Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5FYD
DownloadVisualize
BU of 5fyd by Molmil
Structural and biochemical insights into 7beta-hydroxysteroid dehydrogenase stereoselectivity
分子名称: GLYCEROL, OXIDOREDUCTASE, SHORT CHAIN DEHYDROGENASE/REDUCTASE FAMILY PROTEIN
著者Savino, S, Ferrandi, E, Forneris, F, Rovida, S, Riva, S, Monti, D, Mattevi, A.
登録日2016-03-07
公開日2016-04-06
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural and Biochemical Insights Into 7Beta-Hydroxysteroid Dehydrogenase Stereoselectivity.
Proteins, 84, 2016
6Y0R
DownloadVisualize
BU of 6y0r by Molmil
Chitooligosaccharide oxidase
分子名称: Chitooligosaccharide oxidase, FLAVIN-ADENINE DINUCLEOTIDE
著者Savino, S, Fraaije, M.W.
登録日2020-02-10
公開日2020-06-03
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.611 Å)
主引用文献Analysis of the structure and substrate scope of chitooligosaccharide oxidase reveals high affinity for C2-modified glucosamines.
Febs Lett., 594, 2020
6H0N
DownloadVisualize
BU of 6h0n by Molmil
The structure of wild-type Arabidopsis thaliana UDP-apiose/UDP-xylose synthase in complex with NAD+ and UDP
分子名称: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, PHOSPHATE ION, UDP-D-apiose/UDP-D-xylose synthase 1, ...
著者Savino, S, Mattevi, A.
登録日2018-07-10
公開日2019-10-23
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3.02 Å)
主引用文献Deciphering the enzymatic mechanism of sugar ring contraction in UDP-apiose biosynthesis.
Nat Catal, 2, 2019
6H0P
DownloadVisualize
BU of 6h0p by Molmil
The structure of C100A mutant of Arabidopsis thaliana UDP-apiose/UDP-xylose synthase in complex with NADH and UDP-D-glucuronic acid
分子名称: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, UDP-D-apiose/UDP-D-xylose synthase 1, URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID
著者Savino, S, Mattevi, A.
登録日2018-07-10
公開日2019-10-23
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3.47 Å)
主引用文献Deciphering the enzymatic mechanism of sugar ring contraction in UDP-apiose biosynthesis.
Nat Catal, 2, 2019
7OG2
DownloadVisualize
BU of 7og2 by Molmil
Crystal structure of Pseudoalteromonas luteoviolacea L-amino acid oxidase
分子名称: Amine oxidoreductase, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Rozeboom, H.J, Savino, S, Fraaije, M.W.
登録日2021-05-06
公開日2021-11-10
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Kinetic and Structural Properties of a Robust Bacterial L-Amino Acid Oxidase
Catalysts, 2021
6QU0
DownloadVisualize
BU of 6qu0 by Molmil
Structure of azoreductase from Bacillus sp. A01
分子名称: FLAVIN MONONUCLEOTIDE, FMN-dependent NADH-azoreductase, GLYCEROL, ...
著者Savino, S, Fraaije, M.W.
登録日2019-02-26
公開日2020-02-05
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Mechanistic and Crystallographic Studies of Azoreductase AzoA fromBacillus wakoensisA01.
Acs Chem.Biol., 15, 2020
5MQ6
DownloadVisualize
BU of 5mq6 by Molmil
Polycyclic Ketone Monooxygenase from the Thermophilic Fungus Thermothelomyces thermophila
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
著者Savino, S, Furst, M.J.L.J, Fraaije, M.W, Mattevi, A.
登録日2016-12-20
公開日2017-01-11
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Polycyclic Ketone Monooxygenase from the Thermophilic Fungus Thermothelomyces thermophila: A Structurally Distinct Biocatalyst for Bulky Substrates.
J. Am. Chem. Soc., 139, 2017
8ATE
DownloadVisualize
BU of 8ate by Molmil
Galacturonic acid oxidase from Citrus sinensis
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Boverio, A, Savino, S, Fraaije, M.W, Loncar, N.
登録日2022-08-23
公開日2023-09-06
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Biochemical and Structural Characterization of a Uronic Acid Oxidase from Citrus sinensis
Chemcatchem, 2023
1YS5
DownloadVisualize
BU of 1ys5 by Molmil
Solution structure of the antigenic domain of GNA1870 of Neisseria meningitidis
分子名称: lipoprotein
著者Cantini, F, Savino, S, Masignani, V, Pizza, M, Scarselli, M, Swennen, E, Romagnoli, G, Veggi, D, Banci, L, Rappuoli, R.
