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Homology Model of Yeast RACK1 Protein fitted into 11.7A cryo-EM map of Yeast 80S Ribosome
分子名称:	Guanine nucleotide-binding protein beta subunit-like protein, Helix 39 of 18S rRNA, Helix 40 of 18S rRNA
著者	Sengupta, J, Nilsson, J, Gursky, R, Spahn, C.M, Nissen, P, Frank, J.
登録日	2004-06-21
公開日	2004-09-28
最終更新日	2024-02-14
実験手法	ELECTRON MICROSCOPY (11.7 Å)
主引用文献	Identification of the versatile scaffold protein RACK1 on the eukaryotic ribosome by cryo-EM Nat.Struct.Mol.Biol., 11, 2004

3DNY

Fitting of the eEF2 crystal structure into the cryo-EM density map of the eEF2.80S.AlF4-.GDP complex
分子名称:	Elongation factor 2
著者	Sengupta, J, Frank, J.
登録日	2008-07-03
公開日	2008-08-05
最終更新日	2024-02-21
実験手法	ELECTRON MICROSCOPY (12.6 Å)
主引用文献	Visualization of the eEF2-80S ribosome transition-state complex by cryo-electron microscopy. J.Mol.Biol., 382, 2008

6IY7

E. coli peptide deformylase crystal structure fitted into the cryo-EM density map of E. coli 70S ribosome in complex with peptide deformylase
分子名称:	Peptide deformylase
著者	Sengupta, J, Akbar, S, Bhakta, S.
登録日	2018-12-13
公開日	2019-04-17
最終更新日	2024-03-27
実験手法	ELECTRON MICROSCOPY (10.5 Å)
主引用文献	Cryo-EM Structures Reveal Relocalization of MetAP in the Presence of Other Protein Biogenesis Factors at the Ribosomal Tunnel Exit. J. Mol. Biol., 431, 2019

6J45

Crystal structure of E. coli peptide deformylase enzyme and chaperone trigger factor fitted into the cryo-EM density map of the complex
分子名称:	Peptide deformylase, Trigger factor
著者	Sengupta, J, Bhakta, S, Akbar, S.
登録日	2019-01-07
公開日	2019-04-17
最終更新日	2024-03-27
実験手法	ELECTRON MICROSCOPY (12.2 Å)
主引用文献	Cryo-EM Structures Reveal Relocalization of MetAP in the Presence of Other Protein Biogenesis Factors at the Ribosomal Tunnel Exit. J. Mol. Biol., 431, 2019

6IZ7

E. coli methionine aminopeptidase crystal structure fitted into the cryo-EM density map of E. coli 70S ribosome in complex with methionine aminopeptidase
分子名称:	Methionine aminopeptidase
著者	Sengupta, J, Bhakta, S, Akbar, S.
登録日	2018-12-18
公開日	2019-04-17
最終更新日	2024-03-27
実験手法	ELECTRON MICROSCOPY (11.8 Å)
主引用文献	Cryo-EM Structures Reveal Relocalization of MetAP in the Presence of Other Protein Biogenesis Factors at the Ribosomal Tunnel Exit. J. Mol. Biol., 431, 2019

7XAM

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth
分子名称:	23S rRNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ...
著者	Sengupta, J, Baid, P.
登録日	2022-03-18
公開日	2023-05-03
最終更新日	2024-05-15
実験手法	ELECTRON MICROSCOPY (3.5 Å)
主引用文献	Cryo-EM captures a unique conformational rearrangement in 23S rRNA helices of the Mycobacterium 50S subunit. Int.J.Biol.Macromol., 253, 2023

7Y41

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth
分子名称:	23S ribosomal RNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ...
著者	Sengupta, J, Baid, P.
登録日	2022-06-13
公開日	2023-05-03
最終更新日	2024-05-15
実験手法	ELECTRON MICROSCOPY (4.1 Å)
主引用文献	Cryo-EM captures a unique conformational rearrangement in 23S rRNA helices of the Mycobacterium 50S subunit. Int.J.Biol.Macromol., 253, 2023

6IZI

Crystal structure of E. coli peptide deformylase and methionine aminopeptidase fitted into the cryo-EM density map of the complex
分子名称:	Methionine aminopeptidase, Peptide deformylase
著者	Sengupta, J, Bhakta, S, Akbar, S.
登録日	2018-12-19
公開日	2019-04-17
最終更新日	2024-03-27
実験手法	ELECTRON MICROSCOPY (11.8 Å)
主引用文献	Cryo-EM Structures Reveal Relocalization of MetAP in the Presence of Other Protein Biogenesis Factors at the Ribosomal Tunnel Exit. J. Mol. Biol., 431, 2019

