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BU of 4ubs by Molmil

The crystal structure of cytochrome P450 105D7 from Streptomyces avermitilis in complex with Diclofenac
分子名称:	2-[2,6-DICHLOROPHENYL)AMINO]BENZENEACETIC ACID, DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, ...
著者	Xu, L.H, Ikeda, H, Arakawa, T, Wakagi, T, Shoun, H, Fushinobu, S.
登録日	2014-08-13
公開日	2014-11-05
最終更新日	2024-03-20
実験手法	X-RAY DIFFRACTION (2.2 Å)
主引用文献	Structural basis for the 4'-hydroxylation of diclofenac by a microbial cytochrome P450 monooxygenase. Appl.Microbiol.Biotechnol., 99, 2015

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BU of 2czq by Molmil

A novel cutinase-like protein from Cryptococcus sp.
分子名称:	1,2-ETHANEDIOL, CITRIC ACID, cutinase-like protein
著者	Masaki, K, Kamini, N.R, Ikeda, H, Iefuji, H, Kondo, H, Suzuki, M, Tsuda, S.
登録日	2005-07-14
公開日	2006-07-14
最終更新日	2012-06-13
実験手法	X-RAY DIFFRACTION (1.05 Å)
主引用文献	Crystal structure and enhanced activity of a cutinase-like enzyme from Cryptococcus sp. strain S-2 Proteins, 77, 2009

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BU of 2rdr by Molmil

Crystal Structure of PtlH with Fe/oxalylglycine bound
分子名称:	1-deoxypentalenic acid 11-beta hydroxylase; Fe(II)/alpha-ketoglutarate dependent hydroxylase, FE (III) ION, MAGNESIUM ION, ...
著者	You, Z, Omura, S, Ikeda, H, Cane, D.E, Jogl, G.
登録日	2007-09-24
公開日	2007-10-16
最終更新日	2024-02-21
実験手法	X-RAY DIFFRACTION (1.7 Å)
主引用文献	Crystal Structure of the Non-heme Iron Dioxygenase PtlH in Pentalenolactone Biosynthesis. J.Biol.Chem., 282, 2007

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BU of 2rdq by Molmil

Crystal Structure of PtlH with Fe/alpha ketoglutarate bound
分子名称:	1-deoxypentalenic acid 11-beta hydroxylase; Fe(II)/alpha-ketoglutarate dependent hydroxylase, 2-OXOGLUTARIC ACID, FE (III) ION, ...
著者	You, Z, Omura, S, Ikeda, H, Cane, D.E, Jogl, G.
登録日	2007-09-24
公開日	2007-10-16
最終更新日	2024-02-21
実験手法	X-RAY DIFFRACTION (1.31 Å)
主引用文献	Crystal Structure of the Non-heme Iron Dioxygenase PtlH in Pentalenolactone Biosynthesis. J.Biol.Chem., 282, 2007

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BU of 2rds by Molmil

Crystal Structure of PtlH with Fe/oxalylglycine and ent-1-deoxypentalenic acid bound
分子名称:	(1S,3aS,5aR,8aS)-1,7,7-trimethyl-1,2,3,3a,5a,6,7,8-octahydrocyclopenta[c]pentalene-4-carboxylic acid, 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II)/alpha-ketoglutarate dependent hydroxylase, FE (III) ION, ...
著者	You, Z, Omura, S, Ikeda, H, Cane, D.E, Jogl, G.
登録日	2007-09-24
公開日	2007-10-16
最終更新日	2024-02-21
実験手法	X-RAY DIFFRACTION (1.65 Å)
主引用文献	Crystal Structure of the Non-heme Iron Dioxygenase PtlH in Pentalenolactone Biosynthesis. J.Biol.Chem., 282, 2007

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BU of 2rdn by Molmil

Crystal Structure of PtlH with AKG and ent-1PL bound
分子名称:	(1S,3aS,5aR,8aS)-1,7,7-trimethyl-1,2,3,3a,5a,6,7,8-octahydrocyclopenta[c]pentalene-4-carboxylic acid, 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II)/alpha-ketoglutarate dependent hydroxylase, 2-OXOGLUTARIC ACID, ...
著者	You, Z, Omura, S, Ikeda, H, Cane, D.E, Jogl, G.
登録日	2007-09-24
公開日	2007-10-16
最終更新日	2024-02-21
実験手法	X-RAY DIFFRACTION (1.35 Å)
主引用文献	Crystal Structure of the Non-heme Iron Dioxygenase PtlH in Pentalenolactone Biosynthesis. J.Biol.Chem., 282, 2007

