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3NV4
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BU of 3nv4 by Molmil
Crystal structure of human galectin-9 C-terminal CRD in complex with Sialyllactose
分子名称: Galectin 9 short isoform variant, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, NICKEL (II) ION
著者Yoshida, H, Kamitori, S.
登録日2010-07-07
公開日2010-09-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献X-ray structures of human galectin-9 C-terminal domain in complexes with a biantennary oligosaccharide and sialyllactose
J.Biol.Chem., 285, 2010
3NV3
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BU of 3nv3 by Molmil
Crystal structure of human galectin-9 C-terminal CRD in complex with biantennary oligosaccharide
分子名称: Galectin 9 short isoform variant, NICKEL (II) ION, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose
著者Yoshida, H, Kamitori, S.
登録日2010-07-07
公開日2010-09-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献X-ray structures of human galectin-9 C-terminal domain in complexes with a biantennary oligosaccharide and sialyllactose
J.Biol.Chem., 285, 2010
3NV2
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BU of 3nv2 by Molmil
Crystal structure of human galectin-9 C-terminal CRD in complex with N-acetyllactosamine
分子名称: Galectin 9 short isoform variant, NICKEL (II) ION, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose
著者Yoshida, H, Kamitori, S.
登録日2010-07-07
公開日2010-09-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.34 Å)
主引用文献X-ray structures of human galectin-9 C-terminal domain in complexes with a biantennary oligosaccharide and sialyllactose
J.Biol.Chem., 285, 2010
3NV1
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BU of 3nv1 by Molmil
Crystal structure of human galectin-9 C-terminal CRD
分子名称: Galectin 9 short isoform variant, NICKEL (II) ION
著者Yoshida, H, Kamitori, S.
登録日2010-07-07
公開日2010-09-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献X-ray structures of human galectin-9 C-terminal domain in complexes with a biantennary oligosaccharide and sialyllactose
J.Biol.Chem., 285, 2010
8YEJ
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BU of 8yej by Molmil
Cryo-EM structure of the channelrhodopsin GtCCR2 focused on the monomer
分子名称: GtCCR2, RETINAL
著者Tanaka, T, Iida, W, Sano, F.K, Oda, K, Shihoya, W, Nureki, O.
登録日2024-02-22
公開日2024-09-04
最終更新日2024-11-20
実験手法ELECTRON MICROSCOPY (2.86 Å)
主引用文献The high-light-sensitivity mechanism and optogenetic properties of the bacteriorhodopsin-like channelrhodopsin GtCCR4.
Mol.Cell, 84, 2024
8YEK
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BU of 8yek by Molmil
Cryo-EM structure of the channelrhodopsin GtCCR2
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, GtCCR2, RETINAL
著者Tanaka, T, Iida, W, Sano, F.K, Oda, K, Shihoya, W, Nureki, O.
登録日2024-02-22
公開日2024-09-04
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (2.73 Å)
主引用文献The high-light-sensitivity mechanism and optogenetic properties of the bacteriorhodopsin-like channelrhodopsin GtCCR4.
Mol.Cell, 84, 2024
8YEL
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BU of 8yel by Molmil
Cryo-EM structure of the channelrhodopsin GtCCR4
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Cation channel rhodopsin 4, RETINAL
著者Tanaka, T, Iida, W, Sano, F.K, Oda, K, Shihoya, W, Nureki, O.
登録日2024-02-22
公開日2024-09-04
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (2.71 Å)
主引用文献The high-light-sensitivity mechanism and optogenetic properties of the bacteriorhodopsin-like channelrhodopsin GtCCR4.
Mol.Cell, 84, 2024
1K37
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BU of 1k37 by Molmil
NMR Structure of human Epiregulin
分子名称: Epiregulin
著者Sato, K, Miura, K, Tada, M, Aizawa, T, Miyamoto, K, Kawano, K.
登録日2001-10-02
公開日2003-09-30
最終更新日2024-10-23
実験手法SOLUTION NMR
主引用文献Solution structure of epiregulin and the effect of its C-terminal domain for receptor binding affinity
Febs Lett., 553, 2003
1K36
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BU of 1k36 by Molmil
NMR Structure of human Epiregulin
分子名称: Epiregulin
著者Sato, K, Miura, K, Tada, M, Aizawa, T, Miyamoto, K, Kawano, K.
登録日2001-10-02
公開日2003-09-30
最終更新日2024-11-20
実験手法SOLUTION NMR
主引用文献Solution structure of epiregulin and the effect of its C-terminal domain for receptor binding affinity
Febs Lett., 553, 2003
3WV6
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BU of 3wv6 by Molmil
Crystal Structure of a protease-resistant mutant form of human galectin-9
分子名称: 1,2-ETHANEDIOL, Galectin-9, ZINC ION, ...
