Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6DXJ
DownloadVisualize
BU of 6dxj by Molmil
Crystal structure of double-stranded DNA GAGGCCTC; crystals grown in Zn2+
Descriptor: DNA (5'-D(*GP*AP*GP*GP*CP*CP*TP*C)-3'), ZINC ION
Authors:Hou, C, Tsodikov, O.V.
Deposit date:2018-06-29
Release date:2019-01-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Utilizing guanine coordinated Zn2+ to determine DNA crystal structures by single-wavelength anomalous diffraction
Acta Crystallogr.,Sect.D, 75, 2019
6DY5
DownloadVisualize
BU of 6dy5 by Molmil
Crystal structure of double-stranded DNA AGGGATCCCT in complex with Zn2+
Descriptor: DNA (5'-D(*AP*GP*GP*GP*AP*TP*CP*CP*CP*T)-3'), SPERMIDINE, ZINC ION
Authors:Hou, C, Tsodikov, O.V.
Deposit date:2018-07-01
Release date:2019-01-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Utilizing guanine coordinated Zn2+ to determine DNA crystal structures by single-wavelength anomalous diffraction
Acta Crystallogr.,Sect.D, 75, 2019
6DY9
DownloadVisualize
BU of 6dy9 by Molmil
Crystal structure of double-stranded DNA GGGATCCC; crystals grown in Zn2+
Descriptor: DNA (5'-D(*GP*GP*GP*AP*TP*CP*CP*C)-3'), ZINC ION
Authors:Hou, C, Tsodikov, O.V.
Deposit date:2018-07-01
Release date:2019-01-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Utilizing guanine coordinated Zn2+ to determine DNA crystal structures by single-wavelength anomalous diffraction
Acta Crystallogr.,Sect.D, 75, 2019
7JSA
DownloadVisualize
BU of 7jsa by Molmil
Crystal structure of the DNA binding domain of human transcription factor ERF in the reduced form, in complex with double-stranded DNA ACCGGAAGTG
Descriptor: DNA (5'-D(*AP*CP*CP*GP*GP*AP*AP*GP*TP*G)-3'), DNA (5'-D(*CP*AP*CP*TP*TP*CP*CP*GP*GP*T)-3'), ETS domain-containing transcription factor ERF
Authors:Hou, C, Tsodikov, O.V.
Deposit date:2020-08-14
Release date:2020-11-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structural Insight into the DNA Binding Function of Transcription Factor ERF.
Biochemistry, 2020
7JSL
DownloadVisualize
BU of 7jsl by Molmil
Crystal structure of the DNA binding domain of human transcription factor ERF in the oxidized form, in complex with double-stranded DNA ACCGGAAGTG
Descriptor: DNA (5'-D(*AP*CP*CP*GP*GP*AP*AP*GP*TP*G)-3'), DNA (5'-D(*CP*AP*CP*TP*TP*CP*CP*GP*GP*T)-3'), ETS domain-containing transcription factor ERF
Authors:Hou, C, Tsodikov, O.V.
Deposit date:2020-08-14
Release date:2020-11-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (4.51 Å)
Cite:Structural Insight into the DNA Binding Function of Transcription Factor ERF.
Biochemistry, 2020
7V0B
DownloadVisualize
BU of 7v0b by Molmil
Crystal structure of halogenase CtcP from Kitasatospora aureofaciens in complex with FAD
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Hou, C, Tsodikov, O.V.
Deposit date:2022-05-10
Release date:2023-05-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structures and complex formation of halogenase CtcP and FAD reductase CtcQ from the chlortetracycline biosynthetic pathway
To Be Published
7V0D
DownloadVisualize
BU of 7v0d by Molmil
Crystal structure of halogenase CtcP from Kitasatospora aureofaciens
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Hou, C, Tsodikov, O.V.
