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5WT9
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BU of 5wt9 by Molmil
Complex structure of PD-1 and nivolumab-Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy Chain of Nivolumab, Light Chain of Nivolumab, ...
著者Tan, S, Zhang, H, Chai, Y, Song, H, Tong, Z, Wang, Q, Qi, J, Wong, G, Zhu, X, Liu, W.J, Gao, S, Wang, Z, Shi, Y, Yang, F, Gao, G.F, Yan, J.
登録日2016-12-10
公開日2017-02-15
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.401 Å)
主引用文献An unexpected N-terminal loop in PD-1 dominates binding by nivolumab.
Nat Commun, 8, 2017
2AW9
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Superoxide dismutase with manganese from Deinococcus radiodurans
分子名称: MANGANESE (II) ION, Superoxide dismutase [Mn]
著者Tanaka, S, Sawaya, M.R, Chan, S, Perry, L.J.
登録日2005-08-31
公開日2006-08-22
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of manganese superoxide dismutase from Deinococcus radiodurans
To be Published
3BN4
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BU of 3bn4 by Molmil
Carboxysome Subunit, CcmK1
分子名称: Carbon dioxide-concentrating mechanism protein ccmK homolog 1, SULFATE ION
著者Tanaka, S, Sawaya, M.R, Yeates, T.O.
登録日2007-12-13
公開日2008-03-04
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Atomic-level models of the bacterial carboxysome shell.
Science, 319, 2008
6UMV
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BU of 6umv by Molmil
Human apo PD-1 double mutant
分子名称: CHLORIDE ION, Programmed cell death protein 1
著者Tang, S, Kim, P.S.
登録日2019-10-10
公開日2019-11-27
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.424 Å)
主引用文献A high-affinity human PD-1/PD-L2 complex informs avenues for small-molecule immune checkpoint drug discovery.
Proc.Natl.Acad.Sci.USA, 116, 2019
5WRJ
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BU of 5wrj by Molmil
Crystal structure of human tyrosylprotein sulfotransferase-1 complexed with PAP and gastrin peptide
分子名称: ADENOSINE-3'-5'-DIPHOSPHATE, MAGNESIUM ION, Protein-tyrosine sulfotransferase 1, ...
著者Tanaka, S, Nishiyori, T, Kojo, H, Otsubo, R, Kakuta, Y.
登録日2016-12-02
公開日2017-09-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Structural basis for the broad substrate specificity of the human tyrosylprotein sulfotransferase-1.
Sci Rep, 7, 2017
5WRI
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Crystal structure of human tyrosylprotein sulfotransferase-1 complexed with PAP and C4 peptide
分子名称: ADENOSINE-3'-5'-DIPHOSPHATE, ASP-PHE-GLU-ASP-TYR-GLU-PHE-ASP, GLYCEROL, ...
著者Tanaka, S, Nishiyori, T, Kojo, H, Otsubo, R, Kakuta, Y.
登録日2016-12-02
公開日2017-09-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural basis for the broad substrate specificity of the human tyrosylprotein sulfotransferase-1.
Sci Rep, 7, 2017
1MNM
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BU of 1mnm by Molmil
YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE
分子名称: DNA (STE6 OPERATOR DNA), PROTEIN (MAT ALPHA-2 TRANSCRIPTIONAL REPRESSOR), PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
著者Tan, S, Richmond, T.J.
登録日1997-11-03
公開日1998-03-18
最終更新日2023-08-02
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Crystal structure of the yeast MATalpha2/MCM1/DNA ternary complex.
Nature, 391, 1998
1YTF
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YEAST TFIIA/TBP/DNA COMPLEX
分子名称: DNA (5'-D(*GP*TP*TP*TP*TP*AP*TP*AP*TP*AP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*AP*TP*GP*TP*AP*TP*AP*TP*AP*AP*AP*AP*C)-3'), PROTEIN (TATA BINDING PROTEIN (TBP)), ...
著者Tan, S, Hunziker, Y, Sargent, D.F, Richmond, T.J.
登録日1996-04-05
公開日1996-06-20
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of a yeast TFIIA/TBP/DNA complex.