著者Yoshida, H, Kamitori, S.
登録日2014-05-16
公開日2015-05-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献X-ray structure of a protease-resistant mutant form of human galectin-9 having two carbohydrate recognition domains with a metal-binding site
Biochem.Biophys.Res.Commun., 490, 2017
5COK
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BU of 5cok by Molmil
X-ray crystal structure of wild type HIV-1 protease in complex with GRL-0476
分子名称: (3aS,4S,7aR)-hexahydro-4H-furo[2,3-b]pyran-4-yl [(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]carbamate, HIV-1 protease
著者Yedidi, R.S, Hayashi, H, Aoki, M, Das, D, Ghosh, A.K, Mitsuya, H.
登録日2015-07-20
公開日2016-01-13
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.801 Å)
主引用文献C-5-Modified Tetrahydropyrano-Tetrahydofuran-Derived Protease Inhibitors (PIs) Exert Potent Inhibition of the Replication of HIV-1 Variants Highly Resistant to Various PIs, including Darunavir.
J.Virol., 90, 2015
5COP
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BU of 5cop by Molmil
X-ray crystal structure of wild type HIV-1 protease in complex with GRL-097
分子名称: (3R,3aS,4S,7aS)-3-hydroxyhexahydro-4H-furo[2,3-b]pyran-4-yl [(2S,3R)-4-{[(4-aminophenyl)sulfonyl](2-methylpropyl)amino}-3-hydroxy-1-(4-methoxyphenyl)butan-2-yl]carbamate, HIV-1 protease
著者Yedidi, R.S, Hayashi, H, Aoki, M, Das, D, Ghosh, A.K, Mitsuya, H.
登録日2015-07-20
公開日2016-01-13
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献C-5-Modified Tetrahydropyrano-Tetrahydofuran-Derived Protease Inhibitors (PIs) Exert Potent Inhibition of the Replication of HIV-1 Variants Highly Resistant to Various PIs, including Darunavir.
J.Virol., 90, 2015
5CON
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BU of 5con by Molmil
X-ray crystal structure of wild type HIV-1 protease in complex with GRL-015
分子名称: (3R,3aS,4S,7aS)-3-hydroxyhexahydro-4H-furo[2,3-b]pyran-4-yl [(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]carbamate, HIV-1 protease
著者Yedidi, R.S, Hayashi, H, Aoki, M, Das, D, Ghosh, A.K, Mitsuya, H.
登録日2015-07-20
公開日2016-01-13
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献C-5-Modified Tetrahydropyrano-Tetrahydofuran-Derived Protease Inhibitors (PIs) Exert Potent Inhibition of the Replication of HIV-1 Variants Highly Resistant to Various PIs, including Darunavir.
J.Virol., 90, 2015
5COO
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BU of 5coo by Molmil
X-ray crystal structure of wild type HIV-1 protease in complex with GRL-085
分子名称: (3R,3aS,4S,7aS)-3-hydroxyhexahydro-4H-furo[2,3-b]pyran-4-yl [(2S,3R)-3-hydroxy-1-(4-methoxyphenyl)-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}butan-2-yl]carbamate, HIV-1 protease
著者Yedidi, R.S, Hayashi, H, Aoki, M, Das, D, Ghosh, A.K, Mitsuya, H.
登録日2015-07-20
公開日2016-01-13
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献C-5-Modified Tetrahydropyrano-Tetrahydofuran-Derived Protease Inhibitors (PIs) Exert Potent Inhibition of the Replication of HIV-1 Variants Highly Resistant to Various PIs, including Darunavir.
J.Virol., 90, 2015
2E7A
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BU of 2e7a by Molmil
TNF Receptor Subtype One-selective TNF Mutant with Antagonistic Activity
分子名称: Tumor necrosis factor
著者Mukai, Y, Yamagata, Y, Tsutsumi, Y.
登録日2007-01-09
公開日2007-11-13
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Creation and X-ray structure analysis of the tumor necrosis factor receptor-1-selective mutant of a tumor necrosis factor-alpha antagonist
J.Biol.Chem., 283, 2008
4EN6
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BU of 4en6 by Molmil
Crystal structure of HA70 (HA3) subcomponent of Clostridium botulinum type C progenitor toxin in complex with alpha 2-3-sialyllactose
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, Hemagglutinin components HA-22/23/53, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
著者Yamashita, S, Yoshida, H, Tonozuka, T, Nishikawa, A, Kamitori, S.
