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2E1Q
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BU of 2e1q by Molmil
Crystal Structure of Human Xanthine Oxidoreductase mutant, Glu803Val
分子名称: 2-HYDROXYBENZOIC ACID, BICARBONATE ION, CALCIUM ION, ...
著者Yamaguchi, Y, Matsumura, T, Ichida, K, Okamoto, K, Nishino, T.
登録日2006-10-27
公開日2007-09-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Human xanthine oxidase changes its substrate specificity to aldehyde oxidase type upon mutation of amino acid residues in the active site: roles of active site residues in binding and activation of purine substrate
J.Biochem.(Tokyo), 141, 2007
3ANJ
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BU of 3anj by Molmil
Crystal structure of unsaturated glucuronyl hydrolase from Streptcoccus agalactiae
分子名称: Putative uncharacterized protein gbs1889
著者Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K.
登録日2010-09-02
公開日2010-10-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups
J.Biol.Chem., 286, 2011
3ANK
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BU of 3ank by Molmil
Crystal structure of unsaturated glucuronyl hydrolase mutant D175N from Streptcoccus agalactiae complexed with dGlcA-GalNAc6S
分子名称: 1,2-ETHANEDIOL, 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-6-O-sulfo-beta-D-galactopyranose, Putative uncharacterized protein gbs1889
著者Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K.
登録日2010-09-02
公開日2010-10-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups
J.Biol.Chem., 286, 2011
3ANI
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BU of 3ani by Molmil
Crystal structure of unsaturated glucuronyl hydrolase mutant D175N from Streptcoccus agalactiae
分子名称: Putative uncharacterized protein gbs1889
著者Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K.
登録日2010-09-02
公開日2010-10-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups
J.Biol.Chem., 286, 2011
5X6X
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BU of 5x6x by Molmil
Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
分子名称: 1,2-ETHANEDIOL, mRNA capping enzyme P5
著者Nakamichi, Y, Higashiura, A, Nakagawa, A.
登録日2017-02-23
公開日2018-02-28
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
5X6Z
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BU of 5x6z by Molmil
Crystal structure of Rice Dwarf Virus P5 in complex with GTP and GDP
分子名称: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, mRNA capping enzyme P5
著者Nakamichi, Y, Higashiura, A, Nakagawa, A.
登録日2017-02-23
公開日2018-02-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
5X6Y
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BU of 5x6y by Molmil
Crystal structure of Rice Dwarf Virus P5 in complex with S-adenosylmethionine
分子名称: 1,2-ETHANEDIOL, CITRATE ANION, S-ADENOSYLMETHIONINE, ...
著者Nakamichi, Y, Higashiura, A, Nakagawa, A.
登録日2017-02-23
公開日2018-02-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
5X71
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BU of 5x71 by Molmil
Crystal structure of Rice Dwarf Virus P5 in space group P212121
分子名称: GUANOSINE-5'-MONOPHOSPHATE, mRNA capping enzyme P5
著者Nakamichi, Y, Higashiura, A, Nakagawa, A.
登録日2017-02-23
公開日2018-02-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.568 Å)
主引用文献Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
6KRN
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BU of 6krn by Molmil
Crystal structure of GH30 xylanase B from Talaromyces cellulolyticus expressed by Pichia pastoris in complex with aldotriuronic acid
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-O-methyl-alpha-D-glucopyranuronic acid-(1-2)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose, Mating factor alpha,GH30 Xylanase B, ...
著者Nakamichi, Y, Watanabe, M, Inoue, H.
登録日2019-08-22
公開日2020-06-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.653 Å)
主引用文献Substrate recognition by a bifunctional GH30-7 xylanase B from Talaromyces cellulolyticus.
Febs Open Bio, 10, 2020
6KRL
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BU of 6krl by Molmil
Crystal structure of GH30 xylanase B from Talaromyces cellulolyticus expressed by Pichia pastoris
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ...
著者Nakamichi, Y, Watanabe, M, Inoue, H.
登録日2019-08-22
公開日2020-06-17
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.601 Å)
主引用文献Substrate recognition by a bifunctional GH30-7 xylanase B from Talaromyces cellulolyticus.
