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4WNG
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BU of 4wng by Molmil
Crystal structure of the TPR domain of LGN in complex with Frmpd4/Preso1 at 2.1 Angstrom resolution
分子名称: FERM and PDZ domain-containing protein 4, G-protein-signaling modulator 2
著者Takayanagi, H, Yuzawa, S, Sumimoto, H.
登録日2014-10-11
公開日2015-09-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.11 Å)
主引用文献Structural basis for the recognition of the scaffold protein Frmpd4/Preso1 by the TPR domain of the adaptor protein LGN
Acta Crystallogr.,Sect.F, 71, 2015
4WNE
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BU of 4wne by Molmil
Crystal structure of the TPR domain of LGN in complex with Frmpd4/Preso1 at 2.0 Angstrom resolution
分子名称: G-protein-signaling modulator 2, Peptide from FERM and PDZ domain-containing protein 4
著者Takayanagi, H, Yuzawa, S, Sumimoto, H.
登録日2014-10-11
公開日2015-09-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis for the recognition of the scaffold protein Frmpd4/Preso1 by the TPR domain of the adaptor protein LGN
Acta Crystallogr.,Sect.F, 71, 2015
4WND
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BU of 4wnd by Molmil
Crystal structure of the TPR domain of LGN in complex with Frmpd4/Preso1 at 1.5 Angstrom resolution
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, FERM and PDZ domain-containing protein 4, ...
著者Takayanagi, H, Yuzawa, S, Sumimoto, H.
登録日2014-10-11
公開日2015-09-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural basis for the recognition of the scaffold protein Frmpd4/Preso1 by the TPR domain of the adaptor protein LGN
Acta Crystallogr.,Sect.F, 71, 2015
4WNF
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BU of 4wnf by Molmil
Crystal structure of the oxidized TPR domain of LGN in complex with Frmpd4/Preso1 at 2.9 Angstrom resolution
分子名称: FERM and PDZ domain-containing protein 4, G-protein-signaling modulator 2
著者Takayanagi, H, Yuzawa, S, Sumimoto, H.
登録日2014-10-11
公開日2015-09-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural basis for the recognition of the scaffold protein Frmpd4/Preso1 by the TPR domain of the adaptor protein LGN
Acta Crystallogr.,Sect.F, 71, 2015
2DCH
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BU of 2dch by Molmil
Crystal structure of archaeal intron-encoded homing endonuclease I-Tsp061I
分子名称: CHLORIDE ION, SULFATE ION, putative homing endonuclease
著者Nakayama, H, Tsuge, H, Shimamura, T, Miyano, M, Nomura, N, Sako, Y.
登録日2006-01-06
公開日2006-07-06
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.06 Å)
主引用文献Structure of a hyperthermophilic archaeal homing endonuclease, I-Tsp061I: contribution of cross-domain polar networks to thermostability.
J.Mol.Biol., 365, 2007
4UWD
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BU of 4uwd by Molmil
HIF prolyl hydroxylase 2 (PHD2/ EGLN1) D315E VARIANT in complex with Mn(II) and N-[(1-chloro-4-hydroxyisoquinolin-3-yl)carbonyl]glycine (IOX3/UN9)
分子名称: EGL NINE HOMOLOG 1, MANGANESE (II) ION, N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE
著者Chowdhury, R, Tarhonskaya, H, Schofield, C.J.
登録日2014-08-11
公開日2014-08-27
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.721 Å)
主引用文献Investigating the Contribution of the Active Site Environment to the Slow Reaction of Hypoxia-Inducible Factor Prolyl Hydroxylase Domain 2 with Oxygen.
Biochem.J., 463, 2014
6KA4
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BU of 6ka4 by Molmil
Cryo-EM structure of the AtMLKL3 tetramer
分子名称: F22L4.1 protein
著者Lisa, M, Huang, M, Zhang, X, Ryohei, T.N, Leila, B.K, Isabel, M.L.S, Florence, J, Viera, K, Dmitry, L, Jane, E.P, James, M.M, Kay, H, Paul, S.L, Chai, J, Takaki, M.
登録日2019-06-20
公開日2020-09-23
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Cryo-EM structure of the AtMLKL3 tetramer
To Be Published
6LBA
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BU of 6lba by Molmil
Cryo-EM structure of the AtMLKL2 tetramer
分子名称: Protein kinase family protein
著者Lisa, M, Huang, M, Zhang, X, Ryohei, T.N, Leila, B.K, Isabel, M.L.S, Florence, J, Viera, K, Dmitry, L, Jane, E.P, James, M.M, Kay, H, Paul, S.L, Chai, J, Takaki, M.
