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6U5B
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BU of 6u5b by Molmil
CryoEM Structure of Pyocin R2 - precontracted - baseplate
分子名称: Glue PA0627, Ripcord PA0626, Sheath Initiator PA0617, ...
著者Ge, P, Avaylon, J, Scholl, D, Shneider, M.M, Browning, C, Buth, S.A, Plattner, M, Ding, K, Leiman, P.G, Miller, J.F, Zhou, Z.H.
登録日2019-08-27
公開日2020-04-15
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Action of a minimal contractile bactericidal nanomachine.
Nature, 580, 2020
6U5H
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BU of 6u5h by Molmil
CryoEM Structure of Pyocin R2 - precontracted - hub
分子名称: Probable bacteriophage protein Pyocin R2
著者Ge, P, Avaylon, J, Scholl, D, Shneider, M.M, Browning, C, Buth, S.A, Plattner, M, Ding, K, Leiman, P.G, Miller, J.F, Zhou, Z.H.
登録日2019-08-27
公開日2020-04-15
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Action of a minimal contractile bactericidal nanomachine.
Nature, 580, 2020
6U5K
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BU of 6u5k by Molmil
CryoEM Structure of Pyocin R2 - postcontracted - baseplate
分子名称: Glue PA0627, Sheath Initiator PA0617, Sheath PA0622, ...
著者Ge, P, Avaylon, J, Scholl, D, Shneider, M.M, Browning, C, Buth, S.A, Plattner, M, Ding, K, Leiman, P.G, Miller, J.F, Zhou, Z.H.
登録日2019-08-27
公開日2020-04-15
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Action of a minimal contractile bactericidal nanomachine.
Nature, 580, 2020
6U5F
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BU of 6u5f by Molmil
CryoEM Structure of Pyocin R2 - precontracted - collar
分子名称: Collar PA0615, Sheath PA0622, Tube PA0623
著者Ge, P, Avaylon, J, Scholl, D, Shneider, M.M, Browning, C, Buth, S.A, Plattner, M, Ding, K, Leiman, P.G, Miller, J.F, Zhou, Z.H.
登録日2019-08-27
公開日2020-04-15
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Action of a minimal contractile bactericidal nanomachine.
Nature, 580, 2020
6U5J
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BU of 6u5j by Molmil
CryoEM Structure of Pyocin R2 - postcontracted - collar
分子名称: Collar PA0615, Sheath PA0622
著者Ge, P, Avaylon, J, Scholl, D, Shneider, M.M, Browning, C, Buth, S.A, Plattner, M, Ding, K, Leiman, P.G, Miller, J.F, Zhou, Z.H.
登録日2019-08-27
公開日2020-04-15
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Action of a minimal contractile bactericidal nanomachine.
Nature, 580, 2020
6PYT
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BU of 6pyt by Molmil
CryoEM Structure of Pyocin R2 - precontracted - trunk
分子名称: Pyocin sheath PA0622, Pyocin tube PA0623
著者Ge, P, Avaylon, J, Scholl, D, Shneider, M.M, Browning, C, Buth, S.A, Plattner, M, Ding, K, Leiman, P.G, Miller, J.F, Zhou, Z.H.
登録日2019-07-30
公開日2020-04-15
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Action of a minimal contractile bactericidal nanomachine.
Nature, 580, 2020
3J9R
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BU of 3j9r by Molmil
Atomic structures of a bactericidal contractile nanotube in its pre- and post-contraction states
分子名称: sheath
著者Ge, P, Scholl, D, Leiman, P.G, Yu, X, Miller, J.F, Zhou, Z.H.
登録日2015-02-17
公開日2015-04-01
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Atomic structures of a bactericidal contractile nanotube in its pre- and postcontraction states.
Nat.Struct.Mol.Biol., 22, 2015
3J4U
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BU of 3j4u by Molmil
A new topology of the HK97-like fold revealed in Bordetella bacteriophage: non-covalent chainmail secured by jellyrolls
分子名称: cementing protein, major capsid protein
著者Zhang, X, Guo, H, Jin, L, Czornyj, E, Hodes, A, Hui, W.H, Nieh, A.W, Miller, J.F, Zhou, Z.H.
登録日2013-10-09
公開日2013-12-25
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献A new topology of the HK97-like fold revealed in Bordetella bacteriophage by cryoEM at 3.5 A resolution.
Elife, 2, 2013
3J9Q
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BU of 3j9q by Molmil
Atomic structures of a bactericidal contractile nanotube in its pre- and post-contraction states
分子名称: sheath, tube
著者Ge, P, Scholl, D, Leiman, P.G, Yu, X, Miller, J.F, Zhou, Z.H.
登録日2015-02-17
公開日2015-04-01
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Atomic structures of a bactericidal contractile nanotube in its pre- and postcontraction states.
Nat.Struct.Mol.Biol., 22, 2015
2FDE
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BU of 2fde by Molmil
Wild type HIV protease bound with GW0385
分子名称: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL [(1S,2R)-3-[(1,3-BENZODIOXOL-5-YLSULFONYL)(ISOBUTYL)AMINO]-2-HYDROXY-1-{4-[(2-METHYL-1,3-THIAZOL-4-YL)METHOXY]BENZYL}PROPYL]CARBAMATE, Gag-Pol polyprotein, POTASSIUM ION
著者Xu, R.X.
登録日2005-12-13
公開日2006-02-21
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Ultra-potent P1 modified arylsulfonamide HIV protease inhibitors: The discovery of GW0385.
