*AP*AP*GP*GP*GP*TP*G)-3'), PROTEIN (LYMPHOID ENHANCER-BINDING FACTOR)
Authors:Li, X, Love, J.J, Case, D.A, Wright, P.E.
Deposit date:1998-10-13
Release date:1998-10-21
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structural basis for DNA bending by the architectural transcription factor LEF-1.
Nature, 376, 1995
2KBU
DownloadVisualize
BU of 2kbu by Molmil
NMR solution structure of Pin1 WW domain mutant with beta turn mimic at position 12
Descriptor: Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
Authors:Fuller, A.A, Bhabha, G, Case, D.A.
Deposit date:2008-12-08
Release date:2009-07-07
Last modified:2024-07-10
Method:SOLUTION NMR
Cite:Evaluating beta-turn mimics as beta-sheet folding nucleators.
Proc.Natl.Acad.Sci.USA, 106, 2009
2NC5
DownloadVisualize
BU of 2nc5 by Molmil
Solution Structure of N-Xylosylated Pin1 WW Domain
Descriptor: Pin1 WW Domain, beta-D-xylopyranose
Authors:Hsu, C, Park, S, Mortenson, D.E, Foley, B, Wang, X, Woods, R.J, Case, D.A, Powers, E.T, Wong, C, Dyson, H, Kelly, J.W.
Deposit date:2016-03-20
Release date:2016-06-08
Last modified:2020-07-29
Method:SOLUTION NMR
Cite:The Dependence of Carbohydrate-Aromatic Interaction Strengths on the Structure of the Carbohydrate.
J.Am.Chem.Soc., 138, 2016
2NC3
DownloadVisualize
BU of 2nc3 by Molmil
Solution Structure of N-Allosylated Pin1 WW Domain
Descriptor: Pin1 WW Domain, beta-D-allopyranose
Authors:Hsu, C, Park, S, Mortenson, D.E, Foley, B, Wang, X, Woods, R.J, Case, D.A, Powers, E.T, Wong, C, Dyson, H, Kelly, J.W.
Deposit date:2016-03-20
Release date:2016-06-08
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The Dependence of Carbohydrate-Aromatic Interaction Strengths on the Structure of the Carbohydrate.
J.Am.Chem.Soc., 138, 2016
2NC4
DownloadVisualize
BU of 2nc4 by Molmil
Solution Structure of N-Galactosylated Pin1 WW Domain
Descriptor: Pin1 WW Domain, beta-D-galactopyranose
Authors:Hsu, C, Park, S, Mortenson, D.E, Foley, B, Wang, X, Woods, R.J, Case, D.A, Powers, E.T, Wong, C, Dyson, H, Kelly, J.W.
Deposit date:2016-03-20
Release date:2016-06-08
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The Dependence of Carbohydrate-Aromatic Interaction Strengths on the Structure of the Carbohydrate.
J.Am.Chem.Soc., 138, 2016
2NC6
DownloadVisualize
BU of 2nc6 by Molmil
Solution Structure of N-L-idosylated Pin1 WW Domain
Descriptor: Pin1 WW Domain, beta-L-idopyranose
Authors:Hsu, C, Park, S, Mortenson, D.E, Foley, B, Wang, X, Woods, R.J, Case, D.A, Powers, E.T, Wong, C, Dyson, H, Kelly, J.W.
Deposit date:2016-03-20
Release date:2016-06-08
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The Dependence of Carbohydrate-Aromatic Interaction Strengths on the Structure of the Carbohydrate.
J.Am.Chem.Soc., 138, 2016
6VVJ
DownloadVisualize
BU of 6vvj by Molmil
Cap1G-TPUA
Descriptor: RNA (130-MER)
Authors:Summers, M.F, Brown, J.D.
Deposit date:2020-02-18
Release date:2020-04-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural basis for transcriptional start site control of HIV-1 RNA fate.
Science, 368, 2020
6VU1
DownloadVisualize
BU of 6vu1 by Molmil
Cap3G-TAR-F1 is an RNA hairpin. The 1H-1H NOESY data was collected at 308 K in 10 mM KH2PO4 pH 7.4.
Descriptor: RNA (34-MER)
Authors:Summers, M.F, Brown, J.D.