Deposit date:2022-05-10
Release date:2023-05-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structures and complex formation of halogenase CtcP and FAD reductase CtcQ from the chlortetracycline biosynthetic pathway
To Be Published
4I9G
DownloadVisualize
BU of 4i9g by Molmil
Crystal structure of glycerol phosphate phosphatase Rv1692 from Mycobacterium tuberculosis in complex with magnesium
Descriptor: Glycerol 3-phosphate phosphatase, MAGNESIUM ION
Authors:Biswas, T, Larrouy-Maumus, G, de Carvalho, L.P, Tsodikov, O.V.
Deposit date:2012-12-05
Release date:2013-07-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Discovery of a glycerol 3-phosphate phosphatase reveals glycerophospholipid polar head recycling in Mycobacterium tuberculosis.
Proc.Natl.Acad.Sci.USA, 110, 2013
4I9F
DownloadVisualize
BU of 4i9f by Molmil
Crystal structure of glycerol phosphate phosphatase Rv1692 from Mycobacterium tuberculosis in complex with calcium
Descriptor: CALCIUM ION, CHLORIDE ION, Glycerol 3-phosphate phosphatase
Authors:Biswas, T, Larrouy-Maumus, G, de Carvalho, L.P, Tsodikov, O.V.
Deposit date:2012-12-05
Release date:2013-07-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Discovery of a glycerol 3-phosphate phosphatase reveals glycerophospholipid polar head recycling in Mycobacterium tuberculosis.
Proc.Natl.Acad.Sci.USA, 110, 2013
4IJJ
DownloadVisualize
BU of 4ijj by Molmil
Structure of transcription factor DksA2 from Pseudomonas aeruginosa
Descriptor: Putative C4-type zinc finger protein, DksA/TraR family, SULFATE ION
Authors:Biswas, T, Furman, R, Artsimovitch, I, Tsodikov, O.V.
Deposit date:2012-12-21
Release date:2013-02-27
Last modified:2013-03-27
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:DksA2, a zinc-independent structural analog of the transcription factor DksA.
Febs Lett., 587, 2013
9BDV
DownloadVisualize
BU of 9bdv by Molmil
NF-kappaB RelA homo-dimer bound to TA-centric kappaB DNA
Descriptor: DNA (5'-D(*AP*TP*CP*AP*CP*TP*GP*GP*AP*AP*AP*TP*TP*CP*CP*CP*AP*GP*T)-3'), DNA (5'-D(P*AP*CP*TP*GP*GP*GP*AP*AP*TP*TP*TP*CP*CP*AP*GP*TP*GP*AP*T)-3'), SULFATE ION, ...
Authors:Biswas, T, Shahabi, S, Tsodikov, O.V.
Deposit date:2024-04-12
Release date:2024-04-24
Last modified:2024-06-12
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Transient interactions modulate the affinity of NF-kappa B transcription factors for DNA.
Proc.Natl.Acad.Sci.USA, 121, 2024
9BDW
DownloadVisualize
BU of 9bdw by Molmil
NF-kappaB RelA homo-dimer bound to GC-centric kappaB DNA
Descriptor: DNA (5'-D(P*AP*CP*TP*GP*GP*GP*AP*AP*GP*TP*TP*CP*CP*AP*GP*TP*GP*AP*T)-3'), DNA (5'-D(P*AP*TP*CP*AP*CP*TP*GP*GP*AP*AP*CP*TP*TP*CP*CP*CP*AP*GP*T)-3'), SULFATE ION, ...
Authors:Biswas, T, Shahabi, S, Tsodikov, O.V, Huang, D, Ghosh, G.
Deposit date:2024-04-12
Release date:2024-04-24
Last modified:2024-06-12
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Transient interactions modulate the affinity of NF-kappa B transcription factors for DNA.
