8ETQ
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6OHH
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![BU of 6ohh by Molmil](/molmil-images/mine/6ohh) | Structure of EF1p2_mFAP2b bound to DFHBI | 分子名称: | (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one, CALCIUM ION, EF1p2_mFAP2b | 著者 | Doyle, L.A, Stoddard, B.L. | 登録日 | 2019-04-05 | 公開日 | 2020-04-08 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Incorporation of sensing modalities into de novo designed fluorescence-activating proteins Nat Commun, 12, 2021
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6CZH
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![BU of 6czh by Molmil](/molmil-images/mine/6czh) | Structure of a redesigned beta barrel, mFAP0, bound to DFHBI | 分子名称: | (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one, mFAP0 | 著者 | Doyle, L.A, Stoddard, B.L. | 登録日 | 2018-04-09 | 公開日 | 2018-09-19 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | De novo design of a fluorescence-activating beta-barrel. Nature, 561, 2018
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6CZI
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![BU of 6czi by Molmil](/molmil-images/mine/6czi) | Structure of a redesigned beta barrel, mFAP1, bound to DFHBI | 分子名称: | (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one, mFAP1 | 著者 | Doyle, L.A, Stoddard, B.L. | 登録日 | 2018-04-09 | 公開日 | 2018-09-19 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | De novo design of a fluorescence-activating beta-barrel. Nature, 561, 2018
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6CZG
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6CZJ
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7R9G
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![BU of 7r9g by Molmil](/molmil-images/mine/7r9g) | Catalytically inactive yeast Pseudouridine Synthase, PUS1, bound to RNA | 分子名称: | CHLORIDE ION, RNA (5'-R(*AP*AP*AP*UP*CP*GP*GP*GP*AP*UP*UP*CP*CP*GP*GP*AP*UP*A)-3'), SULFATE ION, ... | 著者 | Doyle, L.A, Stoddard, B.L. | 登録日 | 2021-06-29 | 公開日 | 2021-12-15 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | The structural basis of mRNA recognition and binding by yeast pseudouridine synthase PUS1. Plos One, 18, 2023
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7R9F
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8EIL
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![BU of 8eil by Molmil](/molmil-images/mine/8eil) | C-Terminal Domain of BrxL from Acinetobacter BREX type I phage restriction system | 分子名称: | MALONIC ACID, Protease Lon-related BREX system protein BrxL, SUCCINIC ACID | 著者 | Doyle, L.A, Stoddard, B.L, Kaiser, B. | 登録日 | 2022-09-15 | 公開日 | 2023-02-22 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.25 Å) | 主引用文献 | Structure, substrate binding and activity of a unique AAA+ protein: the BrxL phage restriction factor. Nucleic Acids Res., 51, 2023
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6D0T
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![BU of 6d0t by Molmil](/molmil-images/mine/6d0t) | De novo design of a fluorescence-activating beta barrel - BB1 | 分子名称: | BB1 | 著者 | Dou, J, Vorobieva, A.A, Sheffler, W, Doyle, L.A, Park, H, Bick, M.J, Mao, B, Foight, G.W, Lee, M, Carter, L, Sankaran, B, Ovchinnikov, S, Marcos, E, Huang, P, Vaughan, J.C, Stoddard, B.L, Baker, D. | 登録日 | 2018-04-10 | 公開日 | 2018-09-19 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (1.63 Å) | 主引用文献 | De novo design of a fluorescence-activating beta-barrel. Nature, 561, 2018
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5BVB
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![BU of 5bvb by Molmil](/molmil-images/mine/5bvb) | Engineered Digoxigenin binder DIG5.1a | 分子名称: | DIG5.1a, DIGOXIGENIN | 著者 | Doyle, L.A, Stoddard, B.L. | 登録日 | 2015-06-04 | 公開日 | 2015-10-28 | 最終更新日 | 2023-09-27 | 実験手法 | X-RAY DIFFRACTION (2.06 Å) | 主引用文献 | CSAR Benchmark Exercise 2013: Evaluation of Results from a Combined Computational Protein Design, Docking, and Scoring/Ranking Challenge. J.Chem.Inf.Model., 56, 2016
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7SQ4
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![BU of 7sq4 by Molmil](/molmil-images/mine/7sq4) | Designed trefoil knot protein, variant 2 | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, Designed trefoil knot protein, variant 2, ... | 著者 | Takushi, B, Doyle, L, Stoddard, B.L, Bradley, P. | 登録日 | 2021-11-04 | 公開日 | 2022-06-29 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (1.493 Å) | 主引用文献 | De novo design of knotted tandem repeat proteins. Nat Commun, 14, 2023
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7SQ3
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![BU of 7sq3 by Molmil](/molmil-images/mine/7sq3) | Designed trefoil knot protein, variant 1 | 分子名称: | CHLORIDE ION, Designed trefoil knot protein, variant 1, ... | 著者 | Takushi, B, Doyle, L, Stoddard, B.L, Bradley, P. | 登録日 | 2021-11-04 | 公開日 | 2022-06-29 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.453 Å) | 主引用文献 | De novo design of knotted tandem repeat proteins. Nat Commun, 14, 2023
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7SQ5
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![BU of 7sq5 by Molmil](/molmil-images/mine/7sq5) | Designed trefoil knot protein, variant 3 | 分子名称: | Designed trefoil knot protein, variant 3, SODIUM ION | 著者 | Takushi, B, Doyle, L, Stoddard, B.L, Bradley, P. | 登録日 | 2021-11-04 | 公開日 | 2022-11-09 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.205 Å) | 主引用文献 | De novo design of knotted tandem repeat proteins. Nat Commun, 14, 2023
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3HOJ
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3B5L
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4J9A
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7T8L
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![BU of 7t8l by Molmil](/molmil-images/mine/7t8l) | BrxR from Acinetobacter BREX type I phage restriction system | 分子名称: | 1,2-ETHANEDIOL, BrxR, CHLORIDE ION | 著者 | Doyle, L, Kaiser, B, Stoddard, B. | 登録日 | 2021-12-16 | 公開日 | 2022-05-18 | 最終更新日 | 2022-06-01 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Identification and characterization of the WYL BrxR protein and its gene as separable regulatory elements of a BREX phage restriction system. Nucleic Acids Res., 50, 2022
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7T8K
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![BU of 7t8k by Molmil](/molmil-images/mine/7t8k) | BrxR from Acinetobacter BREX type I phage restriction system bound to DNA | 分子名称: | 1,2-ETHANEDIOL, BrxR, CHLORIDE ION, ... | 著者 | Doyle, L, Kaiser, B, Stoddard, B. | 登録日 | 2021-12-16 | 公開日 | 2022-05-18 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Identification and characterization of the WYL BrxR protein and its gene as separable regulatory elements of a BREX phage restriction system. Nucleic Acids Res., 50, 2022
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6XR1
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6XR2
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7RDR
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4J8T
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![BU of 4j8t by Molmil](/molmil-images/mine/4j8t) | Engineered Digoxigenin binder DIG10.2 | 分子名称: | DIGOXIGENIN, Engineered Digoxigenin binder protein DIG10.2 | 著者 | Stoddard, B.L, Doyle, L.A. | 登録日 | 2013-02-14 | 公開日 | 2013-06-26 | 最終更新日 | 2024-02-28 | 実験手法 | X-RAY DIFFRACTION (2.05 Å) | 主引用文献 | Computational design of ligand-binding proteins with high affinity and selectivity. Nature, 501, 2013
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8EMC
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8EMH
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