Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3SH3
DownloadVisualize
BU of 3sh3 by Molmil
Crystal structure of a pro-inflammatory lectin from the seeds of Dioclea wilsonii STANDL
分子名称: 5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside, CALCIUM ION, CHLORIDE ION, ...
著者Rangel, T.B.A, Rocha, B.A.M, Bezerra, G.A, Bezerra, M.J.B, Nascimento, K.S, Nagano, C.S, Sampaio, A.H, Assreuy, A.M.S, Gruber, K, Delatorre, P, Cavada, B.S.
登録日2011-06-15
公開日2011-10-05
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of a pro-inflammatory lectin from the seeds of Dioclea wilsonii Standl.
Biochimie, 94, 2012
8ADX
DownloadVisualize
BU of 8adx by Molmil
Structure of the Reconstructed Ancestor of Phenolic Acid Decarboxylase AncPAD55
分子名称: Phenolic acid decarboxylase N55, SULFATE ION
著者Schruefer, A, Mokos, D, Gruber, K, Daniel, B.
登録日2022-07-12
公開日2023-08-02
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Reconstructed ancestral sequences of bacterial phenolic acid decarboxylase show increased thermostability
To Be Published
8B30
DownloadVisualize
BU of 8b30 by Molmil
Structure of the Reconstructed Ancestor of Phenolic Acid Decarboxylase AncPAD31
分子名称: Phenolic acid decarboxylase N31
著者Mokos, D, Schruefer, A, Gruber, K, Daniel, B.
登録日2022-09-15
公開日2023-09-27
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Stability Increase of Phenolic Acid Decarboxylase by a Combination of Protein and Solvent Engineering Unlocks Applications at Elevated Temperatures.
Acs Sustain Chem Eng, 12, 2024
3T6J
DownloadVisualize
BU of 3t6j by Molmil
Structure of human DPPIII in complex with the opioid peptide Tynorphin, at 3.0 Angstroms
分子名称: Dipeptidyl peptidase 3, Tynorphin
著者Bezerra, G.A, Gruber, K.
登録日2011-07-28
公開日2012-04-04
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.976 Å)
主引用文献Entropy-driven binding of opioid peptides induces a large domain motion in human dipeptidyl peptidase III.
Proc.Natl.Acad.Sci.USA, 109, 2012
3T6B
DownloadVisualize
BU of 3t6b by Molmil
Structure of human DPPIII in complex with the opioid peptide Tynorphin, at 2.4 Angstroms
分子名称: Dipeptidyl peptidase 3, Tynorphin
著者Bezerra, G.A, Gruber, K.
登録日2011-07-28
公開日2012-04-04
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Entropy-driven binding of opioid peptides induces a large domain motion in human dipeptidyl peptidase III
Proc.Natl.Acad.Sci.USA, 109, 2012
3AX4
DownloadVisualize
BU of 3ax4 by Molmil
Three-dimensional structure of lectin from Dioclea violacea and comparative vasorelaxant effects with Dioclea rostrata
分子名称: 5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside, CALCIUM ION, MANGANESE (II) ION, ...
著者Bezerra, M.J.B, Bezerra, G.A, Martins, J.L, Nascimento, K.S, Nagano, C.S, Gruber, K, Assereuy, A.M, Delatorre, P, Rocha, B.A.M, Cavada, B.S.
登録日2011-03-29
公開日2012-04-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.613 Å)
主引用文献Crystal structure of Dioclea violacea lectin and a comparative study of vasorelaxant properties with Dioclea rostrata lectin
Int.J.Biochem.Cell Biol., 45, 2013
4XTM
DownloadVisualize
BU of 4xtm by Molmil
Crystal structure of a recombinant Vatairea macrocarpa seed lectin complexed with GalNAc
分子名称: 2-acetamido-2-deoxy-alpha-D-galactopyranose, CALCIUM ION, CITRIC ACID, ...
著者Sousa, B.L, Silva-Filho, J.C, Kumar, P, Lyskowski, A, Bezerra, G.A, Delatorre, P, Rocha, B.A.M, Cunha, R.M.S, Nagano, C.S, Gruber, K, Cavada, B.S.
登録日2015-01-23
公開日2016-01-27
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of a recombinant Vatairea macrocarpa seed lectin
Int.J.Biochem.Cell Biol., 2016
4XTP
DownloadVisualize
BU of 4xtp by Molmil
Crystal structure of a recombinant Vatairea macrocarpa seed lectin complexed with Tn antigen
分子名称: 2-acetamido-2-deoxy-alpha-D-galactopyranose, CALCIUM ION, CITRIC ACID, ...
著者Sousa, B.L, Silva-Filho, J.C, Kumar, P, Lyskowski, A, Bezerra, G.A, Delatorre, P, Rocha, B.A.M, Cunha, R.M.S, Nagano, C.S, Gruber, K, Cavada, B.S.
