7EXU
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![BU of 7exu by Molmil](/molmil-images/mine/7exu) | GH127 beta-L-arabinofuranosidase HypBA1 E322Q mutant complexed with p-nitrophenyl beta-L-arabinofuranoside | 分子名称: | (2S,3R,4R,5R)-2-(hydroxymethyl)-5-(4-nitrophenoxy)oxolane-3,4-diol, Non-reducing end beta-L-arabinofuranosidase, ZINC ION | 著者 | Maruyama, S, Arakawa, T, Yamada, C, Fujita, K, Fushinobu, S. | 登録日 | 2021-05-28 | 公開日 | 2021-11-17 | 最終更新日 | 2024-02-21 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Substrate complex structure, active site labeling and catalytic role of the zinc ion in cysteine glycosidase. Glycobiology, 32, 2022
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7EXV
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![BU of 7exv by Molmil](/molmil-images/mine/7exv) | GH127 beta-L-arabinofuranosidase HypBA1 covalently complexed with beta-L-arabinofuranoylamide | 分子名称: | 2-bromanyl-N-[(2S,3R,4R,5S)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]ethanamide, Non-reducing end beta-L-arabinofuranosidase, ZINC ION | 著者 | Sawano, K, Arakawa, T, Yamada, C, Fujita, K, Fushinobu, S. | 登録日 | 2021-05-28 | 公開日 | 2021-11-17 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Substrate complex structure, active site labeling and catalytic role of the zinc ion in cysteine glycosidase. Glycobiology, 32, 2022
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1IZ5
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![BU of 1iz5 by Molmil](/molmil-images/mine/1iz5) | Pyrococcus furiosus PCNA mutant (Met73Leu, Asp143Ala, Asp147Ala): orthorhombic form | 分子名称: | Proliferating cell nuclear antigen | 著者 | Matsumiya, S, Ishino, S, Ishino, Y, Morikawa, K. | 登録日 | 2002-09-23 | 公開日 | 2003-04-01 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Intermolecular ion pairs maintain the toroidal structure of Pyrococcus furiosus PCNA PROTEIN SCI., 12, 2003
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1ISQ
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![BU of 1isq by Molmil](/molmil-images/mine/1isq) | Pyrococcus furiosus PCNA complexed with RFCL PIP-box peptide | 分子名称: | Proliferating Cell Nuclear Antigen, replication factor C large subunit | 著者 | Matsumiya, S, Ishino, S, Ishino, Y, Morikawa, K. | 登録日 | 2001-12-19 | 公開日 | 2002-10-23 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Physical interaction between proliferating cell nuclear antigen and
replication factor C from Pyrococcus furiosus Genes Cells, 7, 2002
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1IQP
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![BU of 1iqp by Molmil](/molmil-images/mine/1iqp) | Crystal Structure of the Clamp Loader Small Subunit from Pyrococcus furiosus | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, RFCS | 著者 | Oyama, T, Ishino, Y, Cann, I.K.O, Ishino, S, Morikawa, K. | 登録日 | 2001-07-24 | 公開日 | 2001-09-19 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Atomic Structure of the Clamp Loader Small Subunit from Pyrococcus furiosus Mol.Cell, 8, 2001
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5YJI
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![BU of 5yji by Molmil](/molmil-images/mine/5yji) | Co-crystal structure of Mouse Nicotinamide N-methyltransferase (NNMT) with small molecule analog of Nicotinamide | 分子名称: | 6-methoxy-1-methyl-2H-pyridine-3-carboxamide, Nicotinamide N-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE | 著者 | Birudukota, S, Swaminathan, S, Thakur, M.K, Parveen, R, Kandan, S, Hallur, M.S, Rajagopal, S, Ruf, S, Dhakshinamoorthy, S, Kannt, A, Gosu, R. | 登録日 | 2017-10-10 | 公開日 | 2018-03-21 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.99 Å) | 主引用文献 | A small molecule inhibitor of Nicotinamide N-methyltransferase for the treatment of metabolic disorders. Sci Rep, 8, 2018
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5YJF
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![BU of 5yjf by Molmil](/molmil-images/mine/5yjf) | Co-crystal structure of Human Nicotinamide N-methyltransferase (NNMT) with small molecule analog of Nicotinamide | 分子名称: | 6-methoxy-1-methyl-2H-pyridine-3-carboxamide, Nicotinamide N-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE | 著者 | Swaminathan, S, Birudukota, S, Thakur, M.K, Parveen, R, Kandan, S, Hallur, M.S, Rajagopal, S, Ruf, S, Dhakshinamoorthy, S, Kannt, A, Gosu, R. | 登録日 | 2017-10-10 | 公開日 | 2018-03-21 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.49 Å) | 主引用文献 | A small molecule inhibitor of Nicotinamide N-methyltransferase for the treatment of metabolic disorders. Sci Rep, 8, 2018
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8K2N
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8K2J
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8K2K
