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7VJ9
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BU of 7vj9 by Molmil
class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (semiquinone dark structure)
分子名称: DNA photolyase, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION
著者Maestre-Reyna, M, Yang, C.-H, Huang, W.-C, Nango, E, Ngura Putu, E.P.G, Franz-Badur, S, Wu, W.-J, Wu, H.-Y, Wang, P.-H, Hosokawa, Y, Saft, M, Emmerich, H.-J, Liao, J.-H, Lee, C.-C, Huang, K.-F, Chang, Y.-K, Weng, J.-H, Royant, A, Gad, W, Pang, A.H, Chang, C.-W, Sugahara, M, Owada, S, Joti, Y, Yamashita, A, Tanaka, R, Tanaka, T, Luo, F.J, Tono, K, Kiontke, S, Yamamoto, J, Iwata, S, Essen, L.-O, Bessho, Y, Tsai, M.-D.
登録日2021-09-28
公開日2022-03-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Serial crystallography captures dynamic control of sequential electron and proton transfer events in a flavoenzyme.
Nat.Chem., 14, 2022
7VJK
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BU of 7vjk by Molmil
class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (100 us time-point)
分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, DNA photolyase, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Maestre-Reyna, M, Yang, C.-H, Huang, W.-C, Nango, E, Ngura Putu, E.P.G, Franz-Badur, S, Wu, W.-J, Wu, H.-Y, Wang, P.-H, Hosokawa, Y, Saft, M, Emmerich, H.-J, Liao, J.-H, Lee, C.-C, Huang, K.-F, Chang, Y.-K, Weng, J.-H, Royant, A, Gad, W, Pang, A.H, Chang, C.-W, Sugahara, M, Owada, S, Joti, Y, Yamashita, A, Tanaka, R, Tanaka, T, Luo, F.J, Tono, K, Kiontke, S, Yamamoto, J, Iwata, S, Essen, L.-O, Bessho, Y, Tsai, M.-D.
登録日2021-09-28
公開日2022-03-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Serial crystallography captures dynamic control of sequential electron and proton transfer events in a flavoenzyme.
Nat.Chem., 14, 2022
7VJG
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BU of 7vjg by Molmil
class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (1 us time-point)
分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, DNA photolyase, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Maestre-Reyna, M, Yang, C.-H, Huang, W.-C, Nango, E, Ngura Putu, E.P.G, Franz-Badur, S, Wu, W.-J, Wu, H.-Y, Wang, P.-H, Hosokawa, Y, Saft, M, Emmerich, H.-J, Liao, J.-H, Lee, C.-C, Huang, K.-F, Chang, Y.-K, Weng, J.-H, Royant, A, Gad, W, Pang, A.H, Chang, C.-W, Sugahara, M, Owada, S, Joti, Y, Yamashita, A, Tanaka, R, Tanaka, T, Luo, F.J, Tono, K, Kiontke, S, Yamamoto, J, Iwata, S, Essen, L.-O, Bessho, Y, Tsai, M.-D.
登録日2021-09-28
公開日2022-03-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Serial crystallography captures dynamic control of sequential electron and proton transfer events in a flavoenzyme.
Nat.Chem., 14, 2022
7VIW
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BU of 7viw by Molmil
Dark adapted MmCPDII during oxidized to semiquinone TR-SFX studies
分子名称: DNA photolyase, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION
著者Maestre-Reyna, M, Yang, C.-H, Huang, W.-C, Nango, E, Ngura Putu, E.P.G, Franz-Badur, S, Wu, W.-J, Wu, H.-Y, Wang, P.-H, Hosokawa, Y, Saft, M, Emmerich, H.-J, Liao, J.-H, Lee, C.-C, Huang, K.-F, Chang, Y.-K, Weng, J.-H, Royant, A, Gad, W, Pang, A.H, Chang, C.-W, Sugahara, M, Owada, S, Joti, Y, Yamashita, A, Tanaka, R, Tanaka, T, Luo, F.J, Tono, K, Kiontke, S, Yamamoto, J, Iwata, S, Essen, L.-O, Bessho, Y, Tsai, M.-D.