登録日2005-02-07
公開日2006-02-07
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the immunodominant domain of protective antigen GNA1870 of Neisseria meningitidis
J.Biol.Chem., 281, 2006
7ZCB
DownloadVisualize
BU of 7zcb by Molmil
Human Pikachurin/EGFLAM N-terminal Fibronectin-III (1-2) domains
分子名称: CHLORIDE ION, Pikachurin, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Pantalone, S, Savino, S, Viti, L.V, Forneris, F.
登録日2022-03-26
公開日2023-07-19
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure of the photoreceptor synaptic assembly of the extracellular matrix protein pikachurin with the orphan receptor GPR179.
Sci.Signal., 16, 2023
5AJU
DownloadVisualize
BU of 5aju by Molmil
Crystal structure of ligand-free phosphoribohydroxylase lonely guy from Claviceps purpurea in complex with phosphoribose
分子名称: 5-O-phosphono-beta-D-ribofuranose, PHOSPHORIBOHYDROLASE LONELY GUY, SULFATE ION
著者Dzurova, L, Savino, S, Forneris, F.
登録日2015-02-27
公開日2015-06-03
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The Three-Dimensional Structure of "Lonely Guy" from Claviceps Purpurea Provides Insights Into the Phosphoribohydrolase Function of Rossmann Fold-Containing Lysine Decarboxylase-Like Proteins.
Proteins, 83, 2015
5AJT
DownloadVisualize
BU of 5ajt by Molmil
Crystal structure of ligand-free phosphoribohydrolase lonely guy from Claviceps purpurea
分子名称: 1,2-ETHANEDIOL, D(-)-TARTARIC ACID, PHOSPHORIBOHYDROLASE LONELY GUY
著者Dzurova, L, Savino, S, Forneris, F.
登録日2015-02-27
公開日2015-06-03
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.43 Å)
主引用文献The three-dimensional structure of "Lonely Guy" from Claviceps purpurea provides insights into the phosphoribohydrolase function of Rossmann fold-containing lysine decarboxylase-like proteins.
Proteins, 83, 2015
2KC0
DownloadVisualize
BU of 2kc0 by Molmil
Solution structure of the factor H binding protein
分子名称: lipoprotein
著者Cantini, F, Veggi, D, Dragonetti, S, Savino, S, Scarselli, M, Romagnoli, G, Pizza, M, Banci, L, Rappuoli, R.
登録日2008-12-13
公開日2009-02-17
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution Structure of the Factor H-binding Protein, a Survival Factor and Protective Antigen of Neisseria meningitidis
J.Biol.Chem., 284, 2009
6ZLD
DownloadVisualize
BU of 6zld by Molmil
Crystal Structure of UDP-Glucuronic acid 4-epimerase from Bacillus cereus in complex with UDP-Glucuronic acid and NAD
分子名称: Epimerase domain-containing protein, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID
著者Iacovino, L.G, Savino, S, Mattevi, A.
登録日2020-06-30
公開日2020-07-29
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystallographic snapshots of UDP-glucuronic acid 4-epimerase ligand binding, rotation, and reduction.
J.Biol.Chem., 295, 2020
6ZLL
DownloadVisualize
BU of 6zll by Molmil
Crystal Structure of UDP-Glucuronic acid 4-epimerase from Bacillus cereus in complex with UDP-Galacturonic acid and NAD
分子名称: (2S,3R,4S,5R,6R)-6-[[[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-3,4,5-trihydroxy-oxane-2-carboxylic acid, Epimerase domain-containing protein, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Iacovino, L.G, Savino, S, Mattevi, A.
登録日2020-06-30
公開日2020-07-29
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystallographic snapshots of UDP-glucuronic acid 4-epimerase ligand binding, rotation, and reduction.
J.Biol.Chem., 295, 2020
8D1B
DownloadVisualize
BU of 8d1b by Molmil
CryoEM structure of human orphan GPCR GPR179 in complex with extracellular matrix protein pikachurin
分子名称: Pikachurin, Probable G-protein coupled receptor 179
著者Patil, D.N, Martemyanov, K.A.
登録日2022-05-27
公開日2023-07-26
最終更新日2023-08-16
実験手法ELECTRON MICROSCOPY (3.57 Å)
主引用文献Structure of the photoreceptor synaptic assembly of the extracellular matrix protein pikachurin with the orphan receptor GPR179.
Sci.Signal., 16, 2023
8IVW
DownloadVisualize
BU of 8ivw by Molmil
Crystal structure of NRP2 in complex with aNRP2-10 Fab fragment
分子名称: Heavy chian of antibody 10V8 Fab fragment, Light chain of antibody 10V8 Fab fragment, Neuropilin-2
著者Geng, Y, Zhai, L.