Febs Open Bio, 10, 2020
1H2A
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BU of 1h2a by Molmil
SINGLE CRYSTALS OF HYDROGENASE FROM DESULFOVIBRIO VULGARIS
分子名称: FE3-S4 CLUSTER, HYDROGENASE, IRON/SULFUR CLUSTER, ...
著者Higuchi, Y, Yasuoka, N.
登録日1997-10-17
公開日1999-02-09
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Unusual ligand structure in Ni-Fe active center and an additional Mg site in hydrogenase revealed by high resolution X-ray structure analysis.
Structure, 5, 1997
4UBQ
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BU of 4ubq by Molmil
Crystal Structure of IMP-2 Metallo-beta-Lactamase from Acinetobacter spp.
分子名称: ACETATE ION, Beta-lactamase, ZINC ION
著者Yamaguchi, Y, Matsueda, S, Matsunaga, K, Takashio, N, Toma-Fukai, S, Yamagata, Y, Shibata, N, Wachino, J, Shibayama, K, Arakawa, Y, Kurosaki, H.
登録日2014-08-13
公開日2014-12-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of IMP-2 metallo-beta-lactamase from Acinetobacter spp.: comparison of active-site loop structures between IMP-1 and IMP-2.
Biol.Pharm.Bull., 38, 2015
1H2R
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BU of 1h2r by Molmil
THREE-DIMENSIONAL STRUCTURE OF NI-FE HYDROGENASE FROM DESULFIVIBRIO VULGARIS MIYAZAKI F IN THE REDUCED FORM AT 1.4 A RESOLUTION
分子名称: FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, MAGNESIUM ION, ...
著者Higuchi, Y, Ogata, H.
登録日1999-06-14
公開日2000-01-05
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Removal of the bridging ligand atom at the Ni-Fe active site of [NiFe] hydrogenase upon reduction with H2, as revealed by X-ray structure analysis at 1.4 A resolution.
Structure Fold.Des., 7, 1999
7WZU
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BU of 7wzu by Molmil
Crystal structure of metallo-beta-lactamase IMP-6.
分子名称: Beta-lactamase, ZINC ION
著者Yamaguchi, Y, Kurosaki, H.
登録日2022-02-19
公開日2023-01-04
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.954 Å)
主引用文献Difference in the Inhibitory Effect of Thiol Compounds and Demetallation Rates from the Zn(II) Active Site of Metallo-beta-lactamases (IMP-1 and IMP-6) Associated with a Single Amino Acid Substitution.
Acs Infect Dis., 9, 2023
4IJ6
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BU of 4ij6 by Molmil
Crystal Structure of a Novel-type Phosphoserine Phosphatase Mutant (H9A) from Hydrogenobacter thermophilus TK-6 in Complex with L-phosphoserine
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, PHOSPHOSERINE, ...
著者Chiba, Y, Horita, S, Ohtsuka, J, Arai, H, Nagata, K, Igarashi, Y, Tanokura, M, Ishii, M.
登録日2012-12-21
公開日2013-03-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural units important for activity of a novel-type phosphoserine phosphatase from Hydrogenobacter thermophilus TK-6 revealed by crystal structure analysis
J.Biol.Chem., 288, 2013
4IJ5
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Crystal Structure of a Novel-type Phosphoserine Phosphatase from Hydrogenobacter thermophilus TK-6
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Phosphoserine phosphatase 1
著者Chiba, Y, Horita, S, Ohtsuka, J, Arai, H, Nagata, K, Igarashi, Y, Tanokura, M, Ishii, M.
登録日2012-12-21
公開日2013-03-20
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural units important for activity of a novel-type phosphoserine phosphatase from Hydrogenobacter thermophilus TK-6 revealed by crystal structure analysis
J.Biol.Chem., 288, 2013
3L6N
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BU of 3l6n by Molmil
Crystal structure of metallo-beta-lactamase IND-7
分子名称: SULFATE ION, ZINC ION, metallo-beta-lactamase
著者Yamaguchi, Y, Kurosaki, H, Yamagata, Y.