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BU of 3e5j by Molmil

Crystal structure of CYP105P1 wild-type ligand-free form
分子名称:	Cytochrome P450 (Cytochrome P450 hydroxylase), PROTOPORPHYRIN IX CONTAINING FE
著者	Xu, L.H, Fushinobu, S, Ikeda, H, Wakagi, T, Shoun, H.
登録日	2008-08-14
公開日	2008-12-30
最終更新日	2023-11-01
実験手法	X-RAY DIFFRACTION (1.95 Å)
主引用文献	Crystal structures of cytochrome P450 105P1 from Streptomyces avermitilis: conformational flexibility and histidine ligation state J.Bacteriol., 191, 2009

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BU of 3e5k by Molmil

Crystal structure of CYP105P1 wild-type 4-phenylimidazole complex
分子名称:	4-PHENYL-1H-IMIDAZOLE, Cytochrome P450 (Cytochrome P450 hydroxylase), PROTOPORPHYRIN IX CONTAINING FE
著者	Xu, L.H, Fushinobu, S, Ikeda, H, Wakagi, T, Shoun, H.
登録日	2008-08-14
公開日	2008-12-30
最終更新日	2023-11-01
実験手法	X-RAY DIFFRACTION (2.6 Å)
主引用文献	Crystal structures of cytochrome P450 105P1 from Streptomyces avermitilis: conformational flexibility and histidine ligation state J.Bacteriol., 191, 2009

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BU of 3e5l by Molmil

Crystal structure of CYP105P1 H72A mutant
分子名称:	Cytochrome P450 (Cytochrome P450 hydroxylase), PROTOPORPHYRIN IX CONTAINING FE
著者	Xu, L.H, Fushinobu, S, Ikeda, H, Wakagi, T, Shoun, H.
登録日	2008-08-14
公開日	2008-12-30
最終更新日	2023-11-01
実験手法	X-RAY DIFFRACTION (2.4 Å)
主引用文献	Crystal structures of cytochrome P450 105P1 from Streptomyces avermitilis: conformational flexibility and histidine ligation state J.Bacteriol., 191, 2009

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BU of 3aba by Molmil

Crystal structure of CYP105P1 in complex with filipin I
分子名称:	(3R,4S,6S,8S,10R,12R,14R,16S,17E,19E,21E,23E,25E,28R)-3-hexyl-4,6,8,10,12,14,16-heptahydroxy-17,28-dimethyloxacyclooctacosa-17,19,21,23,25-pentaen-2-one, Cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE, ...
著者	Xu, L.H, Fushinobu, S, Takamatsu, S, Wakagi, T, Ikeda, H, Shoun, H.
登録日	2009-12-04
公開日	2010-04-07
最終更新日	2023-11-01
実験手法	X-RAY DIFFRACTION (1.8 Å)
主引用文献	Regio- and stereospecificity of filipin hydroxylation sites revealed by crystal structures of cytochrome P450 105P1 and 105D6 from Streptomyces avermitilis J.Biol.Chem., 285, 2010

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BU of 3abb by Molmil

Crystal structure of CYP105D6
分子名称:	Cytochrome P450 hydroxylase, PROTOPORPHYRIN IX CONTAINING FE
著者	Xu, L.H, Fushinobu, S, Takamatsu, S, Wakagi, T, Ikeda, H, Shoun, H.
登録日	2009-12-04
公開日	2010-04-07
最終更新日	2023-11-01
実験手法	X-RAY DIFFRACTION (2.3 Å)
主引用文献	Regio- and stereospecificity of filipin hydroxylation sites revealed by crystal structures of cytochrome P450 105P1 and 105D6 from Streptomyces avermitilis J.Biol.Chem., 285, 2010