登録日2019-11-13
公開日2020-11-18
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Cryo-EM structure of the AtMLKL3 tetramer
To Be Published
1BBP
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BU of 1bbp by Molmil
MOLECULAR STRUCTURE OF THE BILIN BINDING PROTEIN (BBP) FROM PIERIS BRASSICAE AFTER REFINEMENT AT 2.0 ANGSTROMS RESOLUTION.
分子名称: BILIN BINDING PROTEIN, BILIVERDIN IX GAMMA CHROMOPHORE
著者Huber, R, Schneider, M, Mayr, I, Mueller, R, Deutzmann, R, Suter, F, Zuber, H, Falk, H, Kayser, H.
登録日1990-09-19
公開日1991-10-15
最終更新日2017-11-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Molecular structure of the bilin binding protein (BBP) from Pieris brassicae after refinement at 2.0 A resolution.
J.Mol.Biol., 198, 1987
5XND
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BU of 5xnd by Molmil
Solution structure of the major fish allergen parvalbumin Sco j 1 derived from the Pacific mackerel
分子名称: CALCIUM ION, Parvalbumin beta
著者Kumeta, H, Nakayama, H, Ogura, K.
登録日2017-05-22
公開日2017-12-27
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structure of the major fish allergen parvalbumin Sco j 1 derived from the Pacific mackerel
Sci Rep, 7, 2017
2ZCF
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BU of 2zcf by Molmil
Mutational study on Alpha-Gln90 of Fe-type nitrile hydratase from Rhodococcus sp. N771
分子名称: FE (III) ION, MAGNESIUM ION, Nitrile hydratase subunit alpha, ...
著者Takarada, H, Kawano, Y, Hashimoto, K, Nakayama, H, Ueda, S, Yohda, M, Kamiya, N, Dohmae, N, Maeda, M, Odaka, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-11-08
公開日2007-11-20
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Mutational study on alphaGln90 of Fe-type nitrile hydratase from Rhodococcus sp. N771
Biosci.Biotechnol.Biochem., 70, 2006
5C5U
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BU of 5c5u by Molmil
The crystal structure of viral collagen prolyl hydroxylase vCPH from Paramecium Bursaria Chlorella virus-1 - Truncated Construct
分子名称: ACETATE ION, MANGANESE (II) ION, Prolyl 4-hydroxylase, ...
著者Longbotham, J.E, Levy, C.W, Johannisen, L.O, Tarhonskaya, H, Jiang, S, Loenarz, C, Flashman, E, Hay, S, Schofiled, C.J, Scrutton, N.S.
登録日2015-06-22
公開日2015-09-30
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure and Mechanism of a Viral Collagen Prolyl Hydroxylase.
Biochemistry, 54, 2015
7ZCV
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BU of 7zcv by Molmil
Rgg144 of Streptococcus pneumoniae
分子名称: Transcriptional regulator
著者Wallis, R, Girija, U.V, Yesilkaya, H.
登録日2022-03-29
公開日2022-06-01
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure-function analysis for the development of peptide inhibitors for a Gram-positive quorum sensing system.
Mol.Microbiol., 117, 2022
7DHW
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BU of 7dhw by Molmil
Crystal structure of myosin-XI motor domain in complex with ADP-ALF4
分子名称: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
著者Suzuki, K, Haraguchi, T, Tamanaha, M, Yoshimura, K, Imi, T, Tominaga, M, Sakayama, H, Nishiyama, T, Ito, K, Murata, T.
登録日2020-11-17
公開日2021-05-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.84 Å)
主引用文献Discovery of ultrafast myosin, its amino acid sequence, and structural features.
Proc.Natl.Acad.Sci.USA, 119, 2022
2CZ0
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BU of 2cz0 by Molmil
photo-activation state of Fe-type NHase in aerobic condition
分子名称: BUTANOIC ACID, FE (III) ION, Nitrile hydratase subunit alpha, ...
著者Kawano, Y, Hashimoto, K, Odaka, M, Nakayama, H, Takio, K, Endo, I, Kamiya, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-07-09
公開日2006-01-09
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献photo-activation state of Fe-type NHase in aerobic condition
To be Published
2CZ1
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BU of 2cz1 by Molmil
photo-activation state of Fe-type NHase with n-BA in anaerobic condition
分子名称: BUTANOIC ACID, FE (III) ION, MAGNESIUM ION, ...
