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2CV8
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BU of 2cv8 by Molmil
Crystal structure of tRNA-intron endonuclease from Sulfolobus tokodaii
分子名称: CHLORIDE ION, tRNA-splicing endonuclease
著者Kato-Murayama, M, Bessho, Y, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-06-01
公開日2005-12-01
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of tRNA-intron endonuclease from Sulfolobus tokodaii
To be Published
2CSO
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BU of 2cso by Molmil
Solution structure of the DEP domain of human pleckstrin
分子名称: Pleckstrin
著者Inoue, K, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-05-22
公開日2005-11-22
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the DEP domain of human pleckstrin
to be published
2CU1
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BU of 2cu1 by Molmil
Solution structure of the PB1 domain of human protein kinase MEKK2b
分子名称: Mitogen-activated protein kinase kinase kinase 2
著者Inoue, K, Nagashima, T, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-05-24
公開日2005-11-24
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the PB1 domain of human protein kinase MEKK2b
To be published
2CZ9
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BU of 2cz9 by Molmil
Crystal Structure of galactokinase from Pyrococcus horikoshi
分子名称: CHLORIDE ION, GLYCEROL, Probable galactokinase
著者Inagaki, E, Sakamoto, K, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-07-12
公開日2006-09-26
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal Structure of galactokinase from Pyrococcus horikoshi
To be Published
2CXA
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BU of 2cxa by Molmil
Crystal structure of Leucyl/phenylalanyl-tRNA protein transferase from Escherichia coli
分子名称: Leucyl/phenylalanyl-tRNA-protein transferase
著者Kato-Murayama, M, Bessho, Y, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-06-28
公開日2005-12-28
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The crystal structure of leucyl/phenylalanyl-tRNA-protein transferase from Escherichia coli
Protein Sci., 16, 2007
2CYY
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BU of 2cyy by Molmil
Crystal structure of PH1519 from Pyrococcus horikosii OT3
分子名称: CALCIUM ION, GLUTAMINE, Putative HTH-type transcriptional regulator PH1519
著者Okazaki, N, Nakano, N, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-07-08
公開日2006-09-19
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of PH1519 from Pyrococcus horikosii OT3
To be Published
6ACR
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BU of 6acr by Molmil
Crystal structure of human ALK2 kinase domain with R206H mutation in complex with RK-59638
分子名称: Activin receptor type-1, N-(4-methoxyphenyl)-4-[3-(pyridin-3-yl)-1H-pyrazol-4-yl]pyrimidin-2-amine, SULFATE ION
著者Sakai, N, Mishima-Tsumagari, C, Matsumoto, T, Shirouzu, M.
登録日2018-07-27
公開日2019-03-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Bis-Heteroaryl Pyrazoles: Identification of Orally Bioavailable Inhibitors of Activin Receptor-Like Kinase-2 (R206H).
Chem. Pharm. Bull., 67, 2019
4Z16
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BU of 4z16 by Molmil
Crystal Structure of the Jak3 Kinase Domain Covalently Bound to N-(3-(((5-chloro-2-((2-methoxy-4-(4-methylpiperazin-1-yl)phenyl)amino)pyrimidin-4-yl)amino)methyl)phenyl)acrylamide
分子名称: N-(3-{[(5-chloro-2-{[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimidin-4-yl)amino]methyl}phenyl)prop-2-enamide, Tyrosine-protein kinase JAK3
著者McNally, R, Tan, L, Gray, N.S, Eck, M.J.
登録日2015-03-26
公開日2016-02-10
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Development of Selective Covalent Janus Kinase 3 Inhibitors.
J.Med.Chem., 58, 2015
6JUX
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BU of 6jux by Molmil
Crystal structure of human ALK2 kinase domain with R206H mutation in complex with RK-71807
分子名称: 4-(1-ethyl-3-pyridin-3-yl-pyrazol-4-yl)-~{N}-(4-piperazin-1-ylphenyl)pyrimidin-2-amine, Activin receptor type-1, SULFATE ION
著者Sakai, N, Mishima-Tsumagari, C, Matsumoto, T, Shirouzu, M.
登録日2019-04-15
公開日2020-04-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural Basis of Activin Receptor-Like Kinase 2 (R206H) Inhibition by Bis-heteroaryl Pyrazole-Based Inhibitors for the Treatment of Fibrodysplasia Ossificans Progressiva Identified by the Integration of Ligand-Based and Structure-Based Drug Design Approaches.
