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3WC5
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BU of 3wc5 by Molmil
Carboxypeptidase B in complex with DD9
分子名称: (2R)-7-amino-2-(selanylmethyl)heptanoic acid, CACODYLATE ION, Carboxypeptidase B, ...
著者Yoshimoto, N, Itoh, T, Inaba, Y, Yamamoto, K.
登録日2013-05-24
公開日2013-10-02
最終更新日2022-08-24
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis for inhibition of carboxypeptidase B by selenium-containing inhibitor: selenium coordinates to zinc in enzyme.
J.Med.Chem., 56, 2013
3WC6
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BU of 3wc6 by Molmil
Carboxypeptidase B in complex with 2nd zinc
分子名称: ACETATE ION, Carboxypeptidase B, ZINC ION
著者Yoshimoto, N, Itoh, T, Inaba, Y, Yamamoto, K.
登録日2013-05-24
公開日2013-10-02
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural basis for inhibition of carboxypeptidase B by selenium-containing inhibitor: selenium coordinates to zinc in enzyme.
J.Med.Chem., 56, 2013
1NOL
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BU of 1nol by Molmil
OXYGENATED HEMOCYANIN (SUBUNIT TYPE II)
分子名称: CALCIUM ION, COPPER (II) ION, HEMOCYANIN (SUBUNIT TYPE II), ...
著者Hazes, B, Hol, W.G.J.
登録日1995-10-17
公開日1996-03-08
最終更新日2018-04-18
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of deoxygenated Limulus polyphemus subunit II hemocyanin at 2.18 A resolution: clues for a mechanism for allosteric regulation.
Protein Sci., 2, 1993
2P6L
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BU of 2p6l by Molmil
Crystal structure of PH0725 from Pyrococcus horikoshii OT3
分子名称: S-ADENOSYL-L-HOMOCYSTEINE, diphthine synthase
著者Yamamoto, H, Matsuura, Y, Ono, N, Shimada, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-19
公開日2007-09-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2P6I
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BU of 2p6i by Molmil
Crystal structure of PH0725 from Pyrococcus horikoshii OT3
分子名称: S-ADENOSYL-L-HOMOCYSTEINE, diphthine synthase
著者Yamamoto, H, Matsuura, Y, Morikawa, Y, Shimada, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-18
公開日2007-09-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
7DJI
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BU of 7dji by Molmil
Crystal structure of Lymnaea stagnalis Acetylcholine binding protein (AChBP) complexed with Paraherquamide A
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholine-binding protein, Paraherquamide A
著者Ihara, M, Matsuda, K.
登録日2020-11-20
公開日2021-11-24
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Determinants of subtype-selectivity of the anthelmintic paraherquamide A on Caenorhabditis elegans nicotinic acetylcholine receptors.
Mol.Pharmacol., 2023
7ED6
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BU of 7ed6 by Molmil
Crystal structure of Thermus thermophilus FakA ATP-binding domain
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Probable kinase
著者Nakatani, M, Nakahara, S, Fukui, K, Murakawa, T, Masui, R.
登録日2021-03-15
公開日2022-03-16
最終更新日2023-01-11
実験手法X-RAY DIFFRACTION (1.92850327 Å)
主引用文献Crystal structure of a nucleotide-binding domain of fatty acid kinase FakA from Thermus thermophilus HB8.
J.Struct.Biol., 214, 2022
7ED9
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BU of 7ed9 by Molmil
Crystal structure of selenomethionine-labeled Thermus thermophilus FakA ATP-binding domain
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Probable kinase
著者Nakatani, M, Nakahara, S, Fukui, K, Murakawa, T, Masui, R.
登録日2021-03-15
公開日2022-03-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.01764154 Å)
主引用文献Crystal structure of a nucleotide-binding domain of fatty acid kinase FakA from Thermus thermophilus HB8.
J.Struct.Biol., 214, 2022
3WI9
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BU of 3wi9 by Molmil
Crystal structure of copper nitrite reductase from Geobacillus kaustophilus
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, COPPER (II) ION, ...
著者Fukuda, Y, Nojiri, M.
登録日2013-09-09
公開日2014-07-23
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structural and functional characterization of the Geobacillus copper nitrite reductase: involvement of the unique N-terminal region in the interprotein electron transfer with its redox partner
Biochim.Biophys.Acta, 1837, 2014
7F8K
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BU of 7f8k by Molmil
Room temperature structure of bacterial copper amine oxidase determined by serial femtosecond crystallography
分子名称: COPPER (II) ION, Phenylethylamine oxidase
著者Murakawa, T, Okajima, T.