登録日2015-01-23
公開日2016-01-27
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Crystal structure of a recombinant Vatairea macrocarpa seed lectin
Int.J.Biochem.Cell Biol., 2016
4XXA
DownloadVisualize
BU of 4xxa by Molmil
Crystal structure of a recombinant Vatairea macrocarpa seed lectin
分子名称: CALCIUM ION, GLYCEROL, MANGANESE (II) ION, ...
著者Sousa, B.L, Silva-Filho, J.C, Kumar, P, Lyskowski, A, Bezerra, G.A, Delatorre, P, Rocha, B.A.M, Cunha, R.M.S, Nagano, C.S, Gruber, K, Cavada, B.S.
登録日2015-01-30
公開日2016-01-27
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of a recombinant Vatairea macrocarpa seed lectin
Int.J.Biochem.Cell Biol., 2016
5EB4
DownloadVisualize
BU of 5eb4 by Molmil
The crystal structure of almond HNL, PaHNL5 V317A, expressed in Aspergillus niger
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Pavkov-Keller, T, Steinkellner, G, Gruber, K.
登録日2015-10-17
公開日2016-04-20
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structures of almond hydroxynitrile lyase isoenzyme 5 provide a rationale for the lack of oxidoreductase activity in flavin dependent HNLs.
J.Biotechnol., 235, 2016
3D2J
DownloadVisualize
BU of 3d2j by Molmil
Structure of berberine bridge enzyme from Eschscholzia californica, tetragonal crystal form
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION, ...
著者Winkler, A, Lyskowski, A, Macheroux, P, Gruber, K.
登録日2008-05-08
公開日2008-10-28
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献A concerted mechanism for berberine bridge enzyme
Nat.Chem.Biol., 4, 2008
5D79
DownloadVisualize
BU of 5d79 by Molmil
Structure of BBE-like #28 from Arabidopsis thaliana
分子名称: Berberine bridge enzyme-like protein, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Daniel, B, Kumar, P, Gruber, K.
登録日2015-08-13
公開日2016-06-22
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.849 Å)
主引用文献Structure of a Berberine Bridge Enzyme-Like Enzyme with an Active Site Specific to the Plant Family Brassicaceae.
Plos One, 11, 2016
5E33
DownloadVisualize
BU of 5e33 by Molmil
Structure of human DPP3 in complex with met-enkephalin
分子名称: Dipeptidyl peptidase 3, MAGNESIUM ION, Met-enkephalin, ...
著者Kumar, P, Reithofer, V, Reisinger, M, Pavkov-Keller, T, Wallner, S, Macheroux, P, Gruber, K.
登録日2015-10-01
公開日2016-04-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.837 Å)
主引用文献Substrate complexes of human dipeptidyl peptidase III reveal the mechanism of enzyme inhibition.
Sci Rep, 6, 2016
5E3A
DownloadVisualize
BU of 5e3a by Molmil
Structure of human DPP3 in complex with opioid peptide leu-enkephalin
分子名称: Dipeptidyl peptidase 3, Leu-enkephalin, MAGNESIUM ION, ...
著者Kumar, P, Reithofer, V, Reisinger, M, Pavkov-Keller, T, Wallner, S, Macheroux, P, Gruber, K.
登録日2015-10-02
公開日2016-04-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Substrate complexes of human dipeptidyl peptidase III reveal the mechanism of enzyme inhibition.
Sci Rep, 6, 2016
5E3C
DownloadVisualize
BU of 5e3c by Molmil
Structure of human DPP3 in complex with hemorphin like opioid peptide IVYPW
分子名称: Dipeptidyl peptidase 3, IVYPW, MAGNESIUM ION, ...
著者Kumar, P, Reithofer, V, Reisinger, M, Pavkov-Keller, T, Wallner, S, Macheroux, P, Gruber, K.
登録日2015-10-02
公開日2016-04-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.765 Å)
主引用文献Substrate complexes of human dipeptidyl peptidase III reveal the mechanism of enzyme inhibition.
Sci Rep, 6, 2016
5E2Q
DownloadVisualize
BU of 5e2q by Molmil
Structure of human DPP3 in complex with angiotensin-II
分子名称: Dipeptidyl peptidase 3, MAGNESIUM ION, POTASSIUM ION, ...
著者Kumar, P, Reisinger, M, Reithofer, V, Gruber, K.
登録日2015-10-01
公開日2016-04-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.404 Å)
主引用文献Substrate complexes of human dipeptidyl peptidase III reveal the mechanism of enzyme inhibition.