Nature, 381, 1996
5XJ4
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BU of 5xj4 by Molmil
Complex structure of durvalumab-scFv/PD-L1
分子名称: Programmed cell death 1 ligand 1, durvalumab-VH, durvalumab-VL
著者Tan, S, Liu, K, Chai, Y, Gao, G.F, Qi, J.
登録日2017-04-29
公開日2018-04-25
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Distinct PD-L1 binding characteristics of therapeutic monoclonal antibody durvalumab
Protein Cell, 9, 2018
7S0B
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BU of 7s0b by Molmil
Structure of the SARS-CoV-2 RBD in complex with neutralizing antibody N-612-056
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, N-612-056 Fab Heavy Chain, N-612-056 Light Chain, ...
著者Tanaka, S, Barnes, C.O, Bjorkman, P.J.
登録日2021-08-30
公開日2021-10-06
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Rapid identification of neutralizing antibodies against SARS-CoV-2 variants by mRNA display.
Cell Rep, 38, 2022
3MN8
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Structure of Drosophila melanogaster carboxypeptidase D isoform 1B short
分子名称: (2-GUANIDINOETHYLMERCAPTO)SUCCINIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ...
著者Tanco, S, Arolas, J.L, Guevara, T, Lorenzo, J, Aviles, F.X, Gomis-Ruth, F.X.
登録日2010-04-21
公開日2010-07-28
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure-Function Analysis of the Short Splicing Variant Carboxypeptidase Encoded by Drosophila melanogaster silver.
J.Mol.Biol., 401, 2010
6UMT
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BU of 6umt by Molmil
High-affinity human PD-1 PD-L2 complex
分子名称: MAGNESIUM ION, Programmed cell death 1 ligand 2, Programmed cell death protein 1
著者Tang, S, Kim, P.S.
登録日2019-10-10
公開日2019-11-27
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.986 Å)
主引用文献A high-affinity human PD-1/PD-L2 complex informs avenues for small-molecule immune checkpoint drug discovery.
Proc.Natl.Acad.Sci.USA, 116, 2019
6UMU
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BU of 6umu by Molmil
Human apo PD-1 triple mutant
分子名称: CHLORIDE ION, Programmed cell death protein 1
著者Tang, S, Kim, P.S.
登録日2019-10-10
公開日2019-11-27
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.183 Å)
主引用文献A high-affinity human PD-1/PD-L2 complex informs avenues for small-molecule immune checkpoint drug discovery.
Proc.Natl.Acad.Sci.USA, 116, 2019
7OT4
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BU of 7ot4 by Molmil
Crystal structure of MsrA variant C198C206 from Escherichia coli, oxidized
分子名称: POTASSIUM ION, Peptide methionine sulfoxide reductase MsrA
著者Napolitano, S, Glockshuber, R.
登録日2021-06-09
公開日2022-06-22
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.19 Å)
主引用文献Exploring the unique mechanism of methionine sulphoxide reduction by Escherichia coli
To Be Published
8JP6
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BU of 8jp6 by Molmil
Cryo-EM structures of the head region of full-length ERGIC-53 with MCFD2 (Substate A)
分子名称: CALCIUM ION, Multiple coagulation factor deficiency protein 2, Protein ERGIC-53, ...
著者Watanabe, S, Inaba, K.
登録日2023-06-10
公開日2024-04-17
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (3.29 Å)
主引用文献Structure of full-length ERGIC-53 in complex with MCFD2 for cargo transport.
Nat Commun, 15, 2024
8JPG
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BU of 8jpg by Molmil
Cryo-EM structure of full-length ERGIC-53 with MCFD2
分子名称: CALCIUM ION, Multiple coagulation factor deficiency protein 2, Protein ERGIC-53, ...
著者Watanabe, S, Inaba, K.
登録日2023-06-12
公開日2024-04-17
最終更新日2024-10-30
実験手法ELECTRON MICROSCOPY (6.76 Å)
主引用文献Structure of full-length ERGIC-53 in complex with MCFD2 for cargo transport.
