3A1Q
| Crystal structure of the mouse RAP80 UIMs in complex with Lys63-linked di-ubiquitin | 分子名称: | Ubiquitin, Ubiquitin interaction motif-containing protein 1 | 著者 | Sato, Y, Yoshikawa, A, Mimura, H, Yamashita, M, Yamagata, A, Fukai, S. | 登録日 | 2009-04-21 | 公開日 | 2009-07-21 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by tandem UIMs of RAP80 Embo J., 28, 2009
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3B0A
| Crystal structure of the mouse HOIL1-L-NZF in complex with linear di-ubiquitin | 分子名称: | Polyubiquitin-C, RanBP-type and C3HC4-type zinc finger-containing protein 1, TRIS(HYDROXYETHYL)AMINOMETHANE, ... | 著者 | Sato, Y, Fujita, H, Yoshikawa, A, Yamashita, M, Yamagata, A, Kaiser, S.E, Iwai, K, Fukai, S. | 登録日 | 2011-06-07 | 公開日 | 2011-12-14 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Specific recognition of linear ubiquitin chains by the Npl4 zinc finger (NZF) domain of the HOIL-1L subunit of the linear ubiquitin chain assembly complex Proc.Natl.Acad.Sci.USA, 108, 2011
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3B08
| Crystal structure of the mouse HOIL1-L-NZF in complex with linear di-ubiquitin | 分子名称: | Polyubiquitin-C, RanBP-type and C3HC4-type zinc finger-containing protein 1, ZINC ION, ... | 著者 | Sato, Y, Fujita, H, Yoshikawa, A, Yamashita, M, Yamagata, A, Kaiser, S.E, Iwai, K, Fukai, S. | 登録日 | 2011-06-07 | 公開日 | 2011-12-14 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.701 Å) | 主引用文献 | Specific recognition of linear ubiquitin chains by the Npl4 zinc finger (NZF) domain of the HOIL-1L subunit of the linear ubiquitin chain assembly complex Proc.Natl.Acad.Sci.USA, 108, 2011
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2YVX
| Crystal structure of magnesium transporter MgtE | 分子名称: | MAGNESIUM ION, Mg2+ transporter MgtE | 著者 | Hattori, M, Tanaka, Y, Fukai, S, Ishitani, R, Nureki, O. | 登録日 | 2007-04-18 | 公開日 | 2007-09-04 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (3.5 Å) | 主引用文献 | Crystal structure of the MgtE Mg(2+) transporter Nature, 448, 2007
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5X1C
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6L9W
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6L9V
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6L9U
| Crystal structure of mouse TIFA | 分子名称: | TRAF-interacting protein with FHA domain-containing protein A | 著者 | Nakamura, T, Yamagata, Y. | 登録日 | 2019-11-11 | 公開日 | 2020-04-01 | 実験手法 | X-RAY DIFFRACTION (2.601 Å) | 主引用文献 | Structural analysis of TIFA: Insight into TIFA-dependent signal transduction in innate immunity. Sci Rep, 10, 2020
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7YR9
| Crystal structure of the immature form of TtPetA | 分子名称: | CHLORIDE ION, GLYCEROL, SULFATE ION, ... | 著者 | Tsutsumi, E, Niwa, S, Takeda, K. | 登録日 | 2022-08-09 | 公開日 | 2023-09-20 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Structure of a putative immature form of a Rieske-type iron-sulfur protein in complex with zinc chloride. Commun Chem, 6, 2023
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7YRA
| Crystal structure of [2Fe-2S]-TtPetA | 分子名称: | CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, GLYCEROL, ... | 著者 | Tsutsumi, E, Niwa, S, Takeda, K. | 登録日 | 2022-08-09 | 公開日 | 2023-09-20 | 実験手法 | X-RAY DIFFRACTION (1.79 Å) | 主引用文献 | Structure of a putative immature form of a Rieske-type iron-sulfur protein in complex with zinc chloride. Commun Chem, 6, 2023
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2RRN
| Solution structure of SecDF periplasmic domain P4 | 分子名称: | Probable SecDF protein-export membrane protein | 著者 | Tanaka, T, Tsukazaki, T, Echizen, Y, Nureki, O, Kohno, T. | 登録日 | 2011-01-30 | 公開日 | 2011-05-18 | 最終更新日 | 2024-05-01 | 実験手法 | SOLUTION NMR | 主引用文献 | Structure and function of a membrane component SecDF that enhances protein export Nature, 474, 2011