Deposit date:2020-02-14
Release date:2020-04-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural basis for transcriptional start site control of HIV-1 RNA fate.
Science, 368, 2020
6WXI
DownloadVisualize
BU of 6wxi by Molmil
Colicin E1 fragment in nanodisc-embedded TolC
Descriptor: Outer membrane protein TolC
Authors:Kaelber, J.T, Budiardjo, S.J, Firlar, E, Ikujuni, A.P, Slusky, J.S.G.
Deposit date:2020-05-10
Release date:2021-05-12
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (2.84 Å)
Cite:Colicin E1 opens its hinge to plug TolC.
Elife, 11, 2022
8DYZ
DownloadVisualize
BU of 8dyz by Molmil
Hen lysozyme in tetragonal space group at ambient temperature - diffuse scattering dataset
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Meisburger, S.P, Ando, N.
Deposit date:2022-08-05
Release date:2022-09-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.272 Å)
Cite:Robust total X-ray scattering workflow to study correlated motion of proteins in crystals.
Nat Commun, 14, 2023
8DZ7
DownloadVisualize
BU of 8dz7 by Molmil
Hen lysozyme in orthorhombic space group at ambient temperature - diffuse scattering dataset
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Meisburger, S.P, Imran, S.M.S, Ando, N.
Deposit date:2022-08-06
Release date:2022-09-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Robust total X-ray scattering workflow to study correlated motion of proteins in crystals.
Nat Commun, 14, 2023
6O2H
DownloadVisualize
BU of 6o2h by Molmil
Hen lysozyme in triclinic space group at ambient temperature - diffuse scattering dataset
Descriptor: CHLORIDE ION, Lysozyme C, NITRATE ION
Authors:Meisburger, S.P, Ando, N.
Deposit date:2019-02-22
Release date:2020-02-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.212 Å)
Cite:Diffuse X-ray scattering from correlated motions in a protein crystal.
Nat Commun, 11, 2020
6BG9
DownloadVisualize
BU of 6bg9 by Molmil
HYBRID NMR/CRYO-EM STRUCTURE OF THE HIV-1 RNA DIMERIZATION SIGNAL
Descriptor: RNA dimerization signal
Authors:Summers, M.F.
Deposit date:2017-10-27
Release date:2018-02-21
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (9 Å), SOLUTION NMR
Cite:Structure of the 30 kDa HIV-1 RNA Dimerization Signal by a Hybrid Cryo-EM, NMR, and Molecular Dynamics Approach.
Structure, 26, 2018
2CNP
DownloadVisualize
BU of 2cnp by Molmil
HIGH RESOLUTION SOLUTION STRUCTURE OF APO RABBIT CALCYCLIN, NMR, 22 STRUCTURES
Descriptor: CALCYCLIN
Authors:Maler, L, Potts, B.C.M, Chazin, W.J.
Deposit date:1999-01-07
Release date:1999-07-22
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:High resolution solution structure of apo calcyclin and structural variations in the S100 family of calcium-binding proteins.
J.Biomol.NMR, 13, 1999
2HGH
DownloadVisualize
BU of 2hgh by Molmil
Transcription Factor IIIA zinc fingers 4-6 bound to 5S rRNA 55mer (NMR structure)
Descriptor: 55-MER, Transcription factor IIIA, ZINC ION
Authors:Lee, B.M.
Deposit date:2006-06-27
Release date:2006-08-01
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Induced Fit and 'Lock and Key' Recognition of 5 S RNA by Zinc Fingers of Transcription Factor IIIA
J.Mol.Biol., 357, 2006
1HBB
DownloadVisualize
BU of 1hbb by Molmil
HIGH-RESOLUTION X-RAY STUDY OF DEOXYHEMOGLOBIN ROTHSCHILD 37BETA TRP-> ARG: A MUTATION THAT CREATES AN INTERSUBUNIT CHLORIDE-BINDING SITE
Descriptor: HEMOGLOBIN A (DEOXY) (ALPHA CHAIN), HEMOGLOBIN A (DEOXY) (BETA CHAIN), PROTOPORPHYRIN IX CONTAINING FE
Authors:Kavanaugh, J.S, Arnone, A.