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BU of 388d by Molmil

CRYSTAL STRUCTURE OF B-DNA WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINES: IMPLICATIONS OF CONFORMATIONAL PREORGANIZATION FOR DUPLEX STABILITY
分子名称:	DNA (5'-D(CPGPCPGPAPAP(TAF)P(TAF)PCPGPCPG)-3'), MAGNESIUM ION
著者	Berger, I, Tereshko, V, Ikeda, H, Marquez, V.E, Egli, M.
登録日	1998-04-20
公開日	1998-05-05
最終更新日	2024-02-21
実験手法	X-RAY DIFFRACTION (1.55 Å)
主引用文献	Crystal structures of B-DNA with incorporated 2'-deoxy-2'-fluoro-arabino-furanosyl thymines: implications of conformational preorganization for duplex stability. Nucleic Acids Res., 26, 1998

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BU of 389d by Molmil

CRYSTAL STRUCTURE OF B-DNA WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINES: IMPLICATIONS OF CONFORMATIONAL PREORGANIZATION FOR DUPLEX STABILITY
分子名称:	DNA (5'-D(CPGPCPGPAPAP(TAF)PTPCPGPCPG)-3'), MAGNESIUM ION
著者	Berger, I, Tereshko, V, Ikeda, H, Marquez, V.E, Egli, M.
登録日	1998-04-20
公開日	1998-05-05
最終更新日	2024-02-21
実験手法	X-RAY DIFFRACTION (1.55 Å)
主引用文献	Crystal structures of B-DNA with incorporated 2'-deoxy-2'-fluoro-arabino-furanosyl thymines: implications of conformational preorganization for duplex stability. Nucleic Acids Res., 26, 1998

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BU of 5hrt by Molmil

Crystal structure of mouse autotaxin in complex with a DNA aptamer
分子名称:	CALCIUM ION, CHLORIDE ION, Ectonucleotide pyrophosphatase/phosphodiesterase family member 2, ...
著者	Kato, K, Nishimasu, H, Morita, J, Ishitani, R, Nureki, O.
登録日	2016-01-24
公開日	2016-04-06
最終更新日	2024-11-06
実験手法	X-RAY DIFFRACTION (1.997 Å)
主引用文献	Structural basis for specific inhibition of Autotaxin by a DNA aptamer Nat.Struct.Mol.Biol., 23, 2016

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BU of 8h87 by Molmil

Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR2 in lipid nanodisc
分子名称:	(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, HcKCR2, PALMITIC ACID, ...
著者	Tajima, S, Kim, Y, Yamashita, K, Fukuda, M, Deisseroth, K, Kato, H.E.
登録日	2022-10-21
公開日	2023-09-06
最終更新日	2024-10-16
実験手法	ELECTRON MICROSCOPY (2.53 Å)
主引用文献	Structural basis for ion selectivity in potassium-selective channelrhodopsins. Cell, 186, 2023

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BU of 8h86 by Molmil

Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR1 in lipid nanodisc
分子名称:	(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, HcKCR1, PALMITIC ACID, ...
著者	Tajima, S, Kim, Y, Yamashita, K, Fukuda, M, Deisseroth, K, Kato, H.E.
登録日	2022-10-21
公開日	2023-09-06
最終更新日	2024-10-23
実験手法	ELECTRON MICROSCOPY (2.56 Å)
主引用文献	Structural basis for ion selectivity in potassium-selective channelrhodopsins. Cell, 186, 2023

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BU of 8iu0 by Molmil

Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR1 H225F mutant in lipid nanodisc
分子名称:	(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, HcKCR1, PALMITIC ACID, ...
著者	Tajima, S, Kim, Y, Nakamura, S, Yamashita, K, Fukuda, M, Deisseroth, K, Kato, H.E.
登録日	2023-03-23
公開日	2023-09-06
最終更新日	2024-11-06
実験手法	ELECTRON MICROSCOPY (2.66 Å)
主引用文献	Structural basis for ion selectivity in potassium-selective channelrhodopsins. Cell, 186, 2023

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BU of 3vmm by Molmil

Crystal structure of BacD, an L-amino acid dipeptide ligase from Bacillus subtilis
分子名称:	(2S)-3-[(S)-[(1R)-1-aminoethyl](phosphonooxy)phosphoryl]-2-benzylpropanoic acid, ADENOSINE-5'-DIPHOSPHATE, Alanine-anticapsin ligase BacD, ...
著者	Shomura, Y, Higuchi, Y.
登録日	2011-12-14
公開日	2012-04-11
最終更新日	2024-03-20
実験手法	X-RAY DIFFRACTION (2.5 Å)
主引用文献	Structural and enzymatic characterization of BacD, an l-amino acid dipeptide ligase from Bacillus subtilis Protein Sci., 2012

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