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8II1
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BU of 8ii1 by Molmil
Crystal structure of V30M-TTR in complex with BID
分子名称: Benziodarone, Transthyretin
著者Yokoyama, T.
登録日2023-02-24
公開日2023-06-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.907 Å)
主引用文献Benziodarone and 6-hydroxybenziodarone are potent and selective inhibitors of transthyretin amyloidogenesis.
Bioorg.Med.Chem., 90, 2023
8II3
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BU of 8ii3 by Molmil
Crystal structure of V30M-TTR in complex with 6-hydroxy BID
分子名称: Transthyretin, [3,5-bis(iodanyl)-4-oxidanyl-phenyl]-(2-ethyl-6-oxidanyl-1-benzofuran-3-yl)methanone
著者Yokoyama, T.
登録日2023-02-24
公開日2023-06-28
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.399 Å)
主引用文献Benziodarone and 6-hydroxybenziodarone are potent and selective inhibitors of transthyretin amyloidogenesis.
Bioorg.Med.Chem., 90, 2023
8II4
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BU of 8ii4 by Molmil
Crystal structure of V30M-TTR in complex with 6-hydroxy BBM
分子名称: Transthyretin, [3,5-bis(bromanyl)-4-oxidanyl-phenyl]-(2-ethyl-6-oxidanyl-1-benzofuran-3-yl)methanone
著者Yokoyama, T.
登録日2023-02-24
公開日2023-06-28
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.499 Å)
主引用文献Benziodarone and 6-hydroxybenziodarone are potent and selective inhibitors of transthyretin amyloidogenesis.
Bioorg.Med.Chem., 90, 2023
8II2
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BU of 8ii2 by Molmil
Crystal structure of V30M-TTR in complex with BBM
分子名称: CALCIUM ION, Transthyretin, [3,5-bis(bromanyl)-4-oxidanyl-phenyl]-(2-ethyl-1-benzofuran-3-yl)methanone
著者Yokoyama, T.
登録日2023-02-24
公開日2023-06-28
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.798 Å)
主引用文献Benziodarone and 6-hydroxybenziodarone are potent and selective inhibitors of transthyretin amyloidogenesis.
Bioorg.Med.Chem., 90, 2023
7CPJ
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BU of 7cpj by Molmil
ycbZ-stalled 70S ribosome
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Yokoyama, T, Shirouzu, M, Ito, T.
登録日2020-08-07
公開日2021-12-08
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献The landscape of translational stall sites in bacteria revealed by monosome and disome profiling.
Rna, 28, 2022
6KGB
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BU of 6kgb by Molmil
Crystal structure of E61K mutated transthyretin
分子名称: CALCIUM ION, Transthyretin
著者Yokoyama, T, Mizuguchi, M.
登録日2019-07-11
公開日2020-07-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献A low amyloidogenic E61K transthyretin mutation may cause familial amyloid polyneuropathy.
J.Neurochem., 156, 2021
7FH2
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BU of 7fh2 by Molmil
Crystal structure of the first bromodomain of BRD4 in complex with 16D10
分子名称: Bromodomain-containing protein 4, CHLORIDE ION, N-[2-[2-[(E)-3-(2,5-dimethoxyphenyl)prop-2-enoyl]-4,5-dimethoxy-phenyl]ethyl]ethanamide
著者Yokoyama, T, Hirasawa, N.
登録日2021-07-29
公開日2022-08-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.492 Å)
主引用文献A chalcone derivative suppresses TSLP induction in mice and human keratinocytes through binding to BET family proteins.
Biochem Pharmacol, 194, 2021
2ODL
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BU of 2odl by Molmil
Crystal structure of the HMW1 secretion domain from Haemophilus influenzae
分子名称: Adhesin
著者Yokoyama, T, Yeo, H.J.
登録日2006-12-22
公開日2007-08-21
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献The structure of the Haemophilus influenzae HMW1 pro-piece reveals a structural domain essential for bacterial two-partner secretion.
J.Biol.Chem., 282, 2007
3D6X
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BU of 3d6x by Molmil
Crystal structure of Campylobacter jejuni FabZ
分子名称: (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase
著者Yokoyama, T, Yeo, H.J.
登録日2008-05-20
公開日2009-05-05
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.59 Å)
主引用文献Campylobacter jejuni fatty acid synthase II: structural and functional analysis of beta-hydroxyacyl-ACP dehydratase (FabZ).
Biochem.Biophys.Res.Commun., 380, 2009
3VH6
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BU of 3vh6 by Molmil
Crystal structure of the chicken CENP-T histone fold/CENP-W/CENP-S/CENP-X heterotetrameric complex, crystal form II
分子名称: CENP-S, CENP-T, CENP-W, ...
著者Nishino, T, Takeuchi, K, Gascoigne, K.E, Suzuki, A, Hori, T, Oyama, T, Morikawa, K, Cheeseman, I.M, Fukagawa, T.
登録日2011-08-23
公開日2012-03-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.351 Å)
主引用文献CENP-T-W-S-X Forms a Unique Centromeric Chromatin Structure with a Histone-like Fold
Cell(Cambridge,Mass.), 148, 2012
3VH5
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BU of 3vh5 by Molmil
Crystal structure of the chicken CENP-T histone fold/CENP-W/CENP-S/CENP-X heterotetrameric complex, crystal form I
分子名称: CENP-S, CENP-T, CENP-W, ...
著者Nishino, T, Takeuchi, K, Gascoigne, K.E, Suzuki, A, Hori, T, Oyama, T, Morikawa, K, Cheeseman, I.M, Fukagawa, T.
登録日2011-08-23
公開日2012-03-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.402 Å)
主引用文献CENP-T-W-S-X Forms a Unique Centromeric Chromatin Structure with a Histone-like Fold
Cell(Cambridge,Mass.), 148, 2012
6L37
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BU of 6l37 by Molmil
X-ray structure of human PPARalpha ligand binding domain-GW9662-ciprofibrate co-crystals obtained by delipidation and co-crystallization
分子名称: 2-chloro-5-nitro-N-phenylbenzamide, 2-{4-[(1S)-2,2-dichlorocyclopropyl]phenoxy}-2-methylpropanoic acid, Peroxisome proliferator-activated receptor alpha
著者Kamata, S, Saito, K, Honda, A, Ishikawa, R, Oyama, T, Ishii, I.
登録日2019-10-09
公開日2020-11-11
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.91 Å)
主引用文献PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates.
Iscience, 23, 2020
6L36
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BU of 6l36 by Molmil
X-ray structure of human PPARalpha ligand binding domain-GW9662-fenofibric acid co-crystals obtained by delipidation and co-crystallization
分子名称: 2-[4-(4-chlorobenzene-1-carbonyl)phenoxy]-2-methylpropanoic acid, 2-chloro-5-nitro-N-phenylbenzamide, Peroxisome proliferator-activated receptor alpha
著者Kamata, S, Saito, K, Honda, A, Ishikawa, R, Oyama, T, Ishii, I.
登録日2019-10-09
公開日2020-11-11
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.301 Å)
主引用文献PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates.
Iscience, 23, 2020
6L38
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BU of 6l38 by Molmil
X-ray structure of human PPARalpha ligand binding domain-GW9662-gemfibrozil co-crystals obtained by delipidation and co-crystallization
分子名称: 2-chloro-5-nitro-N-phenylbenzamide, Peroxisome proliferator-activated receptor alpha
著者Kamata, S, Saito, K, Honda, A, Ishikawa, R, Oyama, T, Ishii, I.
登録日2019-10-09
公開日2020-11-11
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.761 Å)
主引用文献PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates.
Iscience, 23, 2020
6LX4
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BU of 6lx4 by Molmil
X-ray structure of human PPARalpha ligand binding domain-fenofibric acid co-crystals obtained by delipidation and co-crystallization
分子名称: 2-[4-(4-chlorobenzene-1-carbonyl)phenoxy]-2-methylpropanoic acid, Peroxisome proliferator-activated receptor alpha
著者Kamata, S, Saito, K, Honda, A, Ishikawa, R, Oyama, T, Ishii, I.
登録日2020-02-10
公開日2020-11-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.13 Å)
主引用文献PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates.
Iscience, 23, 2020
6LX9
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BU of 6lx9 by Molmil
X-ray structure of human PPARalpha ligand binding domain-arachidonic acid co-crystals obtained by delipidation and cross-seeding
分子名称: ARACHIDONIC ACID, GLYCEROL, Peroxisome proliferator-activated receptor alpha
著者Kamata, S, Saito, K, Honda, A, Ishikawa, R, Oyama, T, Ishii, I.
登録日2020-02-10
公開日2020-11-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates.
Iscience, 23, 2020
6LX5
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BU of 6lx5 by Molmil
X-ray structure of human PPARalpha ligand binding domain-ciprofibrate co-crystals obtained by delipidation and co-crystallization
分子名称: 2-{4-[(1S)-2,2-dichlorocyclopropyl]phenoxy}-2-methylpropanoic acid, GLYCEROL, Peroxisome proliferator-activated receptor alpha
著者Kamata, S, Saito, K, Honda, A, Ishikawa, R, Oyama, T, Ishii, I.