Proc.Natl.Acad.Sci.USA, 121, 2024
9BDX
DownloadVisualize
BU of 9bdx by Molmil
NF-kappaB RelA homo-dimer bound to CG-centric kappaB DNA
Descriptor: DNA (5'-D(*AP*TP*CP*AP*CP*TP*GP*GP*AP*AP*GP*TP*TP*CP*CP*CP*AP*GP*T)-3'), DNA (5'-D(P*AP*CP*TP*GP*GP*GP*AP*AP*CP*TP*TP*CP*CP*AP*GP*TP*GP*AP*T)-3'), Transcription factor p65
Authors:Biswas, T, Shahabi, S, Tsodikov, O.V, Ghosh, G.
Deposit date:2024-04-12
Release date:2024-04-24
Last modified:2024-06-12
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Transient interactions modulate the affinity of NF-kappa B transcription factors for DNA.
Proc.Natl.Acad.Sci.USA, 121, 2024
3R1K
DownloadVisualize
BU of 3r1k by Molmil
Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis H37Rv in complex with CoA and an acetamide moiety
Descriptor: ACETAMIDE, COENZYME A, Enhanced intracellular survival protein
Authors:Biswas, T, Chen, W, Garneau-Tsodikova, S, Tsodikov, O.V.
Deposit date:2011-03-10
Release date:2011-06-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Unusual regioversatility of acetyltransferase Eis, a cause of drug resistance in XDR-TB.
Proc.Natl.Acad.Sci.USA, 108, 2011
3ITW
DownloadVisualize
BU of 3itw by Molmil
Crystal structure of TioX from Micromonospora sp. ML1
Descriptor: Protein tioX
Authors:Biswas, T, Garneau-Tsodikova, S, Tsodikov, O.V.
Deposit date:2009-08-28
Release date:2010-02-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:A New Scaffold of an Old Protein Fold Ensures Binding to the Bisintercalator Thiocoraline.
J.Mol.Biol., 397, 2010
3K6Z
DownloadVisualize
BU of 3k6z by Molmil
Crystal structure of Rv3671c protease, inactive form
Descriptor: POSSIBLE MEMBRANE-ASSOCIATED SERINE PROTEASE
Authors:Biswas, T, Small, J, Vandal, O, Ehrt, S, Tsodikov, O.V.
Deposit date:2009-10-10
Release date:2010-10-13
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural insight into serine protease Rv3671c that Protects M. tuberculosis from oxidative and acidic stress.
Structure, 18, 2010
3I6B
DownloadVisualize
BU of 3i6b by Molmil
Crystal structure of YrbI lacking the last 8 residues, in complex with Kdo and inorganic phosphate
Descriptor: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid, MAGNESIUM ION, ...
Authors:Biswas, T, Tsodikov, O.V.
Deposit date:2009-07-06
Release date:2009-09-01
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:The Tail of KdsC: CONFORMATIONAL CHANGES CONTROL THE ACTIVITY OF A HALOACID DEHALOGENASE SUPERFAMILY PHOSPHATASE.
J.Biol.Chem., 284, 2009
3K6Y
DownloadVisualize
BU of 3k6y by Molmil
Crystal structure of Rv3671c protease from M. tuberculosis, active form
Descriptor: POSSIBLE MEMBRANE-ASSOCIATED SERINE PROTEASE
Authors:Biswas, T, Small, J, Vandal, O, Ehrt, S, Tsodikov, O.V.
Deposit date:2009-10-10
Release date:2010-10-13
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural insight into serine protease Rv3671c that Protects M. tuberculosis from oxidative and acidic stress.
Structure, 18, 2010
4RPA
DownloadVisualize
BU of 4rpa by Molmil
Crystal structure of inorganic pyrophosphatase from Staphylococcus aureus in complex with Mn2+
Descriptor: MANGANESE (II) ION, Probable manganese-dependent inorganic pyrophosphatase
Authors:Gajadeera, C.S, Tsodikov, O.V.
Deposit date:2014-10-30
Release date:2015-01-21
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of inorganic pyrophosphatase from Staphylococcus aureus reveals conformational flexibility of the active site.