登録日2021-07-02
公開日2021-09-08
最終更新日2021-10-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Microcrystal preparation for serial femtosecond X-ray crystallography of bacterial copper amine oxidase
Acta Crystallogr.,Sect.F, 77, 2021
7WKZ
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BU of 7wkz by Molmil
Crystal structure of the HSA complex with mycophenolate and aripiprazole
分子名称: 7-[4-[4-[2,3-bis(chloranyl)phenyl]piperazin-1-yl]butoxy]-3,4-dihydro-1H-quinolin-2-one, MYCOPHENOLIC ACID, Serum albumin
著者Kawai, A, Yamasaki, K.
登録日2022-01-12
公開日2022-12-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.992 Å)
主引用文献Structural Basis of the Change in the Interaction Between Mycophenolic Acid and Subdomain IIA of Human Serum Albumin During Renal Failure.
J.Med.Chem., 66, 2023
7EXY
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BU of 7exy by Molmil
T-hairpin structure found in the RNA element involved in the piRNA biogenesis
分子名称: RNA (5'-R(*UP*UP*GP*GP*UP*UP*UP*GP*AP*UP*UP*CP*CP*AP*AP*G)-3')
著者Takase, N, Kawai, G.
登録日2021-05-29
公開日2022-03-02
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献T-hairpin structure found in the RNA element involved in piRNA biogenesis.
Rna, 28, 2022
7WWY
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BU of 7wwy by Molmil
M117L variant of Cu/Zn-superoxide dismutase from dog (Canis familiaris)
分子名称: COPPER (II) ION, Superoxide dismutase [Cu-Zn], ZINC ION
著者Narikiyo, S, Furukawa, Y, Akutsu, M.
登録日2022-02-14
公開日2023-02-15
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Intrinsic structural vulnerability in the hydrophobic core induces species-specific aggregation of canine SOD1 with degenerative myelopathy-linked E40K mutation.
J.Biol.Chem., 299, 2023
7WWT
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BU of 7wwt by Molmil
Cu/Zn-superoxide dismutase from dog (Canis familiaris)
分子名称: COPPER (II) ION, Superoxide dismutase [Cu-Zn], ZINC ION
著者Narikiyo, S, Furukawa, Y, Akutsu, M.
登録日2022-02-14
公開日2023-02-15
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Intrinsic structural vulnerability in the hydrophobic core induces species-specific aggregation of canine SOD1 with degenerative myelopathy-linked E40K mutation.
J.Biol.Chem., 299, 2023
7WX0
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BU of 7wx0 by Molmil
E40K variant of Cu/Zn-superoxide dismutase from dog (Canis familiaris)
分子名称: COPPER (II) ION, Superoxide dismutase [Cu-Zn], ZINC ION
著者Narikiyo, S, Furukawa, Y, Akutsu, M.
登録日2022-02-14
公開日2023-02-15
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Intrinsic structural vulnerability in the hydrophobic core induces species-specific aggregation of canine SOD1 with degenerative myelopathy-linked E40K mutation.
J.Biol.Chem., 299, 2023
7WX1
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BU of 7wx1 by Molmil
E40K/M117L variant of Cu/Zn-superoxide dismutase from dog (Canis familiaris)
分子名称: COPPER (II) ION, Superoxide dismutase [Cu-Zn], ZINC ION
著者Narikiyo, S, Furukawa, Y, Akutsu, M.
登録日2022-02-14
公開日2023-02-15
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Intrinsic structural vulnerability in the hydrophobic core induces species-specific aggregation of canine SOD1 with degenerative myelopathy-linked E40K mutation.
J.Biol.Chem., 299, 2023
7LDG
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BU of 7ldg by Molmil
Crystal structure of the MEILB2-BRCA2 complex
分子名称: Breast cancer type 2 susceptibility protein, Heat shock factor 2-binding protein
著者Nandakumar, J, Pendlebury, D.F.
登録日2021-01-13
公開日2021-08-11
最終更新日2021-08-25
実験手法X-RAY DIFFRACTION (2.56 Å)
主引用文献Structure of a meiosis-specific complex central to BRCA2 localization at recombination sites.