登録日2023-03-29
公開日2023-07-12
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (3.205 Å)
主引用文献Inhibition of VEGF binding to neuropilin-2 enhances chemosensitivity and inhibits metastasis in triple-negative breast cancer.
Sci Transl Med, 15, 2023
8IVX
DownloadVisualize
BU of 8ivx by Molmil
Crystal structure of NRP2 in complex with aNRP2-14 Fab fragment
分子名称: 1,2-ETHANEDIOL, Heavy chain of antibody 14V4 Fab fragment, Light chain of antibody 14V4 Fab fragment, ...
著者Geng, Y, Zhai, L.
登録日2023-03-29
公開日2023-07-12
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Inhibition of VEGF binding to neuropilin-2 enhances chemosensitivity and inhibits metastasis in triple-negative breast cancer.
Sci Transl Med, 15, 2023
7NRU
DownloadVisualize
BU of 7nru by Molmil
Structure of a natural chimera of meningococcal factor H binding protein belonging to NL096 strain
分子名称: Factor H binding protein variant 1-2,3.x, SULFATE ION
著者Veggi, D, Malito, E, Bottomley, M.J.
登録日2021-03-04
公開日2022-06-08
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.21998358 Å)
主引用文献Structural characterization of a cross-protective natural chimera of factor H binding protein from meningococcal serogroup B strain NL096.
Comput Struct Biotechnol J, 20, 2022
7ZC9
DownloadVisualize
BU of 7zc9 by Molmil
Human Pikachurin/EGFLAM C-terminal Laminin-G domain (LG3)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Pikachurin, SULFATE ION
著者Pantalone, S, Forneris, F.
登録日2022-03-26
公開日2023-07-19
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of the photoreceptor synaptic assembly of the extracellular matrix protein pikachurin with the orphan receptor GPR179.
Sci.Signal., 16, 2023
4CJD
DownloadVisualize
BU of 4cjd by Molmil
Crystal structure of Neisseria meningitidis trimeric autotransporter and vaccine antigen NadA
分子名称: IODIDE ION, NADA
著者Malito, E, Biancucci, M, Spraggon, G, Bottomley, M.J.
登録日2013-12-19
公開日2014-11-26
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.056 Å)
主引用文献Structure of the Meningococcal Vaccine Antigen Nada and Epitope Mapping of a Bactericidal Antibody.
Proc.Natl.Acad.Sci.USA, 111, 2014
4B8Y
DownloadVisualize
BU of 4b8y by Molmil
Ferrichrome-bound FhuD2
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, FE (III) ION, ...
著者Malito, E, Bottomley, M.J, Spraggon, G.
登録日2012-08-31
公開日2012-11-21
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural and Functional Characterization of the Staphylococcus Aureus Virulence Factor and Vaccine Candidate Fhud2.
Biochem.J., 449, 2013
6R14
DownloadVisualize
BU of 6r14 by Molmil
Structure of kiteplatinated dsDNA
分子名称: Kiteplatin, Kiteplatinated DNA oligomer, chain A, ...
著者Margiotta, N, Papadia, P, Kubicek, K, Krejcikova, M, Gkionis, K, Sponer, J.
登録日2019-03-13
公開日2020-04-01
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural characterization of kiteplatinated DNA
To Be Published
2YPV
DownloadVisualize
BU of 2ypv by Molmil
Crystal structure of the Meningococcal vaccine antigen factor H binding protein in complex with a bactericidal antibody
分子名称: 1,2-ETHANEDIOL, FAB 12C1, LIPOPROTEIN
著者Malito, E, Veggi, D, Bottomley, M.J.
登録日2012-11-01
公開日2013-02-20
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Defining a Protective Epitope on Factor H Binding Protein, a Key Meningococcal Virulence Factor and Vaccine Antigen.
Proc.Natl.Acad.Sci.USA, 110, 2013
7YWU
DownloadVisualize
BU of 7ywu by Molmil
Eugenol oxidase from rhodococcus jostii: mutant S81H, A423M, H434Y, S394V, I445D, S518P
分子名称: 2-methoxy-4-(prop-2-en-1-yl)phenol, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
著者Alvigini, L, Mattevi, A.
登録日2022-02-14
公開日2022-11-16
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure- and computational-aided engineering of an oxidase to produce isoeugenol from a lignin-derived compound.
Nat Commun, 13, 2022

 

12>

222926

件を2024-07-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon