Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2MX1
DownloadVisualize
BU of 2mx1 by Molmil
Structure of the E. coli Threonylcarbamoyl-AMP Synthase TSAC
分子名称: Threonylcarbamoyl-AMP synthase
著者Harris, K.A, Bobay, B.G, Sarachan, K.L, Sims, A.F, Bilbille, Y, Deutsch, C, Iwata-Reuyl, D, Agris, P.F.
登録日2014-12-06
公開日2015-06-17
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献NMR-based Structural Analysis of Threonylcarbamoyl-AMP Synthase and Its Substrate Interactions.
J.Biol.Chem., 290, 2015
5UDG
DownloadVisualize
BU of 5udg by Molmil
Mutant E97Q crystal structure of Bacillus subtilis QueF with a disulfide Cys 55-99
分子名称: MAGNESIUM ION, NADPH-dependent 7-cyano-7-deazaguanine reductase, TRIETHYLENE GLYCOL
著者Mohammad, A, Kiani, M.K, Iwata-Reuyl, D, Stec, B, Swairjo, M.
登録日2016-12-27
公開日2017-03-29
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Protection of the Queuosine Biosynthesis Enzyme QueF from Irreversible Oxidation by a Conserved Intramolecular Disulfide.
Biomolecules, 7, 2017
3D2O
DownloadVisualize
BU of 3d2o by Molmil
Crystal Structure of Manganese-metallated GTP Cyclohydrolase Type IB
分子名称: AZIDE ION, CHLORIDE ION, LITHIUM ION, ...
著者Swairjo, M.A.
登録日2008-05-08
公開日2009-05-12
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Zinc-independent folate biosynthesis: genetic, biochemical, and structural investigations reveal new metal dependence for GTP cyclohydrolase IB
J.Bacteriol., 191, 2009
5K9G
DownloadVisualize
BU of 5k9g by Molmil
Crystal Structure of GTP Cyclohydrolase-IB with Tris
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FORMIC ACID, ...
著者Alvarez, J, Stec, B, Swairjo, M.A.
登録日2016-05-31
公開日2016-09-07
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Mechanism and catalytic strategy of the prokaryotic-specific GTP cyclohydrolase-IB.
Biochem.J., 474, 2017
5CAJ
DownloadVisualize
BU of 5caj by Molmil
Crystal structure of E. coli YaaA, a member of the DUF328/UPF0246 family
分子名称: BENZAMIDINE, CHLORIDE ION, UPF0246 protein YaaA
著者Prahlad, J, Lin, J, Wilson, M.A.
登録日2015-06-29
公開日2016-02-24
最終更新日2020-10-28
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献The DUF328 family member YaaA is a DNA-binding protein with a novel fold.
J.Biol.Chem., 295, 2020
6N9A
DownloadVisualize
BU of 6n9a by Molmil
Crystal Structure of Thermotoga maritima threonylcarbamoyladenosine biosynthesis complex TsaB2D2E2 bound to ATP and carboxy-AMP
分子名称: 2-(2-ETHOXYETHOXY)ETHANOL, 5'-O-[(R)-(carboxyoxy)(hydroxy)phosphoryl]adenosine, ADENOSINE-5'-DIPHOSPHATE, ...
著者Swairjo, M.A, Stec, B.
登録日2018-12-01
公開日2019-05-22
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Conformational communication mediates the reset step in t6A biosynthesis.
Nucleic Acids Res., 47, 2019
8DL3
DownloadVisualize
BU of 8dl3 by Molmil
Crystal structure of the human queuine salvage enzyme DUF2419, complexed with queuine
分子名称: 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, Queuosine salvage protein
著者Hung, S.-H, Swairjo, M.A.
登録日2022-07-06
公開日2022-12-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.26 Å)
主引用文献Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.
Nucleic Acids Res., 51, 2023
4F8B
DownloadVisualize
BU of 4f8b by Molmil
Crystal Structure of the Covalent Thioimide Intermediate of Unimodular Nitrile Reductase QueF
分子名称: 2-amino-5-[(Z)-iminomethyl]-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, MAGNESIUM ION, ...
著者Stec, B, Swairjo, M.A.
登録日2012-05-17
公開日2012-07-11
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.502 Å)
主引用文献Structural basis of biological nitrile reduction.
J.Biol.Chem., 287, 2012
4FGC
DownloadVisualize
BU of 4fgc by Molmil
Crystal Structure of Active Site Mutant C55A of Nitrile Reductase QueF, Bound to Substrate PreQ0
分子名称: 2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDINE-5-CARBONITRILE, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, CALCIUM ION, ...
著者Stec, B, Swairjo, M.A.
登録日2012-06-04
公開日2012-07-11
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.498 Å)
主引用文献Structural basis of biological nitrile reduction.
J.Biol.Chem., 287, 2012
5K95
DownloadVisualize
BU of 5k95 by Molmil
Crystal Structure of GTP Cyclohydrolase-IB with 8-oxo-GTP
分子名称: 8-OXO-GUANOSINE-5'-TRIPHOSPHATE, GTP cyclohydrolase FolE2, ZINC ION
著者Alvarez, J, Stec, B, Swairjo, M.A.
登録日2016-05-31
公開日2016-09-07
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.77 Å)
主引用文献Mechanism and catalytic strategy of the prokaryotic-specific GTP cyclohydrolase-IB.
Biochem.J., 474, 2017
5JYX
DownloadVisualize
BU of 5jyx by Molmil
Crystal structure of the covalent thioimide intermediate of the archaeosine synthase QueF-Like
分子名称: 2-amino-5-[(Z)-iminomethyl]-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, Archeaosine synthase QueF-Like, SODIUM ION
著者Mei, X, Swairjo, M.A.
登録日2016-05-15
公開日2016-11-09
最終更新日2020-01-29
実験手法X-RAY DIFFRACTION (2.74 Å)
主引用文献Crystal structure of the archaeosine synthase QueF-like-Insights into amidino transfer and tRNA recognition by the tunnel fold.
Proteins, 85, 2017
5K0P
DownloadVisualize
BU of 5k0p by Molmil
Crystal structure of the archaeosine synthase QueF-Like in the apo form
分子名称: Archeaosine synthase QueF-Like, TETRAETHYLENE GLYCOL, THIOCYANATE ION, ...
著者Mei, X, Swairjo, M.A.
登録日2016-05-17
公開日2016-11-09
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Crystal structure of the archaeosine synthase QueF-like-Insights into amidino transfer and tRNA recognition by the tunnel fold.
Proteins, 85, 2017
7UI4
DownloadVisualize
BU of 7ui4 by Molmil
Crystal structure of the DNA preQ0 insertase DpdA
分子名称: DNA-guanine transglycosylase, ZINC ION
著者Hung, S.-H, Swairjo, M.A.
登録日2022-03-28
公開日2023-02-22
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.51 Å)
主引用文献7-Deazaguanines in DNA: functional and structural elucidation of a DNA modification system.
Nucleic Acids Res., 51, 2023
7U07
DownloadVisualize
BU of 7u07 by Molmil
Crystal structure of queuine salvage enzyme DUF2419, apo form
分子名称: Queuine salvage enzyme DUF2419
著者Hung, S.-H, Swairjo, M.A.
登録日2022-02-17
公開日2022-12-21
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.
Nucleic Acids Res., 51, 2023
7U91
DownloadVisualize
BU of 7u91 by Molmil
Crystal structure of queuine salvage enzyme DUF2419, in complex with queuosine-5'-monophosphate
分子名称: 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-7-(5-O-phosphono-beta-D-ribofuranosyl)-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, AMMONIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Hung, S.-H, Swairjo, M.A.
登録日2022-03-09
公開日2022-12-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.
Nucleic Acids Res., 51, 2023
7U1O
DownloadVisualize
BU of 7u1o by Molmil
Crystal structure of queuine salvage enzyme DUF2419 complexed with queuosine
分子名称: 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-7-beta-D-ribofuranosyl-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, DI(HYDROXYETHYL)ETHER, MALONATE ION, ...
著者Hung, S.-H, Swairjo, M.A.
登録日2022-02-21
公開日2022-12-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.
Nucleic Acids Res., 51, 2023
7U5A
DownloadVisualize
BU of 7u5a by Molmil
Crystal structure of queuine salvage enzyme DUF2419 mutant K199C, complexed with queuosine
分子名称: 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-7-beta-D-ribofuranosyl-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, MALONATE ION, Queuine salvage enzyme DUF2419
著者Hung, S.-H, Swairjo, M.A.
登録日2022-03-01
公開日2022-12-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.
Nucleic Acids Res., 51, 2023
7UGK
DownloadVisualize
BU of 7ugk by Molmil
Crystal structure of the human queuine salvage enzyme DUF2419, wild-type apo form
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Queuosine salvage protein DUF2419
著者Hung, S.-H, Swairjo, M.A.
登録日2022-03-24
公開日2022-12-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.
Nucleic Acids Res., 51, 2023
7UK3
DownloadVisualize
BU of 7uk3 by Molmil
Crystal structure of queuine salvage enzyme DUF2419, wild-type (non-His6x tagged)
分子名称: Queuosine salvage protein DUF2419
著者Hung, S.-H, Swairjo, M.A.
登録日2022-03-31
公開日2022-12-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.
Nucleic Acids Res., 51, 2023
7ULC
DownloadVisualize
BU of 7ulc by Molmil
Crystal structure of queuine salvage enzyme DUF2419 mutant D231N, in complex with queuosine-5'-monophosphate
分子名称: 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-7-(5-O-phosphono-beta-D-ribofuranosyl)-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, DI(HYDROXYETHYL)ETHER, Queuosine salvage protein DUF2419
著者Hung, S.-H, Swairjo, M.A.
登録日2022-04-04
公開日2022-12-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.
Nucleic Acids Res., 51, 2023

223790

件を2024-08-14に公開中

PDB statisticsPDBj update infoContact PDBjnumon