Nat Commun, 15, 2024
8JP7
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Cryo-EM structure of the head region of full-length ERGIC-53 with MCFD2 (Substate B)
分子名称: CALCIUM ION, Multiple coagulation factor deficiency protein 2, Protein ERGIC-53, ...
著者Watanabe, S, Inaba, K.
登録日2023-06-10
公開日2024-04-17
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (3.51 Å)
主引用文献Structure of full-length ERGIC-53 in complex with MCFD2 for cargo transport.
Nat Commun, 15, 2024
8JP8
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Cryo-EM structure of the head region of full-length ERGIC-53 with MCFD2 (Substate C)
分子名称: CALCIUM ION, Multiple coagulation factor deficiency protein 2, Protein ERGIC-53, ...
著者Watanabe, S, Inaba, K.
登録日2023-06-10
公開日2024-04-17
実験手法ELECTRON MICROSCOPY (3.39 Å)
主引用文献Structure of full-length ERGIC-53 in complex with MCFD2 for cargo transport.
Nat Commun, 15, 2024
8JP9
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Cryo-EM structure of the head region of full-length ERGIC-53 with MCFD2 (Substate D)
分子名称: CALCIUM ION, Multiple coagulation factor deficiency protein 2, Protein ERGIC-53, ...
著者Watanabe, S, Inaba, K.
登録日2023-06-10
公開日2024-04-17
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.37 Å)
主引用文献Structure of full-length ERGIC-53 in complex with MCFD2 for cargo transport.
Nat Commun, 15, 2024
8JP5
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BU of 8jp5 by Molmil
Cryo-EM structures of the head region of full-length ERGIC-53 with MCFD2 (form B)
分子名称: CALCIUM ION, Multiple coagulation factor deficiency protein 2, Protein ERGIC-53, ...
著者Watanabe, S, Inaba, K.
登録日2023-06-10
公開日2024-04-17
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (2.59 Å)
主引用文献Structure of full-length ERGIC-53 in complex with MCFD2 for cargo transport.
Nat Commun, 15, 2024
8JP4
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Cryo-EM structure of the head region of full-length ERGIC-53 with MCFD2 (form A)
分子名称: CALCIUM ION, Multiple coagulation factor deficiency protein 2, Protein ERGIC-53, ...
著者Watanabe, S, Inaba, K.
登録日2023-06-10
公開日2024-04-17
実験手法ELECTRON MICROSCOPY (2.53 Å)
主引用文献Structure of full-length ERGIC-53 in complex with MCFD2 for cargo transport.
Nat Commun, 15, 2024
3IA0
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Ethanolamine Utilization Microcompartment Shell Subunit, EutS-G39V mutant
分子名称: Ethanolamine utilization protein eutS
著者Tanaka, S, Sawaya, M.R, Yeates, T.O.
登録日2009-07-13
公開日2010-01-12
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure and Mechanisms of a Protein-Based Organelle in Escherichia coli.
Science, 327, 2010
3I96
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Ethanolamine Utilization Microcompartment Shell Subunit, EutS
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, CHLORIDE ION, Ethanolamine utilization protein eutS, ...
著者Tanaka, S, Sawaya, M.R, Yeates, T.O.
登録日2009-07-10
公開日2010-01-12
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structure and Mechanisms of a Protein-Based Organelle in Escherichia coli.
Science, 327, 2010
3I87
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Ethanolamine Utilization Microcompartment Shell Subunit, EutL Open Form
分子名称: CHLORIDE ION, Ethanolamine utilization protein eutL
著者Tanaka, S, Sawaya, M.R, Yeates, T.O.
登録日2009-07-09
公開日2010-01-12
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure and Mechanisms of a Protein-Based Organelle in Escherichia coli.
Science, 327, 2010
3I71
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Ethanolamine Utilization Microcompartment Shell Subunit, EutK C-terminal domain
分子名称: CITRATE ANION, Ethanolamine utilization protein eutK
著者Tanaka, S, Sawaya, M.R, Yeates, T.O.
登録日2009-07-07
公開日2010-01-12
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure and Mechanisms of a Protein-Based Organelle in Escherichia coli.
Science, 327, 2010

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