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3DNY
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BU of 3dny by Molmil
Fitting of the eEF2 crystal structure into the cryo-EM density map of the eEF2.80S.AlF4-.GDP complex
分子名称: Elongation factor 2
著者Sengupta, J, Frank, J.
登録日2008-07-03
公開日2008-08-05
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (12.6 Å)
主引用文献Visualization of the eEF2-80S ribosome transition-state complex by cryo-electron microscopy.
J.Mol.Biol., 382, 2008
1TRJ
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BU of 1trj by Molmil
Homology Model of Yeast RACK1 Protein fitted into 11.7A cryo-EM map of Yeast 80S Ribosome
分子名称: Guanine nucleotide-binding protein beta subunit-like protein, Helix 39 of 18S rRNA, Helix 40 of 18S rRNA
著者Sengupta, J, Nilsson, J, Gursky, R, Spahn, C.M, Nissen, P, Frank, J.
登録日2004-06-21
公開日2004-09-28
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (11.7 Å)
主引用文献Identification of the versatile scaffold protein RACK1 on the eukaryotic ribosome by cryo-EM
Nat.Struct.Mol.Biol., 11, 2004
9K0Z
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BU of 9k0z by Molmil
EF-G2 bound 70S ribosome complex of M. smegmatis
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 50S ribosomal protein L14, ...
著者Sengupta, J, Baid, P.
登録日2024-10-16
公開日2025-07-09
実験手法ELECTRON MICROSCOPY (4.7 Å)
主引用文献Cryo-EM structural analyses reveal a unique role for elongation factor G2 (EF-G2) in Mycobacteria.
Febs J., 2025
9K10
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BU of 9k10 by Molmil
EF-G2 bound 50S ribosome subunit complex of M. smegmatis
分子名称: 23S ribosomal RNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ...
著者Sengupta, J, Baid, P.
登録日2024-10-16
公開日2025-07-09
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Cryo-EM structural analyses reveal a unique role for elongation factor G2 (EF-G2) in Mycobacteria.
Febs J., 2025
7Y41
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BU of 7y41 by Molmil
Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth
分子名称: 23S ribosomal RNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ...
著者Sengupta, J, Baid, P.
登録日2022-06-13
公開日2023-05-03
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Cryo-EM captures a unique conformational rearrangement in 23S rRNA helices of the Mycobacterium 50S subunit.
Int.J.Biol.Macromol., 253, 2023
7XAM
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BU of 7xam by Molmil
Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth
分子名称: 23S rRNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ...
著者Sengupta, J, Baid, P.
登録日2022-03-18
公開日2023-05-03
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Cryo-EM captures a unique conformational rearrangement in 23S rRNA helices of the Mycobacterium 50S subunit.
Int.J.Biol.Macromol., 253, 2023
6IY7
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BU of 6iy7 by Molmil
E. coli peptide deformylase crystal structure fitted into the cryo-EM density map of E. coli 70S ribosome in complex with peptide deformylase
分子名称: Peptide deformylase
著者Sengupta, J, Akbar, S, Bhakta, S.
登録日2018-12-13
公開日2019-04-17
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (10.5 Å)
主引用文献Cryo-EM Structures Reveal Relocalization of MetAP in the Presence of Other Protein Biogenesis Factors at the Ribosomal Tunnel Exit.
J. Mol. Biol., 431, 2019
6J45
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BU of 6j45 by Molmil
Crystal structure of E. coli peptide deformylase enzyme and chaperone trigger factor fitted into the cryo-EM density map of the complex
分子名称: Peptide deformylase, Trigger factor
著者Sengupta, J, Bhakta, S, Akbar, S.
登録日2019-01-07
公開日2019-04-17
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (12.2 Å)
主引用文献Cryo-EM Structures Reveal Relocalization of MetAP in the Presence of Other Protein Biogenesis Factors at the Ribosomal Tunnel Exit.
J. Mol. Biol., 431, 2019
6IZ7
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BU of 6iz7 by Molmil
E. coli methionine aminopeptidase crystal structure fitted into the cryo-EM density map of E. coli 70S ribosome in complex with methionine aminopeptidase
分子名称: Methionine aminopeptidase
著者Sengupta, J, Bhakta, S, Akbar, S.
登録日2018-12-18
公開日2019-04-17
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (11.8 Å)
主引用文献Cryo-EM Structures Reveal Relocalization of MetAP in the Presence of Other Protein Biogenesis Factors at the Ribosomal Tunnel Exit.
