Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1D2M
DownloadVisualize
BU of 1d2m by Molmil
UVRB PROTEIN OF THERMUS THERMOPHILUS HB8; A NUCLEOTIDE EXCISION REPAIR ENZYME
分子名称: EXCINUCLEASE ABC SUBUNIT B, SULFATE ION, octyl beta-D-glucopyranoside
著者Nakagawa, N, Sugahara, M, Masui, R, Kato, R, Fukuyama, K, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日1999-09-25
公開日2000-03-22
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of Thermus thermophilus HB8 UvrB protein, a key enzyme of nucleotide excision repair.
J.Biochem.(Tokyo), 126, 1999
3CM0
DownloadVisualize
BU of 3cm0 by Molmil
Crystal structure of adenylate kinase from Thermus thermophilus HB8
分子名称: Adenylate kinase
著者Nakagawa, N, Kondo, N, Masui, R, Matsuda, Z, Iwamoto, I, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-03-20
公開日2008-09-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of adenylate kinase from Thermus thermophilus HB8
To be Published
2Z0M
DownloadVisualize
BU of 2z0m by Molmil
Crystal structure of hypothetical ATP-dependent RNA helicase from Sulfolobus tokodaii
分子名称: 337aa long hypothetical ATP-dependent RNA helicase deaD
著者Nakagawa, N, Kusano, S, Shirouzu, M, Chen, L, Fu, Z.-Q, Chrzas, J, Wang, B.-C, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-07
公開日2007-11-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of hypothetical ATP-dependent RNA helicase from Sulfolobus tokodaii
To be Published
2YZO
DownloadVisualize
BU of 2yzo by Molmil
Crystal structure of uncharacterized conserved protein from Thermotoga maritima
分子名称: D-MALATE, Probable 2-phosphosulfolactate phosphatase
著者Nakagawa, N, Nakamura, Y, Bessho, Y, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-06
公開日2007-11-06
最終更新日2012-02-15
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of uncharacterized conserved protein from Thermotoga maritima
To be Published
2Z0J
DownloadVisualize
BU of 2z0j by Molmil
Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, Putative uncharacterized protein TTHA1438
著者Nakagawa, N, Kukimoto-Niino, M, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-07
公開日2007-11-13
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8
To be Published
2YYV
DownloadVisualize
BU of 2yyv by Molmil
Crystal structure of uncharacterized conserved protein from Thermotoga maritima
分子名称: Probable 2-phosphosulfolactate phosphatase
著者Nakagawa, N, Nakamura, Y, Bessho, Y, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-02
公開日2007-11-06
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of uncharacterized conserved protein from Thermotoga maritima
To be Published
3W90
DownloadVisualize
BU of 3w90 by Molmil
Crystal structure of CMP kinase from Thermus thermophilus HB8
分子名称: Cytidylate kinase
著者Nakagawa, N, Mega, R, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2013-03-22
公開日2013-09-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of CMP kinase: insights into initial substrate recognition and reaction mechanisms
To be Published
3W8N
DownloadVisualize
BU of 3w8n by Molmil
Open form structure of CMP kinase in complex with CMP from Thermus thermophilus HB8
分子名称: CYTIDINE-5'-MONOPHOSPHATE, Cytidylate kinase
著者Nakagawa, N, Mega, R, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2013-03-19
公開日2013-09-25
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of CMP kinase: insights into initial substrate recognition and reaction mechanisms
To be Published
1WYT
DownloadVisualize
BU of 1wyt by Molmil
Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in apo form
分子名称: glycine dehydrogenase (decarboxylating) subunit 1, glycine dehydrogenase subunit 2 (P-protein)
著者Nakai, T, Nakagawa, N, Maoka, N, Masui, R, Kuramitsu, S, Kamiya, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-02-17
公開日2005-04-05
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia
Embo J., 24, 2005
1WIY
DownloadVisualize
BU of 1wiy by Molmil
Crystal Structure Analysis of a 6-coordinated Cytochorome P450 from Thermus thermophilus HB8
分子名称: Cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE
著者Kousumi, Y, Nakagawa, N, Kaneko, M, Yamamoto, H, Masui, R, Kuramitsu, S, Ueyama, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-28
公開日2004-11-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure Analysis of Cytochrome P450 from Thermus thermophilus HB8
To be Published
1WMW
DownloadVisualize
BU of 1wmw by Molmil
Crystal structure of geranulgeranyl diphosphate synthase from Thermus thermophilus
分子名称: geranylgeranyl diphosphate synthetase
著者Suto, K, Nishio, K, Nodake, Y, Hamada, K, Kawamoto, M, Nakagawa, N, Kuramitu, S, Miura, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-07-21
公開日2005-07-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystal structure of geranulgeranyl diphosphate synthase from Thermus thermophilus
To be Published
5H45
DownloadVisualize
BU of 5h45 by Molmil
Crystal structure of the C-terminal Lon protease-like domain of Thermus thermophilus RadA/Sms
分子名称: DNA repair protein RadA
著者Inoue, M, Fukui, K, Fujii, Y, Nakagawa, N, Yano, T, Kuramitsu, S, Masui, R.