Acs Omega, 5, 2020
1RKR
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BU of 1rkr by Molmil
CRYSTAL STRUCTURE OF AZURIN-I FROM ALCALIGENES XYLOSOXIDANS NCIMB 11015
分子名称: AZURIN-I, COPPER (II) ION
著者Li, C, Inoue, T, Gotowda, M, Suzuki, S, Yamaguchi, K, Kataoka, K, Kai, Y.
登録日1997-05-17
公開日1998-05-20
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Structure of azurin I from the denitrifying bacterium Alcaligenes xylosoxidans NCIMB 11015 at 2.45 A resolution.
Acta Crystallogr.,Sect.D, 54, 1998
5VUB
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BU of 5vub by Molmil
Pim1 Kinase in complex with a benzofuranone inhibitor
分子名称: (2Z)-6-methoxy-7-(piperazin-1-ylmethyl)-2-(1H-pyrrolo[3,2-b]pyridin-3-ylmethylidene)-1-benzofuran-3-one, GLYCEROL, Serine/threonine-protein kinase pim-1
著者Parker, L.J.
登録日2017-05-18
公開日2017-12-13
最終更新日2018-01-17
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Theoretical Analysis of Activity Cliffs among Benzofuranone-Class Pim1 Inhibitors Using the Fragment Molecular Orbital Method with Molecular Mechanics Poisson-Boltzmann Surface Area (FMO+MM-PBSA) Approach
J Chem Inf Model, 57, 2017
2GS9
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BU of 2gs9 by Molmil
Crystal structure of TT1324 from Thermus thermophilis HB8
分子名称: FORMIC ACID, Hypothetical protein TT1324, S-ADENOSYL-L-HOMOCYSTEINE
著者Kamitori, S, Abe, A, Ebihara, A, Kanagawa, M, Nakagawa, N, Kuroishi, C, Agari, Y, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-04-25
公開日2007-03-13
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of TT1324 from Thermus thermophilis HB8
To be Published
1E7Z
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BU of 1e7z by Molmil
Crystal structure of the EMAP2/RNA binding domain of the p43 protein from human aminoacyl-tRNA synthetase complex
分子名称: ENDOTHELIAL-MONOCYTE ACTIVATING POLYPEPTIDE II, MERCURY (II) ION
著者Pasqualato, S, Kerjan, P, Renault, L, Menetrey, J, Mirande, M, Cherfils, J.
登録日2000-09-13
公開日2000-11-27
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structure of the Emapii Domain of Human Aminoacyl-tRNA Synthetase Complex Reveals Evolutionary Dimeric Mimicry
Embo J., 20, 2001
7DEV
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BU of 7dev by Molmil
Crystal Structures of Anthocyanin 5,3'-aromatic acyltransferase from Gentiana triflora
分子名称: Anthocyanin 5-aromatic acyltransferase
著者Murayama, K, Kato-Murayama, M, Shirouzu, M.
登録日2020-11-05
公開日2021-09-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Anthocyanin 5,3'-aromatic acyltransferase from Gentiana triflora, a structural insight into biosynthesis of a blue anthocyanin.
Phytochemistry, 186, 2021
7DEX
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BU of 7dex by Molmil
Crystal Structures of Anthocyanin 5,3'-aromatic acyltransferase H174A mutant with caffeoyl-CoA
分子名称: Anthocyanin 5-aromatic acyltransferase, S-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (E)-3-[3,4-bis(oxidanyl)phenyl]prop-2-enethioate
著者Murayama, K, Kato-Murayama, M, Shirouzu, M.
登録日2020-11-05
公開日2021-09-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Anthocyanin 5,3'-aromatic acyltransferase from Gentiana triflora, a structural insight into biosynthesis of a blue anthocyanin.
Phytochemistry, 186, 2021
5K7X
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BU of 5k7x by Molmil
Fully ligated Adenylosuccinate Synthetase from Pyrococcus horikoshii OT3 with GTP, IMP and Hadacidin
分子名称: Adenylosuccinate synthetase, GUANOSINE-5'-TRIPHOSPHATE, HADACIDIN, ...
著者Xie, Y, Cheng, Z.
登録日2016-05-27
公開日2016-12-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.803 Å)
主引用文献Crystal structure of hypothetical adenylosuccinate synthetase, PH0438 from Pyrococcus horikoshii OT3
To Be Published
5XON
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BU of 5xon by Molmil
RNA Polymerase II elongation complex bound with Spt4/5 and TFIIS
分子名称: DNA (48-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ...