6J0A

Crystal structure of E. coli methionine aminopeptidase enzyme and chaperone trigger factor fitted into the cryo-EM density map of the complex
分子名称:	Methionine aminopeptidase, Trigger factor
著者	Sengupta, J, Bhakta, S, Akbar, S.
登録日	2018-12-22
公開日	2019-04-17
最終更新日	2024-03-27
実験手法	ELECTRON MICROSCOPY (14.2 Å)
主引用文献	Cryo-EM Structures Reveal Relocalization of MetAP in the Presence of Other Protein Biogenesis Factors at the Ribosomal Tunnel Exit. J. Mol. Biol., 431, 2019

6JR3

Crystal structure of insulin hexamer fitted into cryo EM density map where each dimer was kept as rigid body
分子名称:	Insulin A chain, Insulin B chain
著者	Sengupta, J, Pathak, B.K, Bhakta, S.
登録日	2019-04-02
公開日	2020-04-22
最終更新日	2024-03-27
実験手法	ELECTRON MICROSCOPY (14.5 Å)
主引用文献	Resveratrol as a nontoxic excipient stabilizes insulin in a bioactive hexameric form. J.Comput.Aided Mol.Des., 34, 2020

4V69

Ternary complex-bound E.coli 70S ribosome.
分子名称:	16S rRNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者	Villa, E, Sengupta, J, Trabuco, L.G, LeBarron, J, Baxter, W.T, Shaikh, T.R, Grassucci, R.A, Nissen, P, Ehrenberg, M, Schulten, K, Frank, J.
登録日	2008-12-11
公開日	2014-07-09
最終更新日	2024-02-28
実験手法	ELECTRON MICROSCOPY (6.7 Å)
主引用文献	Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis Proc.Natl.Acad.Sci.USA, 106, 2009

4V47

Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome
分子名称:	16S RIBOSOMAL RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ...
著者	Gao, H, Sengupta, J, Valle, M, Korostelev, A, Eswar, N, Stagg, S.M, Van Roey, P, Agrawal, R.K, Harvey, S.T, Sali, A, Chapman, M.S, Frank, J.
登録日	2003-05-06
公開日	2014-07-09
最終更新日	2024-02-28
実験手法	ELECTRON MICROSCOPY (12.3 Å)
主引用文献	Study of the structural dynamics of the E. coli 70S ribosome using real space refinement Cell(Cambridge,Mass.), 113, 2003

1ZN1

Coordinates of RRF fitted into Cryo-EM map of the 70S post-termination complex
分子名称:	30S ribosomal protein S12, Ribosome recycling factor, ribosomal 16S RNA, ...
著者	Gao, N, Zavialov, A.V, Li, W, Sengupta, J, Valle, M, Gursky, R.P, Ehrenberg, M, Frank, J.
登録日	2005-05-11
公開日	2005-06-14
最終更新日	2024-02-14
実験手法	ELECTRON MICROSCOPY (14.1 Å)
主引用文献	Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies. Mol.Cell, 18, 2005

4V48

Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome
分子名称:	16S RIBOSOMAL RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ...
著者	Gao, H, Sengupta, J, Valle, M, Korostelev, A, Eswar, N, Stagg, S.M, Van Roey, P, Agrawal, R.K, Harvey, S.T, Sali, A, Chapman, M.S, Frank, J.
登録日	2003-05-06
公開日	2014-07-09
最終更新日	2024-02-28
実験手法	ELECTRON MICROSCOPY (11.5 Å)
主引用文献	Study of the structural dynamics of the E. coli 70S ribosome using real space refinement Cell(Cambridge,Mass.), 113, 2003

1ZN0

Coordinates of RRF and EF-G fitted into Cryo-EM map of the 50S subunit bound with both EF-G (GDPNP) and RRF
分子名称:	16S RIBOSOMAL RNA, ELONGATION FACTOR G, Ribosome recycling factor
著者	Gao, N, Zavialov, A.V, Li, W, Sengupta, J, Valle, M, Gursky, R.P, Ehrenberg, M, Frank, J.
登録日	2005-05-11
公開日	2005-06-14
最終更新日	2024-02-14
実験手法	ELECTRON MICROSCOPY (15.5 Å)
主引用文献	Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies. Mol.Cell, 18, 2005

3IYX

Coordinates of the b1b bridge-forming protein structures fitted into the Cryo-EM map of E.coli 70S ribosome (EMD-1056)
分子名称:	30S ribosomal protein S13, 50S ribosomal protein L31, 50S ribosomal protein L5
著者	Shasmal, M, Chakraborty, B, Sengupta, J.
登録日	2010-07-23
公開日	2010-09-01
最終更新日	2024-02-21
実験手法	ELECTRON MICROSCOPY (9 Å)
主引用文献	Intrinsic molecular properties of the protein-protein bridge facilitate ratchet-like motion of the ribosome Biochem.Biophys.Res.Commun., 399, 2010