登録日2016-10-30
公開日2017-05-03
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The Lon protease-like domain in the bacterial RecA paralog RadA is required for DNA binding and repair.
J. Biol. Chem., 292, 2017
8UQS
DownloadVisualize
BU of 8uqs by Molmil
Crystal structure of the Opossum p53 tetramerization domain
分子名称: Cellular tumor antigen p53 (Fragment)
著者Wahba, H.M, Sakaguchi, S, Nakagawa, N, Wada, J, Kamada, R, Sakaguchi, K, Omichinski, J.G.
登録日2023-10-24
公開日2023-12-20
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Highly Similar Tetramerization Domains from the p53 Protein of Different Mammalian Species Possess Varying Biophysical, Functional and Structural Properties.
Int J Mol Sci, 24, 2023
8UQT
DownloadVisualize
BU of 8uqt by Molmil
Crystal structure of the Tree Shrew p53 tetramerization domain
分子名称: Cellular tumor antigen p53, SULFATE ION
著者Wahba, H.M, Sakaguchi, S, Nakagawa, N, Wada, J, Kamada, R, Sakaguchi, K, Omichinski, J.G.
登録日2023-10-24
公開日2023-12-20
実験手法X-RAY DIFFRACTION (1.16 Å)
主引用文献Highly Similar Tetramerization Domains from the p53 Protein of Different Mammalian Species Possess Varying Biophysical, Functional and Structural Properties.
Int J Mol Sci, 24, 2023
8UQR
DownloadVisualize
BU of 8uqr by Molmil
Crystal structure of the human p53 tetramerization domain
分子名称: Cellular tumor antigen p53
著者Wahba, H.M, Sakaguchi, S, Nakagawa, N, Wada, J, Kamada, R, Sakaguchi, K, Omichinski, J.G.
登録日2023-10-24
公開日2023-12-20
実験手法X-RAY DIFFRACTION (1.22 Å)
主引用文献Highly Similar Tetramerization Domains from the p53 Protein of Different Mammalian Species Possess Varying Biophysical, Functional and Structural Properties.
Int J Mol Sci, 24, 2023
1WYV
DownloadVisualize
BU of 1wyv by Molmil
Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in inhibitor-bound form
分子名称: (AMINOOXY)ACETIC ACID, PYRIDOXAL-5'-PHOSPHATE, glycine dehydrogenase (decarboxylating) subunit 1, ...
著者Nakai, T, Nakagawa, N, Maoka, N, Masui, R, Kuramitsu, S, Kamiya, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-02-17
公開日2005-04-05
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia
Embo J., 24, 2005
1WYU
DownloadVisualize
BU of 1wyu by Molmil
Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in holo form
分子名称: PYRIDOXAL-5'-PHOSPHATE, glycine dehydrogenase (decarboxylating) subunit 1, glycine dehydrogenase subunit 2 (P-protein)
著者Nakai, T, Nakagawa, N, Maoka, N, Masui, R, Kuramitsu, S, Kamiya, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-02-17
公開日2005-04-05
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia
Embo J., 24, 2005
2PCL
DownloadVisualize
BU of 2pcl by Molmil
Crystal structure of ABC transporter with complex (aq_297) from aquifex aeolicus VF5
分子名称: 1,2-ETHANEDIOL, Lipoprotein-releasing system ATP-binding protein lolD, MAGNESIUM ION, ...