J. Mol. Biol., 431, 2019
6J0A
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BU of 6j0a by Molmil
Crystal structure of E. coli methionine aminopeptidase enzyme and chaperone trigger factor fitted into the cryo-EM density map of the complex
分子名称: Methionine aminopeptidase, Trigger factor
著者Sengupta, J, Bhakta, S, Akbar, S.
登録日2018-12-22
公開日2019-04-17
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (14.2 Å)
主引用文献Cryo-EM Structures Reveal Relocalization of MetAP in the Presence of Other Protein Biogenesis Factors at the Ribosomal Tunnel Exit.
J. Mol. Biol., 431, 2019
6IZI
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BU of 6izi by Molmil
Crystal structure of E. coli peptide deformylase and methionine aminopeptidase fitted into the cryo-EM density map of the complex
分子名称: Methionine aminopeptidase, Peptide deformylase
著者Sengupta, J, Bhakta, S, Akbar, S.
登録日2018-12-19
公開日2019-04-17
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (11.8 Å)
主引用文献Cryo-EM Structures Reveal Relocalization of MetAP in the Presence of Other Protein Biogenesis Factors at the Ribosomal Tunnel Exit.
J. Mol. Biol., 431, 2019
6JR3
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BU of 6jr3 by Molmil
Crystal structure of insulin hexamer fitted into cryo EM density map where each dimer was kept as rigid body
分子名称: Insulin A chain, Insulin B chain
著者Sengupta, J, Pathak, B.K, Bhakta, S.
登録日2019-04-02
公開日2020-04-22
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (14.5 Å)
主引用文献Resveratrol as a nontoxic excipient stabilizes insulin in a bioactive hexameric form.
J.Comput.Aided Mol.Des., 34, 2020
4V69
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BU of 4v69 by Molmil
Ternary complex-bound E.coli 70S ribosome.
分子名称: 16S rRNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Villa, E, Sengupta, J, Trabuco, L.G, LeBarron, J, Baxter, W.T, Shaikh, T.R, Grassucci, R.A, Nissen, P, Ehrenberg, M, Schulten, K, Frank, J.
登録日2008-12-11
公開日2014-07-09
最終更新日2024-02-28
実験手法ELECTRON MICROSCOPY (6.7 Å)
主引用文献Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis
Proc.Natl.Acad.Sci.USA, 106, 2009
4V48
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BU of 4v48 by Molmil
Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome
分子名称: 16S RIBOSOMAL RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ...
著者Gao, H, Sengupta, J, Valle, M, Korostelev, A, Eswar, N, Stagg, S.M, Van Roey, P, Agrawal, R.K, Harvey, S.T, Sali, A, Chapman, M.S, Frank, J.
登録日2003-05-06
公開日2014-07-09
最終更新日2024-02-28
実験手法ELECTRON MICROSCOPY (11.5 Å)
主引用文献Study of the structural dynamics of the E. coli 70S ribosome using real space refinement
Cell(Cambridge,Mass.), 113, 2003
1ZN1
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BU of 1zn1 by Molmil
Coordinates of RRF fitted into Cryo-EM map of the 70S post-termination complex
分子名称: 30S ribosomal protein S12, Ribosome recycling factor, ribosomal 16S RNA, ...
著者Gao, N, Zavialov, A.V, Li, W, Sengupta, J, Valle, M, Gursky, R.P, Ehrenberg, M, Frank, J.
登録日2005-05-11
公開日2005-06-14
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (14.1 Å)
主引用文献Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.
Mol.Cell, 18, 2005
4V47
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BU of 4v47 by Molmil
Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome
分子名称: 16S RIBOSOMAL RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ...
著者Gao, H, Sengupta, J, Valle, M, Korostelev, A, Eswar, N, Stagg, S.M, Van Roey, P, Agrawal, R.K, Harvey, S.T, Sali, A, Chapman, M.S, Frank, J.
登録日2003-05-06
公開日2014-07-09
最終更新日2024-02-28
実験手法ELECTRON MICROSCOPY (12.3 Å)
主引用文献Study of the structural dynamics of the E. coli 70S ribosome using real space refinement
Cell(Cambridge,Mass.), 113, 2003
1ZN0
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BU of 1zn0 by Molmil
Coordinates of RRF and EF-G fitted into Cryo-EM map of the 50S subunit bound with both EF-G (GDPNP) and RRF
分子名称: 16S RIBOSOMAL RNA, ELONGATION FACTOR G, Ribosome recycling factor
著者Gao, N, Zavialov, A.V, Li, W, Sengupta, J, Valle, M, Gursky, R.P, Ehrenberg, M, Frank, J.
登録日2005-05-11
公開日2005-06-14
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (15.5 Å)
主引用文献Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.
Mol.Cell, 18, 2005
8KAB
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BU of 8kab by Molmil
Mycobacterium smegmatis 50S ribosomal subunit-HflX complex
分子名称: 23S rRNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ...
著者Srinivasan, K, Banerjee, A, Sengupta, J.
登録日2023-08-02
公開日2024-07-31
最終更新日2024-09-25
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Cryo-EM structures reveal the molecular mechanism of HflX-mediated erythromycin resistance in mycobacteria.
Structure, 32, 2024
8YP6
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BU of 8yp6 by Molmil
Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis
分子名称: 16S rRNA, 30S ribosomal protein S7, Methionine aminopeptidase, ...
著者Banerjee, A, Srinivasan, K, Sengupta, J.
登録日2024-03-15
公開日2025-03-19
実験手法ELECTRON MICROSCOPY (4.7 Å)
主引用文献Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis
To Be Published
8XZ3
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BU of 8xz3 by Molmil
Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin
分子名称: 23S rRNA, 50S ribosomal protein L14, 50S ribosomal protein L19, ...
著者Srinivasan, K, Banerjee, A, Sengupta, J.
登録日2024-01-20
公開日2024-07-31
最終更新日2024-09-25
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Cryo-EM structures reveal the molecular mechanism of HflX-mediated erythromycin resistance in mycobacteria.
Structure, 32, 2024
5XZC
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BU of 5xzc by Molmil
Cryo-EM structure of p300-p53 protein complex
分子名称: Cellular tumor antigen p53, Histone acetyltransferase p300
著者Ghosh, R, Roy, S, Sengupta, J.
登録日2017-07-12
公開日2019-01-23
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (10.7 Å)
主引用文献Tumor suppressor p53-mediated structural reorganization of the transcriptional coactivator p300.
Biochemistry, 2019
3IYX
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BU of 3iyx by Molmil
Coordinates of the b1b bridge-forming protein structures fitted into the Cryo-EM map of E.coli 70S ribosome (EMD-1056)
分子名称: 30S ribosomal protein S13, 50S ribosomal protein L31, 50S ribosomal protein L5
著者Shasmal, M, Chakraborty, B, Sengupta, J.
登録日2010-07-23
公開日2010-09-01
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (9 Å)
主引用文献Intrinsic molecular properties of the protein-protein bridge facilitate ratchet-like motion of the ribosome
Biochem.Biophys.Res.Commun., 399, 2010
3IYY
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BU of 3iyy by Molmil
Coordinates of the b1b bridge-forming protein structures fitted into the Cryo-EM map of EFG.GDPNP-bound E.coli 70S ribosome(EMD-1363)
分子名称: 30S ribosomal protein S13, 50S ribosomal protein L31, 50S ribosomal protein L5
著者Shasmal, M, Chakraborty, B, Sengupta, J.
登録日2010-07-23
公開日2010-09-01
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (10.9 Å)
主引用文献Intrinsic molecular properties of the protein-protein bridge facilitate ratchet-like motion of the ribosome.
Biochem.Biophys.Res.Commun., 399, 2010
1LU3
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BU of 1lu3 by Molmil
Separate Fitting of the Anticodon Loop Region of tRNA (nucleotide 26-42) in the Low Resolution Cryo-EM Map of an EF-Tu Ternary Complex (GDP and Kirromycin) Bound to E. coli 70S Ribosome
分子名称: PHENYLALANINE TRANSFER RNA
著者Valle, M, Sengupta, J, Swami, N.K, Grassucci, R.A, Burkhardt, N, Nierhaus, K.H, Agrawal, R.K, Frank, J.
登録日2002-05-21
公開日2002-06-26
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (16.799999 Å)
主引用文献Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.
EMBO J., 21, 2002
1LS2
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BU of 1ls2 by Molmil
Fitting of EF-Tu and tRNA in the Low Resolution Cryo-EM Map of an EF-Tu Ternary Complex (GDP and Kirromycin) Bound to E. coli 70S Ribosome
分子名称: Elongation Factor Tu, Phenylalanine transfer RNA
著者Valle, M, Sengupta, J, Swami, N.K, Grassucci, R.A, Burkhardt, N, Nierhaus, K.H, Agrawal, R.K, Frank, J.
登録日2002-05-16
公開日2002-06-26
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (16.799999 Å)
主引用文献Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.
EMBO J., 21, 2002

 

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