登録日2009-12-23
公開日2010-04-14
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structure of metallo-beta-lactamase IND-7 from a Chryseobacterium indologenes clinical isolate at 1.65-A resolution
J.Biochem., 147, 2010
4TKZ
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BU of 4tkz by Molmil
Crystal structure of phosphotransferase system component EIIA from Streptococcus agalactiae
分子名称: GLYCEROL, Putative uncharacterized protein gbs1890
著者Nakamichi, Y, Maruyama, Y, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2014-05-28
公開日2014-08-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of phosphotransferase system component EIIA from Streptococcus agalactiae
To Be Published
6A9K
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BU of 6a9k by Molmil
Crystal structure of the complex of the hydrolytic antibody Fab 9C10 with a transition-state analog
分子名称: 5-[(2R,3R)-2-[2,2-bis(chloranyl)ethanoylamino]-3-(4-nitrophenyl)-3-[oxidanyl-[[4-[2,2,2-tris(fluoranyl)ethanoylamino]phenyl]methyl]phosphoryl]oxy-propoxy]-5-oxidanylidene-pentanoic acid, IMMUNOGLOBULIN 9C10 H CHAIN, IMMUNOGLOBULIN 9C10 L CHAIN
著者Tsuchiya, Y, Fujii, I, Tada, T, Yamaguchi, A, Tsumuraya, T, Kumon, A.
登録日2018-07-13
公開日2019-07-24
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of the complex of the hydrolytic antibody Fab 9C10 with a transition-state analog
To Be Published
5X70
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BU of 5x70 by Molmil
Crystal structure of Rice Dwarf Virus P5 in complex with a ssRNA oligomer
分子名称: RNA (5'-R(P*GP*GP*CP*AP*AP*A)-3'), mRNA capping enzyme P5
著者Nakamichi, Y, Higashiura, A, Nakagawa, A.
登録日2017-02-23
公開日2018-02-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Crystal structure of capping enzyme from Rice dwarf virus
To Be Published
6M5Z
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BU of 6m5z by Molmil
Catalytic domain of GH30 xylanase C from Talaromyces cellulolyticus
分子名称: ACETATE ION, GH30 Xylanase C, GLYCEROL, ...
著者Nakamichi, Y, Watanabe, M, Inoue, H.
登録日2020-03-12
公開日2021-01-20
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of GH30-7 endoxylanase C from the filamentous fungus Talaromyces cellulolyticus.
Acta Crystallogr.,Sect.F, 76, 2020
7DTM
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BU of 7dtm by Molmil
Crystal structure of metallo-beta-lactamase IMP-1 in complex with citrate.
分子名称: CITRATE ANION, Metallo-beta-lactamase type 2, ZINC ION
著者Yamaguchi, Y, Kurosaki, H.
登録日2021-01-06
公開日2021-08-04
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structures of Metallo-beta-Lactamase (IMP-1) and Its D120E Mutant in Complexes with Citrate and the Inhibitory Effect of the Benzyl Group in Citrate Monobenzyl Ester.
J.Med.Chem., 64, 2021
7DTN
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BU of 7dtn by Molmil
Crystal structure of metallo-beta-lactamase IMP-1 mutant (D120E) in complex with citrate.
分子名称: 2-(2-ETHOXYETHOXY)ETHANOL, CITRATE ANION, Metallo-beta-lactamase type 2, ...
著者Yamaguchi, Y, Kurosaki, H.
登録日2021-01-06
公開日2021-08-04
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal Structures of Metallo-beta-Lactamase (IMP-1) and Its D120E Mutant in Complexes with Citrate and the Inhibitory Effect of the Benzyl Group in Citrate Monobenzyl Ester.
J.Med.Chem., 64, 2021
8IDQ
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Crystal structure of reducing-end xylose-releasing exoxylanase in GH30 from Talaromyces cellulolyticus with xylose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
著者Nakamichi, Y, Watanabe, M, Fujii, T, Inoue, H, Morita, T.
登録日2023-02-14
公開日2023-05-17
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of reducing-end xylose-releasing exoxylanase in subfamily 7 of glycoside hydrolase family 30.
Proteins, 91, 2023
8IDP
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Crystal structure of reducing-end xylose-releasing exoxylanase in GH30 from Talaromyces cellulolyticus
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, ...
著者Nakamichi, Y, Watanabe, M, Fujii, T, Inoue, H, Morita, T.
登録日2023-02-14
公開日2023-05-17
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of reducing-end xylose-releasing exoxylanase in subfamily 7 of glycoside hydrolase family 30.
Proteins, 91, 2023

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