Nat.Struct.Mol.Biol., 28, 2021
1QNF
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BU of 1qnf by Molmil
STRUCTURE OF PHOTOLYASE
分子名称: 8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE, FLAVIN-ADENINE DINUCLEOTIDE, PHOTOLYASE
著者Miki, K, Kitadokoro, K.
登録日1997-07-04
公開日1998-01-14
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of DNA photolyase from Anacystis nidulans
Nat.Struct.Biol., 4, 1997
3WIA
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BU of 3wia by Molmil
Crystal structure of the N-terminal 1-37 residues deleted mutant of Geobacillus copper nitrite reductase
分子名称: COPPER (II) ION, FORMIC ACID, Nitrite reductase
著者Fukuda, Y, Nojiri, M.
登録日2013-09-09
公開日2014-07-23
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Structural and functional characterization of the Geobacillus copper nitrite reductase: involvement of the unique N-terminal region in the interprotein electron transfer with its redox partner
Biochim.Biophys.Acta, 1837, 2014
7CJS
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BU of 7cjs by Molmil
structure of aquaporin
分子名称: Aquaporin NIP2-1, CHOLESTEROL HEMISUCCINATE, SODIUM ION, ...
著者Saitoh, Y, Ma, J.F, Suga, M.
登録日2020-07-13
公開日2021-11-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis for high selectivity of a rice silicon channel Lsi1.
Nat Commun, 12, 2021
2DW2
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BU of 2dw2 by Molmil
Crystal structure of VAP2 from Crotalus atrox venom (Form 2-5 crystal)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)][2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Catrocollastatin, ...
著者Takeda, S, Igarashi, T, Araki, S.
登録日2006-08-02
公開日2007-07-10
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structures of catrocollastatin/VAP2B reveal a dynamic, modular architecture of ADAM/adamalysin/reprolysin family proteins
Febs Lett., 581, 2007
2DW0
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BU of 2dw0 by Molmil
Crystal structure of VAP2 from Crotalus atrox venom (Form 2-1 crystal)
分子名称: 3-(N-HYDROXYCARBOXAMIDO)-2-ISOBUTYLPROPANOYL-TRP-METHYLAMIDE, CALCIUM ION, Catrocollastatin, ...
著者Takeda, S, Igarashi, T, Araki, S.
登録日2006-08-02
公開日2007-07-10
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal structures of catrocollastatin/VAP2B reveal a dynamic, modular architecture of ADAM/adamalysin/reprolysin family proteins
Febs Lett., 581, 2007
2DW1
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BU of 2dw1 by Molmil
Crystal structure of VAP2 from Crotalus atrox venom (Form 2-2 crystal)
分子名称: 3-(N-HYDROXYCARBOXAMIDO)-2-ISOBUTYLPROPANOYL-TRP-METHYLAMIDE, CALCIUM ION, Catrocollastatin, ...
著者Takeda, S, Igarashi, T, Araki, S.
登録日2006-08-02
公開日2007-07-10
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structures of catrocollastatin/VAP2B reveal a dynamic, modular architecture of ADAM/adamalysin/reprolysin family proteins
Febs Lett., 581, 2007
5XA4
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BU of 5xa4 by Molmil
Crystal Structure of HasAp with Fe-5,15-Diazaporphyrin
分子名称: 10,20-Diphenyl-5,15-diaza-porphyrin containing FE, Heme acquisition protein HasAp
著者Shoji, O, Uehara, H, Sugimoto, H, Shiro, Y, Watanabe, Y.
登録日2017-03-10
公開日2017-12-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structures of the Heme Acquisition Protein HasA with Iron(III)-5,15-Diphenylporphyrin and Derivatives Thereof as an Artificial Prosthetic Group
Angew. Chem. Int. Ed. Engl., 56, 2017
5XIC
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BU of 5xic by Molmil
Crystal Structure of HasAp with Fe-5,10,15-triphenylporphyrin
分子名称: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, 5,10,15-Triphenylporphyrin cpntaining FE, Heme acquisition protein HasAp
著者Shoji, O, Uehara, H, Sugimoto, H, Shiro, Y, Watanabe, Y.
登録日2017-04-26
公開日2017-12-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Structures of the Heme Acquisition Protein HasA with Iron(III)-5,15-Diphenylporphyrin and Derivatives Thereof as an Artificial Prosthetic Group
Angew. Chem. Int. Ed. Engl., 56, 2017

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