Deposit date:1992-01-07
Release date:1994-01-31
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:High-resolution X-ray study of deoxyhemoglobin Rothschild 37 beta Trp----Arg: a mutation that creates an intersubunit chloride-binding site.
Biochemistry, 31, 1992
1HBA
DownloadVisualize
BU of 1hba by Molmil
HIGH-RESOLUTION X-RAY STUDY OF DEOXYHEMOGLOBIN ROTHSCHILD 37BETA TRP-> ARG: A MUTATION THAT CREATES AN INTERSUBUNIT CHLORIDE-BINDING SITE
Descriptor: CHLORIDE ION, HEMOGLOBIN ROTHSCHILD (DEOXY) (ALPHA CHAIN), HEMOGLOBIN ROTHSCHILD (DEOXY) (BETA CHAIN), ...
Authors:Kavanaugh, J.S, Arnone, A.
Deposit date:1992-01-07
Release date:1994-01-31
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:High-resolution X-ray study of deoxyhemoglobin Rothschild 37 beta Trp----Arg: a mutation that creates an intersubunit chloride-binding site.
Biochemistry, 31, 1992
1A03
DownloadVisualize
BU of 1a03 by Molmil
THE THREE-DIMENSIONAL STRUCTURE OF CA2+-BOUND CALCYCLIN: IMPLICATIONS FOR CA2+-SIGNAL TRANSDUCTION BY S100 PROTEINS, NMR, 20 STRUCTURES
Descriptor: CALCYCLIN (RABBIT, CA2+)
Authors:Sastry, M, Ketchem, R.R, Crescenzi, O, Weber, C, Lubienski, M.J, Hidaka, H, Chazin, W.J.
Deposit date:1997-12-08
Release date:1999-03-02
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The three-dimensional structure of Ca(2+)-bound calcyclin: implications for Ca(2+)-signal transduction by S100 proteins.
Structure, 6, 1998
1CUR
DownloadVisualize
BU of 1cur by Molmil
REDUCED RUSTICYANIN, NMR
Descriptor: COPPER (II) ION, CU(I) RUSTICYANIN
Authors:Botuyan, M.V, Dyson, H.J.
Deposit date:1996-04-19
Release date:1996-11-08
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:NMR solution structure of Cu(I) rusticyanin from Thiobacillus ferrooxidans: structural basis for the extreme acid stability and redox potential.
J.Mol.Biol., 263, 1996
2RB2
DownloadVisualize
BU of 2rb2 by Molmil
3-methylbenzylazide in complex with T4 lysozyme L99A
Descriptor: 1-(azidomethyl)-3-methylbenzene, Lysozyme, PHOSPHATE ION
Authors:Graves, A.P, Boyce, S.E, Shoichet, B.K.
Deposit date:2007-09-17
Release date:2008-03-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.463 Å)
Cite:Rescoring docking hit lists for model cavity sites: predictions and experimental testing.
J.Mol.Biol., 377, 2008
2RBV
DownloadVisualize
BU of 2rbv by Molmil
Cytochrome C Peroxidase in complex with (1-methyl-1h-pyrrol-2-yl)-methylamine
Descriptor: 1-(1-methyl-1H-pyrrol-2-yl)methanamine, Cytochrome C Peroxidase, PHOSPHATE ION, ...
Authors:Graves, A.P, Boyce, S.E, Shoichet, B.K.
Deposit date:2007-09-19
Release date:2008-03-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Rescoring docking hit lists for model cavity sites: predictions and experimental testing.
J.Mol.Biol., 377, 2008
2RBO
DownloadVisualize
BU of 2rbo by Molmil
2-nitrothiophene in complex with T4 lysozyme L99A/M102Q
Descriptor: 2-nitrothiophene, Lysozyme, PHOSPHATE ION
Authors:Graves, A.P, Boyce, S.E, Shoichet, B.K.
Deposit date:2007-09-19
Release date:2008-03-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Rescoring docking hit lists for model cavity sites: predictions and experimental testing.
J.Mol.Biol., 377, 2008

222926

건을2024-07-24부터공개중

PDB statisticsPDBj update infoContact PDBjnumon