J.Struct.Biol., 189, 2015
4RV9
DownloadVisualize
BU of 4rv9 by Molmil
Crystal structure of MtmC in complex with SAH
Descriptor: ACETATE ION, CHLORIDE ION, D-mycarose 3-C-methyltransferase, ...
Authors:Hou, C, Chen, J.-M, Rohr, J, Tsodikov, O.V.
Deposit date:2014-11-25
Release date:2015-02-04
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Insight into MtmC, a Bifunctional Ketoreductase-Methyltransferase Involved in the Assembly of the Mithramycin Trisaccharide Chain.
Biochemistry, 54, 2015
5E8G
DownloadVisualize
BU of 5e8g by Molmil
Crystal structure of the DNA binding domain of human transcription factor FLI1
Descriptor: COBALT (II) ION, Friend leukemia integration 1 transcription factor
Authors:Hou, C, Tsodikov, O.V.
Deposit date:2015-10-14
Release date:2015-12-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural Basis for Dimerization and DNA Binding of Transcription Factor FLI1.
Biochemistry, 54, 2015
5EBV
DownloadVisualize
BU of 5ebv by Molmil
Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis in complex with inhibitor 11c and CoA
Descriptor: 5-(4-chlorophenyl)-~{N}-[3-(3,4-dihydro-1~{H}-isoquinolin-2-yl)propyl]-4-methyl-1,1-bis(oxidanylidene)-1,2-thiazol-3-amine, CHLORIDE ION, COENZYME A, ...
Authors:Gajadeera, C.S, Hou, C, Garneau-Tsodikova, S, Tsodikov, O.V.
Deposit date:2015-10-19
Release date:2016-03-30
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Potent Inhibitors of Acetyltransferase Eis Overcome Kanamycin Resistance in Mycobacterium tuberculosis.
Acs Chem.Biol., 11, 2016
5EC4
DownloadVisualize
BU of 5ec4 by Molmil
Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis in complex with inhibitor 13g and CoA
Descriptor: 5-(3-chlorophenyl)-4-methyl-~{N}-(3-morpholin-4-ylpropyl)-1,1-bis(oxidanylidene)-1,2-thiazol-3-amine, COENZYME A, Enhanced intracellular survival protein
Authors:Gajadeera, C.S, Hou, C, Garneau-Tsodikova, S, Tsodikov, O.V.
Deposit date:2015-10-20
Release date:2016-03-30
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Potent Inhibitors of Acetyltransferase Eis Overcome Kanamycin Resistance in Mycobacterium tuberculosis.
Acs Chem.Biol., 11, 2016
5DBJ
DownloadVisualize
BU of 5dbj by Molmil
Crystal structure of halogenase PltA
Descriptor: CHLORIDE ION, FADH2-dependent halogenase PltA, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Pang, A.H, Tsodikov, O.V.
Deposit date:2015-08-21
Release date:2015-10-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal structure of halogenase PltA from the pyoluteorin biosynthetic pathway.
J.Struct.Biol., 192, 2015
5E8I
DownloadVisualize
BU of 5e8i by Molmil
Crystal structure of the DNA binding domain of human transcription factor FLI1 in complex with a 10-mer DNA ACCGGAAGTG
Descriptor: CALCIUM ION, DNA (5'-D(*AP*CP*CP*GP*GP*AP*AP*GP*TP*G)-3'), DNA (5'-D(*CP*AP*CP*TP*TP*CP*CP*GP*GP*T)-3'), ...
Authors:Hou, C, Tsodikov, O.V.
Deposit date:2015-10-14
Release date:2015-12-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Structural Basis for Dimerization and DNA Binding of Transcription Factor FLI1.
Biochemistry, 54, 2015

221051

건을2024-06-12부터공개중

PDB statisticsPDBj update infoContact PDBjnumon