Sci Rep, 6, 2016
3D2H
DownloadVisualize
BU of 3d2h by Molmil
Structure of berberine bridge enzyme from Eschscholzia californica, monoclinic crystal form
分子名称: (2R,3S,4S)-5-[(4R)-6',7'-dimethyl-2,3',5-trioxo-1'H-spiro[imidazolidine-4,2'-quinoxalin]-4'(3'H)-yl]-2,3,4-trihydroxypentyl-adenosine diphosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Winkler, A, Lyskowski, A, Macheroux, P, Gruber, K.
登録日2008-05-08
公開日2008-10-28
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献A concerted mechanism for berberine bridge enzyme
Nat.Chem.Biol., 4, 2008
5EGY
DownloadVisualize
BU of 5egy by Molmil
Structure of ligand free human DPP3 in closed form.
分子名称: Dipeptidyl peptidase 3, MAGNESIUM ION, ZINC ION
著者Kumar, P, Reithofer, V, Reisinger, M, Pavkov-Keller, T, Wallner, S, Macheroux, P, Gruber, K.
登録日2015-10-27
公開日2016-04-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.741 Å)
主引用文献Substrate complexes of human dipeptidyl peptidase III reveal the mechanism of enzyme inhibition.
Sci Rep, 6, 2016
3CSK
DownloadVisualize
BU of 3csk by Molmil
Structure of DPP III from Saccharomyces cerevisiae
分子名称: MAGNESIUM ION, Probable dipeptidyl-peptidase 3, ZINC ION
著者Baral, P.K, Jajcanin, N, Deller, S, Macheroux, P, Abramic, M, Gruber, K.
登録日2008-04-10
公開日2008-06-10
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献The first structure of dipeptidyl-peptidase III provides insight into the catalytic mechanism and mode of substrate binding.
J.Biol.Chem., 283, 2008
5EHH
DownloadVisualize
BU of 5ehh by Molmil
Structure of human DPP3 in complex with endomorphin-2.
分子名称: Dipeptidyl peptidase 3, Endomorphin-2, MAGNESIUM ION, ...
著者Kumar, P, Reithofer, V, Reisinger, M, Pavkov-Keller, T, Wallner, S, Macheroux, P, Gruber, K.
登録日2015-10-28
公開日2016-04-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Substrate complexes of human dipeptidyl peptidase III reveal the mechanism of enzyme inhibition.
Sci Rep, 6, 2016
3D2D
DownloadVisualize
BU of 3d2d by Molmil
Structure of berberine bridge enzyme in complex with (S)-reticuline
分子名称: (S)-reticuline, 2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Winkler, A, Lyskowski, A, Macheroux, P, Gruber, K.
登録日2008-05-08
公開日2008-10-28
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.796 Å)
主引用文献A concerted mechanism for berberine bridge enzyme
Nat.Chem.Biol., 4, 2008
5EB5
DownloadVisualize
BU of 5eb5 by Molmil
The crystal structure of almond HNL, PaHNL5 V317A, in complex with benzyl alcohol
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Pavkov-Keller, T, Steinkellner, G, Gruber, K.
登録日2015-10-17
公開日2016-04-20
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structures of almond hydroxynitrile lyase isoenzyme 5 provide a rationale for the lack of oxidoreductase activity in flavin dependent HNLs.
J.Biotechnol., 235, 2016
3DQZ
DownloadVisualize
BU of 3dqz by Molmil
Structure of the hydroxynitrile lyase from Arabidopsis thaliana
分子名称: Alpha-hydroxynitrile lyase-like protein, CHLORIDE ION
著者Andexer, J, Staunig, N, Gruber, K.
登録日2008-07-10
公開日2009-07-14
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.504 Å)
主引用文献Hydroxynitrile lyases with alpha / beta-hydrolase fold: two enzymes with almost identical 3D structures but opposite enantioselectivities and different reaction mechanisms
Chembiochem, 13, 2012
4J2P
DownloadVisualize
BU of 4j2p by Molmil
Crystal structure of LuxF from Photobacterium leiognathi
分子名称: Non-fluorescent flavoprotein
著者Winkler, A, Macheroux, P, Gruber, K.
登録日2013-02-05
公開日2014-02-05
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural and biochemical properties of LuxF from Photobacterium leiognathi.
Biochim. Biophys. Acta, 1854, 2015
4K1Z
DownloadVisualize
BU of 4k1z by Molmil
Crystal structure of Canavalia boliviana lectin in complex with Man1-4Man-OMe
分子名称: CADMIUM ION, CALCIUM ION, CHLORIDE ION, ...
著者Bezerra, G.A, Viertlmayr, R, Moura, T.R, Delatorre, P, Rocha, B.A.M, Cavada, B.S, Gruber, K.
登録日2013-04-07
公開日2014-04-09
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural Studies of an Anti-Inflammatory Lectin from Canavalia boliviana Seeds in Complex with Dimannosides.
Plos One, 9, 2014

221051

件を2024-06-12に公開中

PDB statisticsPDBj update infoContact PDBjnumon