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5X1D
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5X1A
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1ULH
| A short peptide insertion crucial for angiostatic activity of human tryptophanyl-tRNA synthetase | 分子名称: | Tryptophanyl-tRNA synthetase | 著者 | Kise, Y, Sengoku, T, Ishii, R, Yokoyama, S, Park, S.G, Lee, S.W, Kim, S, Nureki, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2003-09-12 | 公開日 | 2004-02-03 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.31 Å) | 主引用文献 | A short peptide insertion crucial for angiostatic activity of human tryptophanyl-tRNA synthetase Nat.Struct.Mol.Biol., 11, 2004
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7XJE
| Crystal structure of bacteriorhodopsin in the K state refined against the extrapolated dataset | 分子名称: | 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, RETINAL | 著者 | Taguchi, S, Niwa, S, Takeda, K. | 登録日 | 2022-04-16 | 公開日 | 2023-03-01 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (1.33 Å) | 主引用文献 | Detailed analysis of distorted retinal and its interaction with surrounding residues in the K intermediate of bacteriorhodopsin Commun Biol, 6, 2023
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7XJC
| Crystal structure of bacteriorhodopsin in the ground and K states after green laser irradiation | 分子名称: | 2,10,23-TRIMETHYL-TETRACOSANE, 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, ... | 著者 | Taguchi, S, Niwa, S, Takeda, K. | 登録日 | 2022-04-16 | 公開日 | 2023-03-01 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.33 Å) | 主引用文献 | Detailed analysis of distorted retinal and its interaction with surrounding residues in the K intermediate of bacteriorhodopsin Commun Biol, 6, 2023
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7XJD
| Crystal structure of bacteriorhodopsin in the ground state by red laser irradiation | 分子名称: | 2,10,23-TRIMETHYL-TETRACOSANE, 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, ... | 著者 | Taguchi, S, Niwa, S, Takeda, K. | 登録日 | 2022-04-16 | 公開日 | 2023-03-22 | 実験手法 | X-RAY DIFFRACTION (1.33 Å) | 主引用文献 | Detailed analysis of distorted retinal and its interaction with surrounding residues in the K intermediate of bacteriorhodopsin. Commun Biol, 6, 2023
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7WZU
| Crystal structure of metallo-beta-lactamase IMP-6. | 分子名称: | Beta-lactamase, ZINC ION | 著者 | Yamaguchi, Y, Kurosaki, H. | 登録日 | 2022-02-19 | 公開日 | 2023-01-04 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.954 Å) | 主引用文献 | Difference in the Inhibitory Effect of Thiol Compounds and Demetallation Rates from the Zn(II) Active Site of Metallo-beta-lactamases (IMP-1 and IMP-6) Associated with a Single Amino Acid Substitution. Acs Infect Dis., 9, 2023
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3H39
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3H38
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3H37
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3H3A
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3AQO
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7WSR
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7WST
| Cryo-EM structure of the barley Yellow stripe 1 transporter in complex with Fe(III)-DMA | 分子名称: | (2~{S})-1-[(3~{S})-3-[[(3~{S})-3,4-bis(oxidanyl)-4-oxidanylidene-butyl]amino]-4-oxidanyl-4-oxidanylidene-butyl]azetidine-2-carboxylic acid, CHOLESTEROL HEMISUCCINATE, FE (III) ION, ... | 著者 | Yamagata, A. | 登録日 | 2022-02-01 | 公開日 | 2022-11-30 | 最終更新日 | 2023-01-11 | 実験手法 | ELECTRON MICROSCOPY (2.7 Å) | 主引用文献 | Uptake mechanism of iron-phytosiderophore from the soil based on the structure of yellow stripe transporter. Nat Commun, 13, 2022
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