登録日2020-02-10
公開日2020-11-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates.
Iscience, 23, 2020
6LX6
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BU of 6lx6 by Molmil
X-ray structure of human PPARalpha ligand binding domain-palmitic acid co-crystals obtained by delipidation and cross-seeding
分子名称: GLYCEROL, PALMITIC ACID, Peroxisome proliferator-activated receptor alpha
著者Kamata, S, Saito, K, Honda, A, Ishikawa, R, Oyama, T, Ishii, I.
登録日2020-02-10
公開日2020-11-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates.
Iscience, 23, 2020
6LXB
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BU of 6lxb by Molmil
X-ray structure of human PPARalpha ligand binding domain-saroglitazar co-crystals obtained by soaking
分子名称: (2S)-2-ethoxy-3-[4-[2-[2-methyl-5-(4-methylsulfanylphenyl)pyrrol-1-yl]ethoxy]phenyl]propanoic acid, Peroxisome proliferator-activated receptor alpha
著者Kamata, S, Honda, A, Ishikawa, R, Akahane, M, Oyama, T, Ishii, I.
登録日2020-02-10
公開日2020-11-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.36 Å)
主引用文献PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates.
Iscience, 23, 2020
6LXA
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BU of 6lxa by Molmil
X-ray structure of human PPARalpha ligand binding domain-eicosapentaenoic acid (EPA) co-crystals obtained by delipidation and cross-seeding
分子名称: 5,8,11,14,17-EICOSAPENTAENOIC ACID, GLYCEROL, Peroxisome proliferator-activated receptor alpha
著者Kamata, S, Saito, K, Honda, A, Ishikawa, R, Oyama, T, Ishii, I.
登録日2020-02-10
公開日2020-11-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.23 Å)
主引用文献PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates.
Iscience, 23, 2020
3VKH
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BU of 3vkh by Molmil
X-ray structure of a functional full-length dynein motor domain
分子名称: ADENOSINE-5'-DIPHOSPHATE, Dynein heavy chain, cytoplasmic
著者Kon, T, Oyama, T, Shimo-Kon, R, Suto, K, Kurisu, G.
登録日2011-11-16
公開日2012-03-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.8 Å)
主引用文献The 2.8 A crystal structure of the dynein motor domain
Nature, 484, 2012
3VKG
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BU of 3vkg by Molmil
X-ray structure of an MTBD truncation mutant of dynein motor domain
分子名称: ADENOSINE-5'-DIPHOSPHATE, Dynein heavy chain, cytoplasmic, ...
著者Kon, T, Oyama, T, Shimo-Kon, R, Suto, K, Kurisu, G.
登録日2011-11-16
公開日2012-03-14
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.81 Å)
主引用文献The 2.8 A crystal structure of the dynein motor domain
Nature, 484, 2012
6LX8
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BU of 6lx8 by Molmil
X-ray structure of human PPARalpha ligand binding domain-oleic acid co-crystals obtained by delipidation and cross-seeding
分子名称: GLYCEROL, OLEIC ACID, Peroxisome proliferator-activated receptor alpha
著者Kamata, S, Saito, K, Honda, A, Ishikawa, R, Oyama, T, Ishii, I.
登録日2020-02-10
公開日2020-11-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates.
Iscience, 23, 2020
6LX7
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BU of 6lx7 by Molmil
X-ray structure of human PPARalpha ligand binding domain-stearic acid co-crystals obtained by delipidation and cross-seeding
分子名称: GLYCEROL, Peroxisome proliferator-activated receptor alpha, STEARIC ACID
著者Kamata, S, Saito, K, Honda, A, Ishikawa, R, Oyama, T, Ishii, I.
登録日2020-02-10
公開日2020-11-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.41 Å)
主引用文献PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates.
Iscience, 23, 2020
6LXC
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BU of 6lxc by Molmil
X-ray structure of human PPARalpha ligand binding domain-saroglitazar co-crystals obtained by delipidation and cross-seeding
分子名称: (2S)-2-ethoxy-3-[4-[2-[2-methyl-5-(4-methylsulfanylphenyl)pyrrol-1-yl]ethoxy]phenyl]propanoic acid, Peroxisome proliferator-activated receptor alpha
著者Kamata, S, Honda, A, Ishikawa, R, Akahane, M, Oyama, T, Ishii, I.
登録日2020-02-10
公開日2020-11-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates.
Iscience, 23, 2020

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