Bioorg.Med.Chem.Lett., 16, 2006
2FDD
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BU of 2fdd by Molmil
Crystal structure of HIV protease D545701 bound with GW0385
分子名称: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL [(1S,2R)-3-[(1,3-BENZODIOXOL-5-YLSULFONYL)(ISOBUTYL)AMINO]-2-HYDROXY-1-{4-[(2-METHYL-1,3-THIAZOL-4-YL)METHOXY]BENZYL}PROPYL]CARBAMATE, Gag-Pol polyprotein
著者Xu, R.X.
登録日2005-12-13
公開日2006-02-21
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Ultra-potent P1 modified arylsulfonamide HIV protease inhibitors: The discovery of GW0385.
Bioorg.Med.Chem.Lett., 16, 2006
5IOO
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BU of 5ioo by Molmil
Accommodation of massive sequence variation in Nanoarchaeota by the C-type lectin fold
分子名称: AvpA, MAGNESIUM ION
著者Handa, S, Paul, B, Miller, J, Valentine, D, Ghosh, P.
登録日2016-03-08
公開日2016-11-09
最終更新日2019-12-11
実験手法X-RAY DIFFRACTION (2.521 Å)
主引用文献Conservation of the C-type lectin fold for accommodating massive sequence variation in archaeal diversity-generating retroelements.
Bmc Struct.Biol., 16, 2016
4DWL
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BU of 4dwl by Molmil
Avd molecule from Bordetella bacteriophage DGR
分子名称: Bbp7, PHOSPHATE ION
著者Ghosh, P, Al-Ayyoubi, M.
登録日2012-02-24
公開日2013-02-27
最終更新日2015-01-14
実験手法X-RAY DIFFRACTION (2.69 Å)
主引用文献Structure of the essential diversity-generating retroelement protein bAvd and its functionally important interaction with reverse transcriptase.
Structure, 21, 2013
5W5E
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BU of 5w5e by Molmil
Re-refinement of the pyocin tube structure
分子名称: FIIR2 protein
著者Wang, F, Zheng, W, Taylor, N.M, Guerrero-Ferreira, R.C, Leiman, P.G, Egelman, E.H.
登録日2017-06-15
公開日2017-08-16
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Refined Cryo-EM Structure of the T4 Tail Tube: Exploring the Lowest Dose Limit.
Structure, 25, 2017
2IOU
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BU of 2iou by Molmil
Major Tropism Determinant P1 (Mtd-P1) Variant Complexed with Bordetella brochiseptica Virulence Factor Pertactin extracellular domain (Prn-E).
分子名称: MAGNESIUM ION, Major Tropism Determinant P1, Pertactin Extracellular Domain
著者Miller, J.L, Ghosh, P.
登録日2006-10-10
公開日2007-10-23
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (3.16 Å)
主引用文献Selective Ligand Recognition by a Diversity-Generating Retroelement Variable Protein
Plos Biol., 6, 2008
5CES
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BU of 5ces by Molmil
C-terminal domain of the R-type pyocin baseplate protein PA0618
分子名称: PA0618
著者Plattner, M, Buth, S.A, Shneider, M.M, Leiman, P.G.
登録日2015-07-07
公開日2016-07-27
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.102 Å)
主引用文献Action of a minimal contractile bactericidal nanomachine.
Nature, 580, 2020
1YU4
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BU of 1yu4 by Molmil
Major Tropism Determinant U1 Variant
分子名称: MAGNESIUM ION, Major Tropism Determinant (Mtd-U1)
著者McMahon, S.A, Miller, J.L, Lawton, J.A, Ghosh, P.
登録日2005-02-11
公開日2005-09-20
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献The C-type lectin fold as an evolutionary solution for massive sequence variation
Nat.Struct.Mol.Biol., 12, 2005
1YU1
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BU of 1yu1 by Molmil
Major Tropism Determinant P3c Variant
分子名称: MAGNESIUM ION, METHYL MERCURY ION, Major Tropism Determinant (Mtd-P3c)
著者McMahon, S.A, Miller, J.L, Lawton, J.A, Ghosh, P.
登録日2005-02-11
公開日2005-09-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献The C-type lectin fold as an evolutionary solution for massive sequence variation
Nat.Struct.Mol.Biol., 12, 2005
1YU2
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BU of 1yu2 by Molmil
Major Tropism Determinant M1 Variant
分子名称: MAGNESIUM ION, Major Tropism Determinant (Mtd-M1)
著者McMahon, S.A, Miller, J.L, Lawton, J.A, Ghosh, P.
登録日2005-02-11
公開日2005-09-20
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献The C-type lectin fold as an evolutionary solution for massive sequence variation
Nat.Struct.Mol.Biol., 12, 2005
1YU0
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BU of 1yu0 by Molmil
Major Tropism Determinant P1 Variant
分子名称: CALCIUM ION, Major Tropism Determinant (Mtd-P1)
著者McMahon, S.A, Miller, J.L, Lawton, J.A, Ghosh, P.
登録日2005-02-11
公開日2005-09-20
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献The C-type lectin fold as an evolutionary solution for massive sequence variation
Nat.Struct.Mol.Biol., 12, 2005
1YU3
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BU of 1yu3 by Molmil
Major Tropism Determinant I1 Variant
分子名称: MAGNESIUM ION, Major Tropism Determinant (Mtd-I1)
著者McMahon, S.A, Miller, J.L, Lawton, J.A, Ghosh, P.
登録日2005-02-11
公開日2005-09-20
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.52 Å)
主引用文献The C-type lectin fold as an evolutionary solution for massive sequence variation
Nat.Struct.Mol.Biol., 12, 2005

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