著者Kawano, Y, Hashimoto, K, Odaka, M, Nakayama, H, Takio, K, Endo, I, Kamiya, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-07-09
公開日2006-01-09
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.39 Å)
主引用文献photo-activation state of Fe-type NHase with n-BA in anaerobic condition
To be Published
2CYZ
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BU of 2cyz by Molmil
photo-activation state of Fe-type NHase in anaerobic condition
分子名称: FE (III) ION, MAGNESIUM ION, Nitrile hydratase subunit alpha, ...
著者Kawano, Y, Hashimoto, K, Odaka, M, Nakayama, H, Takio, K, Endo, I, Kamiya, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-07-09
公開日2006-01-09
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献photo-activation state of Fe-type NHase in anaerobic condition
To be Published
7O4D
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BU of 7o4d by Molmil
QR2 inhibitor from a novel sulfanamide series to tackle age related oxidative stress and cognitive decline
分子名称: 8-methyl-2-(4-methyl-3-piperazin-1-ylsulfonyl-phenyl)imidazo[1,2-a]pyridine, FLAVIN-ADENINE DINUCLEOTIDE, Ribosyldihydronicotinamide dehydrogenase [quinone], ...
著者Gould, N.L, Scherer, G.R, Carvalh, S, Shurrush, K, Edry, E, Elkobi, A, David, O, Dym, O, Albeck, S, Peleg, Y, Germain, N, Babaev, I, Sharir, H, Lefker, B, Subramanyam, C, Barr, H, Rosenblum, K.
登録日2021-04-06
公開日2022-08-17
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.249 Å)
主引用文献Specific quinone reductase 2 inhibitors reduce metabolic burden and reverse Alzheimer's disease phenotype in mice.
J.Clin.Invest., 133, 2023
3X26
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BU of 3x26 by Molmil
Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 5 min
分子名称: 2,2-dimethylpropanenitrile, CHLORIDE ION, FE (III) ION, ...
著者Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M.
登録日2014-12-10
公開日2016-01-27
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl., 54, 2015
3X25
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BU of 3x25 by Molmil
Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 700 min
分子名称: 2,2-dimethylpropanenitrile, CHLORIDE ION, FE (III) ION, ...
著者Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M.
登録日2014-12-10
公開日2016-01-27
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl., 54, 2015
3X20
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BU of 3x20 by Molmil
Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 25 min
分子名称: 2,2-dimethylpropanenitrile, CHLORIDE ION, FE (III) ION, ...
著者Yamanaka, Y, Hashimoto, K, Noguchi, N, Yohda, M, Odaka, M.
登録日2014-12-03
公開日2016-01-27
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl., 54, 2015
3X24
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BU of 3x24 by Molmil
Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 120 min
分子名称: 2,2-dimethylpropanenitrile, FE (III) ION, MAGNESIUM ION, ...
著者Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M.
登録日2014-12-10
公開日2016-01-27
実験手法X-RAY DIFFRACTION (1.24 Å)
主引用文献Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl., 54, 2015
8H1J
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BU of 8h1j by Molmil
Cryo-EM structure of the TnpB-omegaRNA-target DNA ternary complex
分子名称: Non-target strand, RNA-guided DNA endonuclease TnpB, Target strand, ...
著者Nakagawa, R, Hirano, H, Omura, S, Nureki, O.
登録日2022-10-03
公開日2023-04-12
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Cryo-EM structure of the transposon-associated TnpB enzyme.
Nature, 616, 2023
5SWI
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BU of 5swi by Molmil
Crystal structure of SpGH92 in complex with mannose
分子名称: CALCIUM ION, GLYCEROL, Sugar hydrolase, ...
著者Shapiro-Ward, S, Boraston, A.B.
登録日2016-08-08
公開日2016-12-14
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Molecular Characterization of N-glycan Degradation and Transport in Streptococcus pneumoniae and Its Contribution to Virulence.
PLoS Pathog., 13, 2017
5SWB
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BU of 5swb by Molmil
Crystal structure of N-glycan transport solute binding protein (NgtS) from Streptococcus pneumoniae in complex with Man5GlcNAc
分子名称: CADMIUM ION, Extracellular solute-binding protein, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-5)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Robb, M, Boraston, A.B.
登録日2016-08-08
公開日2016-12-14
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Molecular Characterization of N-glycan Degradation and Transport in Streptococcus pneumoniae and Its Contribution to Virulence.
PLoS Pathog., 13, 2017

 

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