著者Ehara, H, Yokoyama, T, Shigematsu, H, Shirouzu, M, Sekine, S.
登録日2017-05-29
公開日2017-08-16
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.83 Å)
主引用文献Structure of the complete elongation complex of RNA polymerase II with basal factors
Science, 357, 2017
2YVQ
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BU of 2yvq by Molmil
Crystal structure of MGS domain of carbamoyl-phosphate synthetase from homo sapiens
分子名称: Carbamoyl-phosphate synthase
著者Xie, Y, Ihsanawati, Kishishita, S, Murayama, K, Takemoto, C, Shirozu, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-13
公開日2008-04-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Crystal structure of MGS domain of carbamoyl-phosphate synthetase from homo sapiens
To be Published
3P0B
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BU of 3p0b by Molmil
Thermus thermophilus family GH57 branching enzyme: crystal structure, mechanism of action and products formed
分子名称: GLYCEROL, TT1467 protein
著者Pijning, T, Dijkstra, B.W.
登録日2010-09-28
公開日2010-10-20
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Thermus thermophilus GLYCOSYL HYDROLASE FAMILY 57 branching enzyme: crystal structure, mechanism of action and products formed
To be Published
4E1B
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BU of 4e1b by Molmil
Re-refinement of PDB entry 2EQA - SUA5 protein from Sulfolobus tokodaii with bound threonylcarbamoyladenylate
分子名称: MAGNESIUM ION, YrdC/Sua5 family protein, threonylcarbamoyladenylate
著者Parthier, C, Goerlich, S, Jaenecke, F, Breithaupt, C, Braeuer, U, Fandrich, U, Clausnitzer, D, Wehmeier, U.F, Boettcher, C, Scheel, D, Stubbs, M.T.
登録日2012-03-06
公開日2012-03-14
最終更新日2012-05-02
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The O-Carbamoyltransferase TobZ Catalyzes an Ancient Enzymatic Reaction.
Angew.Chem.Int.Ed.Engl., 51, 2012
5VUA
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BU of 5vua by Molmil
Pim1 Kinase in complex with a benzofuranone inhibitor
分子名称: (2Z)-6-methoxy-7-(piperazin-1-ylmethyl)-2-(1H-pyrrolo[2,3-c]pyridin-3-ylmethylidene)-1-benzofuran-3-one, GLYCEROL, PHOSPHATE ION, ...
著者Parker, L.J.
登録日2017-05-18
公開日2017-12-13
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Theoretical Analysis of Activity Cliffs among Benzofuranone-Class Pim1 Inhibitors Using the Fragment Molecular Orbital Method with Molecular Mechanics Poisson-Boltzmann Surface Area (FMO+MM-PBSA) Approach
J Chem Inf Model, 57, 2017
5VUC
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BU of 5vuc by Molmil
Pim1 Kinase in complex with a benzofuranone inhibitor
分子名称: (2Z)-2-(1H-indol-3-ylmethylidene)-6-methoxy-7-(piperazin-1-ylmethyl)-1-benzofuran-3-one, GLYCEROL, Serine/threonine-protein kinase pim-1
著者Parker, L.J.
登録日2017-05-18
公開日2017-12-13
最終更新日2018-01-17
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Theoretical Analysis of Activity Cliffs among Benzofuranone-Class Pim1 Inhibitors Using the Fragment Molecular Orbital Method with Molecular Mechanics Poisson-Boltzmann Surface Area (FMO+MM-PBSA) Approach
J Chem Inf Model, 57, 2017
2YRW
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BU of 2yrw by Molmil
Crystal structure of GAR synthetase from Geobacillus kaustophilus
分子名称: PHOSPHATE ION, Phosphoribosylglycinamide synthetase
著者Baba, S, Kanagawa, M, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-03
公開日2007-10-09
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
2YS6
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BU of 2ys6 by Molmil
Crystal structure of GAR synthetase from Geobacillus kaustophilus
分子名称: ADENOSINE MONOPHOSPHATE, GLYCINE, Phosphoribosylglycinamide synthetase
著者Baba, S, Kanagawa, M, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-03
公開日2007-10-09
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
2YS7
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BU of 2ys7 by Molmil
Crystal structure of GAR synthetase from Geobacillus kaustophilus
分子名称: Phosphoribosylglycinamide synthetase
著者Baba, S, Kanagawa, M, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-03
公開日2007-10-09
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010

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