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3AH3
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BU of 3ah3 by Molmil
Crystal structure of LR5-1, 3-isopropylmalate dehydrogenase created by directed evolution
分子名称: 1,2-ETHANEDIOL, Homoisocitrate dehydrogenase, SULFATE ION
著者Tomita, T, Suzuki, Y, Kuzuyama, T, Nishiyama, M.
登録日2010-04-13
公開日2011-02-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Enhancement of the latent 3-isopropylmalate dehydrogenase activity of promiscuous homoisocitrate dehydrogenase by directed evolution
Biochem.J., 431, 2010
3AU9
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BU of 3au9 by Molmil
Crystal structure of the quaternary complex-1 of an isomerase
分子名称: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, 3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID, CALCIUM ION, ...
著者Umeda, T, Tanaka, N, Kusakabe, Y, Nakanishi, M, Kitade, Y, Nakamura, K.T.
登録日2011-02-01
公開日2011-08-10
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Molecular basis of fosmidomycin's action on the human malaria parasite Plasmodium falciparum
Sci Rep, 1, 2011
3AWI
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BU of 3awi by Molmil
Bifunctional tRNA modification enzyme MnmC from Escherichia coli
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION, tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC
著者Kitamura, A, Sengoku, T, Nishimoto, M, Yokoyama, S, Bessho, Y.
登録日2011-03-23
公開日2011-06-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structure of the bifunctional tRNA modification enzyme MnmC from Escherichia coli
Protein Sci., 2011
1WZE
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BU of 1wze by Molmil
Structural basis for alteration of cofactor specificity of Malate dehydrogenase from Thermus flavus
分子名称: Malate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Tomita, T, Fushinobu, S, Kuzuyama, T, Nishiyama, M.
登録日2005-03-04
公開日2006-03-14
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis for alteration of cofactor specificity of malate dehydrogenase from Thermus flavus
to be published
4YB4
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BU of 4yb4 by Molmil
Crystal structure of homoisocitrate dehydrogenase from Thermus thermophilus in complex with homoisocitrate, magnesium ion (II) and NADH
分子名称: (1R,2S)-1-hydroxybutane-1,2,4-tricarboxylic acid, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, GLYCEROL, ...
著者Takahashi, K, Tomita, T, Kuzuyama, T, Nishiyama, M.
登録日2015-02-18
公開日2016-03-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure of homoisocitrate dehydrogenase from Thermus thermophilus in complex with homoisocitrate, magnesium(II) and NADH
To Be Published
1WZI
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BU of 1wzi by Molmil
Structural basis for alteration of cofactor specificity of Malate dehydrogenase from Thermus flavus
分子名称: Malate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Tomita, T, Fushinobu, S, Kuzuyama, T, Nishiyama, M.
登録日2005-03-05
公開日2006-03-14
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis for alteration of cofactor specificity of malate dehydrogenase from Thermus flavus
to be published
3AUA
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BU of 3aua by Molmil
Crystal structure of the quaternary complex-2 of an isomerase
分子名称: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, 3-[ethanoyl(hydroxy)amino]propylphosphonic acid, CALCIUM ION, ...
著者Umeda, T, Tanaka, N, Kusakabe, Y, Nakanishi, M, Kitade, Y, Nakamura, K.T.
登録日2011-02-01
公開日2011-08-10
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Molecular basis of fosmidomycin's action on the human malaria parasite Plasmodium falciparum
Sci Rep, 1, 2011
3AU8
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BU of 3au8 by Molmil
Crystal structure of the ternary complex of an isomerase
分子名称: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, MANGANESE (II) ION, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Umeda, T, Tanaka, N, Kusakabe, Y, Nakanishi, M, Kitade, Y, Nakamura, K.T.
登録日2011-02-01
公開日2011-08-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Molecular basis of fosmidomycin's action on the human malaria parasite Plasmodium falciparum
Sci Rep, 1, 2011
5B1Q
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BU of 5b1q by Molmil
Human herpesvirus 6B tegument protein U14
分子名称: GLYCEROL, U14 protein
著者Wang, B, Nishimura, M, Tang, H, Kawabata, A, Mahmoud, N.F, Khanlari, Z, Hamada, D, Tsuruta, H, Mori, Y.