登録日2012-04-12
公開日2012-06-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.56 Å)
主引用文献Carbohydrate recognition mechanism of HA70 from Clostridium botulinum deduced from X-ray structures in complexes with sialylated oligosaccharides
Febs Lett., 586, 2012
4HL0
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BU of 4hl0 by Molmil
Crystal structure of full-length Toxascaris leonina galectin
分子名称: galectin
著者Jeong, M.S.
登録日2012-10-15
公開日2013-02-06
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of full-length Toxascaris leonina galectin with two carbohydrate-recognition domains.
Acta Crystallogr.,Sect.D, 69, 2013
4EN8
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BU of 4en8 by Molmil
Crystal structure of HA70 (HA3) subcomponent of Clostridium botulinum type C progenitor toxin in complex with alpha 2-6-sialyllactose
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, Hemagglutinin components HA-22/23/53, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
著者Yamashita, S, Yoshida, H, Tonozuka, T, Nishikawa, A, Kamitori, S.
登録日2012-04-12
公開日2012-06-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Carbohydrate recognition mechanism of HA70 from Clostridium botulinum deduced from X-ray structures in complexes with sialylated oligosaccharides
Febs Lett., 586, 2012
4EN9
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BU of 4en9 by Molmil
Crystal structure of HA70 (HA3) subcomponent of Clostridium botulinum type C progenitor toxin in complex with alpha 2-6-sialyllactosamine
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, Hemagglutinin components HA-22/23/53, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Yamashita, S, Yoshida, H, Tonozuka, T, Nishikawa, A, Kamitori, S.
登録日2012-04-12
公開日2012-06-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献Carbohydrate recognition mechanism of HA70 from Clostridium botulinum deduced from X-ray structures in complexes with sialylated oligosaccharides
Febs Lett., 586, 2012
4EN7
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BU of 4en7 by Molmil
Crystal structure of HA70 (HA3) subcomponent of Clostridium botulinum type C progenitor toxin in complex with alpha 2-3-sialyllactosamine
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, Hemagglutinin components HA-22/23/53, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Yamashita, S, Yoshida, H, Tonozuka, T, Nishikawa, A, Kamitori, S.
登録日2012-04-12
公開日2012-06-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.68 Å)
主引用文献Carbohydrate recognition mechanism of HA70 from Clostridium botulinum deduced from X-ray structures in complexes with sialylated oligosaccharides
Febs Lett., 586, 2012
1IRE
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BU of 1ire by Molmil
Crystal Structure of Co-type nitrile hydratase from Pseudonocardia thermophila
分子名称: COBALT (II) ION, Nitrile Hydratase
著者Miyanaga, A, Fushinobu, S, Ito, K, Wakagi, T.
登録日2001-10-01
公開日2002-10-01
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of cobalt-containing nitrile hydratase.
Biochem.Biophys.Res.Commun., 288, 2001
3A4D
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BU of 3a4d by Molmil
Crystal structure of Human Transthyretin (wild-type)
分子名称: GLYCEROL, SULFATE ION, Transthyretin
著者Miyata, M.
登録日2009-07-06
公開日2009-12-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Role of the Glutamic Acid 54 Residue in Transthyretin Stability and Thyroxine Binding
Biochemistry, 2009
3ACA
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BU of 3aca by Molmil
Crystal structure of human NUDT5 complexed with 8-oxo-dADP and manganese
分子名称: 8-oxo-7,8-dihydro-2'-deoxy-adenosine-5'-diphosphate, ADP-sugar pyrophosphatase, MANGANESE (II) ION
著者Arimori, T, Yamagata, Y.
登録日2009-12-30
公開日2011-01-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Diverse substrate recognition and hydrolysis mechanisms of human NUDT5
Nucleic Acids Res., 39, 2011
2ZJC
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BU of 2zjc by Molmil
TNFR1 selectve TNF mutant; R1-6
分子名称: GLYCEROL, Tumor necrosis factor
著者Mukai, Y, Yamagata, Y, Tsutsumi, Y.
登録日2008-03-05
公開日2009-01-20
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure-Function Relationship of Tumor Necrosis Factor (TNF) and Its Receptor Interaction Based on 3D Structural Analysis of a Fully Active TNFR1-Selective TNF Mutant
J.Mol.Biol., 385, 2009
3AC9
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BU of 3ac9 by Molmil
Crystal structure of human NUDT5 complexed with 8-oxo-dGDP and manganese
分子名称: 2'-deoxy-8-oxoguanosine 5'-(trihydrogen diphosphate), ADP-sugar pyrophosphatase, MANGANESE (II) ION
著者Arimori, T, Yamagata, Y.
登録日2009-12-30
公開日2011-01-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Diverse substrate recognition and hydrolysis mechanisms of human NUDT5
Nucleic Acids Res., 39, 2011

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