登録日2021-09-28
公開日2022-03-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Serial crystallography captures dynamic control of sequential electron and proton transfer events in a flavoenzyme.
Nat.Chem., 14, 2022
7VJ3
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BU of 7vj3 by Molmil
class II photolyase MmCPDII oxidized to semiquinone TR-SFX studies (400 us time-point)
分子名称: DNA photolyase, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION
著者Maestre-Reyna, M, Yang, C.-H, Huang, W.-C, Nango, E, Ngura Putu, E.P.G, Franz-Badur, S, Wu, W.-J, Wu, H.-Y, Wang, P.-H, Hosokawa, Y, Saft, M, Emmerich, H.-J, Liao, J.-H, Lee, C.-C, Huang, K.-F, Chang, Y.-K, Weng, J.-H, Royant, A, Gad, W, Pang, A.H, Chang, C.-W, Sugahara, M, Owada, S, Joti, Y, Yamashita, A, Tanaka, R, Tanaka, T, Luo, F.J, Tono, K, Kiontke, S, Yamamoto, J, Iwata, S, Essen, L.-O, Bessho, Y, Tsai, M.-D.
登録日2021-09-28
公開日2022-03-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Serial crystallography captures dynamic control of sequential electron and proton transfer events in a flavoenzyme.
Nat.Chem., 14, 2022
5CWR
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BU of 5cwr by Molmil
Crystal Structure of human DNA polymerase lambda L431A mutant in complex with a one nucleotide DNA gap and dCTP
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), ...
著者Liu, M.S, Tsai, M.D.
登録日2015-07-28
公開日2016-02-24
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda
J.Am.Chem.Soc., 138, 2016
5CB1
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BU of 5cb1 by Molmil
Apo enzyme of human Polymerase lambda
分子名称: DNA polymerase lambda
著者Liu, M.S, Tsai, M.D.
登録日2015-06-30
公開日2016-02-24
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda
J.Am.Chem.Soc., 138, 2016
5CHG
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BU of 5chg by Molmil
Human DNA polymerase lambda L431A mutant- MgdGTP binary and complex with 6 paired DNA
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(P*GP*TP*AP*CP*TP*G)-3'), ...
著者Liu, M.S, Tsai, M.D.
登録日2015-07-10
公開日2016-02-24
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda
J.Am.Chem.Soc., 138, 2016
5DDM
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BU of 5ddm by Molmil
Human DNA polymerase lambda- Apoenzyme and complex with 6 paired DNA
分子名称: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(P*GP*TP*AP*CP*TP*G)-3'), DNA polymerase lambda, ...
著者Liu, M.S, Tsai, M.D.
登録日2015-08-25
公開日2016-02-24
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.802 Å)
主引用文献Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda
J.Am.Chem.Soc., 138, 2016
5DDY
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BU of 5ddy by Molmil
Binary complex of human Polymerase lambda with dCTP
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA polymerase lambda, MAGNESIUM ION, ...
著者Liu, M.S, Tsai, M.D.
登録日2015-08-25
公開日2016-02-24
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (3.36 Å)
主引用文献Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda
J.Am.Chem.Soc., 138, 2016
5CA7
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BU of 5ca7 by Molmil
Human DNA polymerase lambda- MgdGTP binary and complex with 6 paired DNA
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(P*GP*TP*AP*CP*TP*G)-3'), ...
著者Liu, M.S, Tsai, M.D.
登録日2015-06-29
公開日2016-02-24
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.522 Å)
主引用文献Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda
J.Am.Chem.Soc., 138, 2016
5DKW
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BU of 5dkw by Molmil
Ternary crystal structure of polymerase lambda with a GA mispair at the primer terminus with Ca2+ in the active
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), ...
著者Liu, M.S, Tsai, M.D.
登録日2015-09-04
公開日2016-02-24
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.689 Å)
主引用文献Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda
J.Am.Chem.Soc., 138, 2016
5CP2
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BU of 5cp2 by Molmil
Human DNA polymerase lambda L431A mutant- Apoenzyme and complex with 6 paired DNA
分子名称: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(P*GP*TP*AP*CP*TP*G)-3'), DNA polymerase lambda, ...
著者Liu, M.S, Tsai, M.D.
登録日2015-07-21
公開日2016-02-24
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.36 Å)
主引用文献Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda
J.Am.Chem.Soc., 138, 2016
5CJ7
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BU of 5cj7 by Molmil
Human DNA polymerase lambda L431A mutant- MgdTTP binary and complex with 6 paired DNA
分子名称: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(P*GP*TP*AP*CP*TP*G)-3'), DNA polymerase lambda, ...
著者Liu, M.S, Tsai, M.D.
登録日2015-07-14
公開日2016-02-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.901 Å)
主引用文献Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda
J.Am.Chem.Soc., 138, 2016
8J8C
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BU of 8j8c by Molmil
Cryo-EM structure of Asfv topoisomerase 2 - apo conformer IIIb
分子名称: DNA topoisomerase 2
著者Chang, C.-W, Tsai, M.-D.
登録日2023-05-01
公開日2024-02-07
最終更新日2025-06-25
実験手法ELECTRON MICROSCOPY (2.69 Å)
主引用文献A unified view on enzyme catalysis by cryo-EM study of a DNA topoisomerase.
Commun Chem, 7, 2024
8J89
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BU of 8j89 by Molmil
Cryo-EM structure of Asfv topoisomerase 2 - apo conformer IIa
分子名称: DNA topoisomerase 2
著者Chang, C.-W, Tsai, M.-D.
登録日2023-05-01
公開日2024-02-07
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (2.31 Å)
主引用文献A unified view on enzyme catalysis by cryo-EM study of a DNA topoisomerase.
Commun Chem, 7, 2024
8J8B
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BU of 8j8b by Molmil
Cryo-EM structure of Asfv topoisomerase 2 - apo conformer IIIa
分子名称: DNA topoisomerase 2
著者Chang, C.-W, Tsai, M.-D.
登録日2023-05-01
公開日2024-02-07
最終更新日2024-04-17
実験手法ELECTRON MICROSCOPY (2.43 Å)
主引用文献A unified view on enzyme catalysis by cryo-EM study of a DNA topoisomerase.
Commun Chem, 7, 2024
8J87
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BU of 8j87 by Molmil
Asfv topoisomerase 2 - apo conformer Ia
分子名称: DNA topoisomerase 2
著者Chang, C.-W, Tsai, M.-D.
登録日2023-05-01
公開日2024-02-07
最終更新日2025-06-25
実験手法ELECTRON MICROSCOPY (3.42 Å)
主引用文献A unified view on enzyme catalysis by cryo-EM study of a DNA topoisomerase.
Commun Chem, 7, 2024
8J88
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BU of 8j88 by Molmil
Asfv topoisomerase 2 - apo conformer Ib
分子名称: DNA topoisomerase 2
著者Chang, C.-W, Tsai, M.-D.
登録日2023-05-01
公開日2024-02-07
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (3.49 Å)
主引用文献A unified view on enzyme catalysis by cryo-EM study of a DNA topoisomerase.
Commun Chem, 7, 2024
8J8A
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BU of 8j8a by Molmil
Cryo-EM structure of Asfv topoisomerase 2 - apo conformer IIb
分子名称: DNA topoisomerase 2
著者Chang, C.-W, Tsai, M.-D.
登録日2023-05-01
公開日2024-02-07
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (2.51 Å)
主引用文献A unified view on enzyme catalysis by cryo-EM study of a DNA topoisomerase.
Commun Chem, 7, 2024
8JA2
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BU of 8ja2 by Molmil
ASFV Topoisomerase ATPase domain in complex with AMP-PNP and Mg2+
分子名称: DNA topoisomerase 2, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
著者Pang, A.H, Chang, C.-W, Tsai, M.-D.
登録日2023-05-05
公開日2024-02-07
最終更新日2024-04-17
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献A unified view on enzyme catalysis by cryo-EM study of a DNA topoisomerase.
Commun Chem, 7, 2024
8J9V
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BU of 8j9v by Molmil
Cryo-EM structure of the African swine fever virus topoisomerase 2 complexed with Cut02aDNA and etoposide (EDI-1)
分子名称: (5S,5aR,8aR,9R)-9-(4-hydroxy-3,5-dimethoxyphenyl)-8-oxo-5,5a,6,8,8a,9-hexahydrofuro[3',4':6,7]naphtho[2,3-d][1,3]dioxol -5-yl 4,6-O-[(1R)-ethylidene]-beta-D-glucopyranoside, DNA (5'-D(*GP*AP*GP*GP*TP*AP*TP*GP*TP*AP*GP*GP*C)-3'), DNA (5'-D(*GP*GP*CP*CP*GP*CP*CP*TP*AP*CP*AP*TP*AP*CP*CP*TP*C)-3'), ...
著者Chang, C.-W, Tsai, M.-D.
登録日2023-05-05
公開日2024-02-07
最終更新日2024-04-17
実験手法ELECTRON MICROSCOPY (2.71 Å)
主引用文献A unified view on enzyme catalysis by cryo-EM study of a DNA topoisomerase.
Commun Chem, 7, 2024
8J9X
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BU of 8j9x by Molmil
Cryo-EM structure of the African swine fever virus topoisomerase 2 complexed with Cut02aDNA and m-AMSA (EDI-3)
分子名称: DNA (5'-D(*GP*AP*GP*GP*TP*AP*TP*GP*TP*AP*GP*GP*C)-3'), DNA (5'-D(*GP*GP*CP*CP*GP*CP*CP*TP*AP*CP*AP*TP*AP*CP*CP*TP*C)-3'), DNA topoisomerase 2, ...
著者Chang, C.-W, Tsai, M.-D.
登録日2023-05-05
公開日2024-02-07
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献A unified view on enzyme catalysis by cryo-EM study of a DNA topoisomerase.
Commun Chem, 7, 2024
8JA1
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BU of 8ja1 by Molmil
ASFV Topoisomerase ATPase domain in complex with AMP-PNP and Mg2+ (oxidized form)
分子名称: DNA topoisomerase 2, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
著者Chang, C.-W, Pang, A.H, Tsai, M.-D.
登録日2023-05-05
公開日2024-02-07
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.14 Å)
主引用文献A unified view on enzyme catalysis by cryo-EM study of a DNA topoisomerase.
Commun Chem, 7, 2024
8J9W
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BU of 8j9w by Molmil
Cryo-EM structure of the African swine fever virus topoisomerase 2 complexed with Cut02bDNA and etoposide (EDI-2)
分子名称: (5S,5aR,8aR,9R)-9-(4-hydroxy-3,5-dimethoxyphenyl)-8-oxo-5,5a,6,8,8a,9-hexahydrofuro[3',4':6,7]naphtho[2,3-d][1,3]dioxol -5-yl 4,6-O-[(1R)-ethylidene]-beta-D-glucopyranoside, DNA (5'-D(*AP*AP*GP*AP*AP*CP*TP*CP*TP*GP*TP*AP*G)-3'), DNA (5'-D(*CP*AP*TP*GP*CP*TP*AP*CP*AP*GP*AP*GP*TP*TP*CP*TP*T)-3'), ...
著者Chang, C.-W, Tsai, M.-D.
登録日2023-05-05
公開日2024-02-07
最終更新日2025-06-25
実験手法ELECTRON MICROSCOPY (2.76 Å)
主引用文献A unified view on enzyme catalysis by cryo-EM study of a DNA topoisomerase.
Commun Chem, 7, 2024

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