登録日2015-12-11
公開日2016-04-20
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal Structure of Human Herpesvirus 6B Tegument Protein U14.
Plos Pathog., 12, 2016
3AOE
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BU of 3aoe by Molmil
Crystal structure of hetero-hexameric glutamate dehydrogenase from Thermus thermophilus (Leu bound form)
分子名称: Glutamate dehydrogenase, LEUCINE
著者Tomita, T, Kuzuyama, T, Nishiyama, M.
登録日2010-09-27
公開日2011-09-07
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献An unique allosteric regulation revealed by hetero-hexameric glutamate dehydrogenase from Thermus thermophilus
To be Published
1Y7T
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BU of 1y7t by Molmil
Crystal structure of NAD(H)-depenent malate dehydrogenase complexed with NADPH
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Malate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Tomita, T, Fushinobu, S, Kuzuyama, T, Nishiyama, M.
登録日2004-12-10
公開日2005-08-02
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of NAD-dependent malate dehydrogenase complexed with NADP(H)
Biochem.Biophys.Res.Commun., 334, 2005
3WWN
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BU of 3wwn by Molmil
Crystal structure of LysZ from Thermus thermophilus complex with LysW
分子名称: OrfF, Putative acetylglutamate kinase-like protein, SULFATE ION, ...
著者Yoshida, A, Tomita, T, Kuzuyama, T, Nishiyama, M.
登録日2014-06-21
公開日2014-11-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural insight into amino group-carrier protein-mediated lysine biosynthesis: crystal structure of the LysZ·LysW complex from Thermus thermophilus.
J.Biol.Chem., 290, 2015
3WWM
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BU of 3wwm by Molmil
Crystal structure of LysZ from Thermus thermophilus with ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, Putative acetylglutamate kinase-like protein
著者Yoshida, A, Tomita, T, Kuzuyama, T, Nishiyama, M.
登録日2014-06-21
公開日2014-11-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural insight into amino group-carrier protein-mediated lysine biosynthesis: crystal structure of the LysZ·LysW complex from Thermus thermophilus.
J.Biol.Chem., 290, 2015
3WWL
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BU of 3wwl by Molmil
Crystal structure of lysine biosynthetic amino acid carrier protein LysW from Thermus thermophilus conjugated with alpha-aminoadipate
分子名称: Alpha-aminoadipate carrier protein LysW, ZINC ION
著者Yoshida, A, Tomita, T, Kuzuyama, T, Nishiyama, M.
登録日2014-06-21
公開日2014-11-19
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Structural insight into amino group-carrier protein-mediated lysine biosynthesis: crystal structure of the LysZ·LysW complex from Thermus thermophilus.
J.Biol.Chem., 290, 2015
1JQD
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BU of 1jqd by Molmil
Crystal Structure Analysis of Human Histamine Methyltransferase (Thr105 Polymorphic Variant) Complexed with AdoHcy and Histamine
分子名称: HISTAMINE, Histamine N-Methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
著者Horton, J.R, Sawada, K, Nishibori, M, Zhang, X, Cheng, X.
登録日2001-08-06
公開日2002-08-06
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献Two polymorphic forms of human histamine methyltransferase: structural, thermal, and kinetic comparisons.
Structure, 9, 2001
1UC4
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BU of 1uc4 by Molmil
Structure of diol dehydratase complexed with (S)-1,2-propanediol
分子名称: AMMONIUM ION, CYANOCOBALAMIN, POTASSIUM ION, ...
著者Shibata, N, Nakanishi, Y, Fukuoka, M, Yamanishi, M, Yasuoka, N, Toraya, T.
登録日2003-04-08
公開日2003-07-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural rationalization for the lack of stereospecificity in coenzyme B12-dependent diol dehydratase
J.BIOL.CHEM., 278, 2003
3VOR
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BU of 3vor by Molmil
Crystal Structure Analysis of the CofA
分子名称: CFA/III pilin
著者Fukakusa, S, Kawahara, K, Nakamura, S, Iwasita, T, Baba, S, Nishimura, M, Kobayashi, Y, Honda, T, Iida, T, Taniguchi, T, Ohkubo, T.