著者Jeyakanthan, J, Kanaujia, S.P, Rafi, Z.A, Sekar, K, Ebihara, A, Nakagawa, N, Kuramitsu, S, Shinkai, A, Shiro, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-30
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of ABC transporter with complex (aq_297) from aquifex aeolicus VF5
To be Published
2PCJ
DownloadVisualize
BU of 2pcj by Molmil
Crystal structure of ABC transporter (aq_297) From Aquifex Aeolicus VF5
分子名称: Lipoprotein-releasing system ATP-binding protein lolD, SULFITE ION
著者Jeyakanthan, J, Kanaujia, S.P, Vasuki Ranjani, C, Sekar, K, Nakagawa, N, Ebihara, A, Kuramitsu, S, Shinkai, A, Shiro, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-30
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of ABC transporter (aq_297) From Aquifex Aeolicus VF5
To be Published
2PLR
DownloadVisualize
BU of 2plr by Molmil
Crystal structure of dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7
分子名称: 1,2-ETHANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
著者Kanaujia, S.P, Jeyakanthan, J, Rafi, Z.A, Sekar, K, Nakagawa, N, Ebihara, A, Kuramitsu, S, Shinkai, A, Shiro, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-20
公開日2008-04-22
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7
To be Published
2PBR
DownloadVisualize
BU of 2pbr by Molmil
Crystal structure of thymidylate kinase (aq_969) from Aquifex Aeolicus VF5
分子名称: SULFATE ION, Thymidylate kinase
著者Jeyakanthan, J, Kanaujia, S.P, Vasuki Ranjani, C, Sekar, K, Nakagawa, N, Ebihara, A, Kuramitsu, S, Shinkai, A, Shiro, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-29
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Crystal structure of thymidylate kinase (aq_969) from Aquifex Aeolicus VF5
To be Published
1WXX
DownloadVisualize
BU of 1wxx by Molmil
Crystal structure of Tt1595, a putative SAM-dependent methyltransferase from Thermus thermophillus HB8
分子名称: PHOSPHATE ION, POTASSIUM ION, hypothetical protein TTHA1280
著者Pioszak, A.A, Murayama, K, Nakagawa, N, Ebihara, A, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-02-02
公開日2005-08-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structures of a putative RNA 5-methyluridine methyltransferase, Thermus thermophilus TTHA1280, and its complex with S-adenosyl-L-homocysteine.
Acta Crystallogr.,Sect.F, 61, 2005
1WKK
DownloadVisualize
BU of 1wkk by Molmil
Crystal Structure of Nucleoside Diphosphate Kinase from Thermus thermophilus HB8 in Complex with GDP
分子名称: GUANOSINE-5'-DIPHOSPHATE, nucleoside diphosphate kinase
著者Takeishi, S, Nakagawa, N, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-06-01
公開日2005-08-23
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal Structure of Nucleoside Diphosphate Kinase from Thermus thermophilus HB8
To be Published
1WKL
DownloadVisualize
BU of 1wkl by Molmil
Crystal Structure of Nucleoside Diphosphate Kinase from Thermus thermophilus HB8 in Complex with ATP and ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Takeishi, S, Nakagawa, N, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-06-01
公開日2005-08-23
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal Structure of Nucleoside Diphosphate Kinase from Thermus thermophilus HB8
To be Published
1WXW
DownloadVisualize
BU of 1wxw by Molmil
Crystal structure of Tt1595, a putative SAM-dependent methyltransferase from Thermus thermophillus HB8
分子名称: HEXANE-1,6-DIOL, hypothetical protein TTHA1280
著者Pioszak, A.A, Murayama, K, Nakagawa, N, Ebihara, A, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-02-02
公開日2005-08-02
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Structures of a putative RNA 5-methyluridine methyltransferase, Thermus thermophilus TTHA1280, and its complex with S-adenosyl-L-homocysteine.
Acta Crystallogr.,Sect.F, 61, 2005

221051

件を2024-06-12に公開中

PDB statisticsPDBj update infoContact PDBjnumon