3IYY

Coordinates of the b1b bridge-forming protein structures fitted into the Cryo-EM map of EFG.GDPNP-bound E.coli 70S ribosome(EMD-1363)
分子名称:	30S ribosomal protein S13, 50S ribosomal protein L31, 50S ribosomal protein L5
著者	Shasmal, M, Chakraborty, B, Sengupta, J.
登録日	2010-07-23
公開日	2010-09-01
最終更新日	2024-02-21
実験手法	ELECTRON MICROSCOPY (10.9 Å)
主引用文献	Intrinsic molecular properties of the protein-protein bridge facilitate ratchet-like motion of the ribosome. Biochem.Biophys.Res.Commun., 399, 2010

1LS2

Fitting of EF-Tu and tRNA in the Low Resolution Cryo-EM Map of an EF-Tu Ternary Complex (GDP and Kirromycin) Bound to E. coli 70S Ribosome
分子名称:	Elongation Factor Tu, Phenylalanine transfer RNA
著者	Valle, M, Sengupta, J, Swami, N.K, Grassucci, R.A, Burkhardt, N, Nierhaus, K.H, Agrawal, R.K, Frank, J.
登録日	2002-05-16
公開日	2002-06-26
最終更新日	2024-02-14
実験手法	ELECTRON MICROSCOPY (16.799999 Å)
主引用文献	Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process. EMBO J., 21, 2002

1LU3

Separate Fitting of the Anticodon Loop Region of tRNA (nucleotide 26-42) in the Low Resolution Cryo-EM Map of an EF-Tu Ternary Complex (GDP and Kirromycin) Bound to E. coli 70S Ribosome
分子名称:	PHENYLALANINE TRANSFER RNA
著者	Valle, M, Sengupta, J, Swami, N.K, Grassucci, R.A, Burkhardt, N, Nierhaus, K.H, Agrawal, R.K, Frank, J.
登録日	2002-05-21
公開日	2002-06-26
最終更新日	2024-02-14
実験手法	ELECTRON MICROSCOPY (16.799999 Å)
主引用文献	Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process. EMBO J., 21, 2002

1MVR

Decoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S Ribosome
分子名称:	30S RIBOSOMAL PROTEIN S12, 50S ribosomal protein L11, Helix 34 of 16S rRNA, ...
著者	Rawat, U.B, Zavialov, A.V, Sengupta, J, Valle, M, Grassucci, R.A, Linde, J, Vestergaard, B, Ehrenberg, M, Frank, J.
登録日	2002-09-26
公開日	2003-04-01
最終更新日	2024-02-14
実験手法	ELECTRON MICROSCOPY (12.8 Å)
主引用文献	A cryo-electron microscopic study of ribosome-bound termination factor RF2 Nature, 421, 2003

1MI6

Docking of the modified RF2 X-ray structure into the Low Resolution Cryo-EM map of RF2 E.coli 70S Ribosome
分子名称:	peptide chain release factor RF-2
著者	Rawat, U.B.S, Zavialov, A.V, Sengupta, J, Valle, M, Grassucci, R.A, Linde, J, Vestergaard, B, Ehrenberg, M, Frank, J.
登録日	2002-08-22
公開日	2003-01-14
最終更新日	2024-02-14
実験手法	ELECTRON MICROSCOPY (12.8 Å)
主引用文献	A cryo-electron microscopic study of ribosome-bound termination factor RF2 Nature, 421, 2003

5XZC

Cryo-EM structure of p300-p53 protein complex
分子名称:	Cellular tumor antigen p53, Histone acetyltransferase p300
著者	Ghosh, R, Roy, S, Sengupta, J.
登録日	2017-07-12
公開日	2019-01-23
最終更新日	2024-03-27
実験手法	ELECTRON MICROSCOPY (10.7 Å)
主引用文献	Tumor suppressor p53-mediated structural reorganization of the transcriptional coactivator p300. Biochemistry, 2019

6K4N

Cryo-EM structure of p300
分子名称:	Histone acetyltransferase p300
著者	Ghosh, R, Roy, S, Sengupta, J.
登録日	2019-05-24
公開日	2019-06-19
最終更新日	2024-03-27
実験手法	ELECTRON MICROSCOPY (9.8 Å)
主引用文献	Tumor Suppressor p53-Mediated Structural Reorganization of the Transcriptional Coactivator p300. Biochemistry, 58, 2019

7D80

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase
分子名称:	16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者	Akbar, S, Bhakta, S, Sengupta, J.
登録日	2020-10-06
公開日	2021-04-07
最終更新日	2024-05-29
実験手法	ELECTRON MICROSCOPY (4.1 Å)
主引用文献	Structural insights into the interplay of protein biogenesis factors with the 70S ribosome. Structure, 29, 2021

7D6Z

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor
分子名称:	16S ribosomal rRNA, 23S ribosomal rRNA, 30S ribosomal protein S10, ...
著者	Akbar, S, Bhakta, S, Sengupta, J.
登録日	2020-10-02
公開日	2021-04-07
最終更新日	2021-07-14
実験手法	ELECTRON MICROSCOPY (3.4 Å)
主引用文献	Structural insights into the interplay of protein biogenesis factors with the 70S ribosome. Structure, 29, 2021

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