登録日2012-02-06
公開日2012-09-26
最終更新日2013-07-31
実験手法X-RAY DIFFRACTION (0.9 Å)
主引用文献Structure of the CFA/III major pilin subunit CofA from human enterotoxigenic Escherichia coli determined at 0.90 A resolution by sulfur-SAD phasing
Acta Crystallogr.,Sect.D, 68, 2012
2DT9
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BU of 2dt9 by Molmil
Crystal structure of the regulatory subunit of aspartate kinase from Thermus flavus
分子名称: ACETATE ION, Aspartokinase, THREONINE
著者Yoshida, A, Tomita, T, Fushinobu, S, Kuzuyama, T, Nishiyama, M.
登録日2006-07-11
公開日2007-07-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal structures of the regulatory subunit of Thr-sensitive aspartate kinase from Thermus thermophilus
Febs J., 276, 2009
2YR2
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BU of 2yr2 by Molmil
Crystal Structure of the Hypothetical regulator from Sulfolobus tokodaii
分子名称: 146aa long hypothetical transcriptional regulator, ZINC ION
著者Kumarevel, T.S, Tanaka, T, Nishio, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-02
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Crystal Structure of the Hypothetical regulator from Sulfolobus tokodaii
To be Published
2Z9Z
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BU of 2z9z by Molmil
Crystal structure of CERT START domain(N504A mutant), in complex with C10-diacylglycerol
分子名称: (2S)-3-hydroxypropane-1,2-diyl didecanoate, Lipid-transfer protein CERT
著者Kudo, N, Kumagai, K, Wakatsuki, S, Nishijima, M, Hanada, K, Kato, R.
登録日2007-09-26
公開日2008-02-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Structural basis for specific lipid recognition by CERT responsible for nonvesicular trafficking of ceramide.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2ZTJ
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BU of 2ztj by Molmil
Crystal structure of homocitrate synthase from Thermus thermophilus complexed with alpha-ketoglutarate
分子名称: 2-OXOGLUTARIC ACID, COPPER (II) ION, Homocitrate synthase
著者Okada, T, Tomita, T, Kuzuyama, T, Nishiyama, M.
登録日2008-10-06
公開日2009-10-13
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from Thermus thermophilus
J.Biol.Chem., 285, 2010
2ZTK
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BU of 2ztk by Molmil
Crystal structure of homocitrate synthase from Thermus thermophilus complexed with homocitrate
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, COPPER (II) ION, Homocitrate synthase
著者Okada, T, Tomita, T, Kuzuyama, T, Nishiyama, M.
登録日2008-10-06
公開日2009-10-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from Thermus thermophilus
J.Biol.Chem., 285, 2010
2Z9Y
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BU of 2z9y by Molmil
Crystal structure of CERT START domain in complex with C10-diacylglycerol
分子名称: (2S)-3-hydroxypropane-1,2-diyl didecanoate, Lipid-transfer protein CERT
著者Kudo, N, Kumagai, K, Wakatsuki, S, Nishijima, M, Hanada, K, Kato, R.
登録日2007-09-26
公開日2008-02-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis for specific lipid recognition by CERT responsible for nonvesicular trafficking of ceramide.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2ZYF
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BU of 2zyf by Molmil
Crystal structure of homocitrate synthase from Thermus thermophilus complexed with magnesuim ion and alpha-ketoglutarate
分子名称: 2-OXOGLUTARIC ACID, Homocitrate synthase, MAGNESIUM ION
著者Okada, T, Tomita, T, Kuzuyama, T, Nishiyama, M.
登録日2009-01-20
公開日2009-12-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from thermus thermophilus
J.Biol.Chem., 2009
2ZYJ
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BU of 2zyj by Molmil
Crystal structure of LysN, alpha-aminoadipate aminotransferase (complexed with N-(5'-phosphopyridoxyl)-L-glutamate), from Thermus thermophilus HB27
分子名称: Alpha-aminodipate aminotransferase, N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-glutamic acid
著者Ouchi, T, Tomita, T, Kuzuyama, T, Nishiyama, M.
登録日2009-01-26
公開日2009-09-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献Dual roles of a conserved pair, Arg23 and Ser20, in recognition of multiple substrates in alpha-aminoadipate aminotransferase from Thermus thermophilus.
Biochem.Biophys.Res.Commun., 388, 2009

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