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![BU of 8k2k by Molmil](/molmil-images/mine/8k2k) | Crystal structure of Group 3 Oligosaccharide/Monosaccharide-releasing beta-N-acetylgalactosaminidase NgaDssm in complex with GalNAc-thiazoline | 分子名称: | (3aR,5R,6R,7R,7aR)-5-(hydroxymethyl)-2-methyl-5,6,7,7a-tetrahydro-3aH-pyrano[3,2-d][1,3]thiazole-6,7-diol, CHLORIDE ION, GLYCEROL, ... | 著者 | Sumida, T, Fushinobu, S. | 登録日 | 2023-07-12 | 公開日 | 2024-04-24 | 最終更新日 | 2024-05-22 | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | 主引用文献 | Genetic and functional diversity of beta-N-acetylgalactosamine-targeting glycosidases expanded by deep-sea metagenome analysis. Nat Commun, 15, 2024
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8K2H
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![BU of 8k2h by Molmil](/molmil-images/mine/8k2h) | Crystal structure of Group 2Oligosaccharide/Monosaccharide-releasing beta-N-acetylhexosaminidase NgaAt from Arabidopsis thaliana in complex with GalNAc-thiazoline | 分子名称: | (3aR,5R,6R,7R,7aR)-5-(hydroxymethyl)-2-methyl-5,6,7,7a-tetrahydro-3aH-pyrano[3,2-d][1,3]thiazole-6,7-diol, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... | 著者 | Sumida, T, Fushinobu, S. | 登録日 | 2023-07-12 | 公開日 | 2024-04-24 | 最終更新日 | 2024-05-22 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Genetic and functional diversity of beta-N-acetylgalactosamine-targeting glycosidases expanded by deep-sea metagenome analysis. Nat Commun, 15, 2024
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8K2F
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8K2I
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![BU of 8k2i by Molmil](/molmil-images/mine/8k2i) | Crystal structure of Group 2 Oligosaccharide/Monosaccharide-releasing beta-N-acetylhexosaminidase NgaAt from Arabidopsis thaliana in complex with GlcNAc-thiazoline | 分子名称: | 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... | 著者 | Sumida, T, Fushinobu, S. | 登録日 | 2023-07-12 | 公開日 | 2024-04-24 | 最終更新日 | 2024-05-22 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Genetic and functional diversity of beta-N-acetylgalactosamine-targeting glycosidases expanded by deep-sea metagenome analysis. Nat Commun, 15, 2024
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8K2M
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![BU of 8k2m by Molmil](/molmil-images/mine/8k2m) | Crystal structure of Group 4 Monosaccharide-releasing beta-N-acetylgalactosaminidase NgaP2 from Paenibacillus sp. TS12 in complex with GalNAc-thiazoline | 分子名称: | (3aR,5R,6R,7R,7aR)-5-(hydroxymethyl)-2-methyl-5,6,7,7a-tetrahydro-3aH-pyrano[3,2-d][1,3]thiazole-6,7-diol, BROMIDE ION, Monosaccharide-releasing beta-N-acetylgalactosaminidase | 著者 | Sumida, T, Fushinobu, S. | 登録日 | 2023-07-12 | 公開日 | 2024-04-24 | 最終更新日 | 2024-05-22 | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | 主引用文献 | Genetic and functional diversity of beta-N-acetylgalactosamine-targeting glycosidases expanded by deep-sea metagenome analysis. Nat Commun, 15, 2024
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8K2L
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8K2G
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![BU of 8k2g by Molmil](/molmil-images/mine/8k2g) | |
5X6S
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![BU of 5x6s by Molmil](/molmil-images/mine/5x6s) | Acetyl xylan esterase from Aspergillus awamori | 分子名称: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylxylan esterase A, ... | 著者 | Komiya, D, Koseki, T, Fushinobu, S. | 登録日 | 2017-02-23 | 公開日 | 2017-08-23 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Crystal Structure and Substrate Specificity Modification of Acetyl Xylan Esterase from Aspergillus luchuensis Appl. Environ. Microbiol., 83, 2017
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8HR4
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8HR3
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![BU of 8hr3 by Molmil](/molmil-images/mine/8hr3) | [D-Cys5,Asp7,Val8,D-Lys16]-STp(5-17) | 分子名称: | DCY-CYS-ASP-VAL-CYS-CYS-ASN-PRO-ALA-CYS-ALA-DLY-CYS | 著者 | Shimamoto, S, Hidaka, Y, Yoshino, S, Goto, M. | 登録日 | 2022-12-14 | 公開日 | 2023-09-20 | 実験手法 | SOLUTION NMR | 主引用文献 | The Molecular Basis of Heat-Stable Enterotoxin for Vaccine Development and Cancer Cell Detection. Molecules, 28, 2023
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1J3P
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![BU of 1j3p by Molmil](/molmil-images/mine/1j3p) | Crystal structure of Thermococcus litoralis phosphoglucose isomerase | 分子名称: | FE (III) ION, Phosphoglucose Isomerase | 著者 | Jeong, J.-J, Fushinobu, S, Ito, S, Hidaka, M, Shoun, H, Wakagi, T. | 登録日 | 2003-02-11 | 公開日 | 2004-02-24 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.02 Å) | 主引用文献 | Crystal structure of a novel cupin-type phosphoglucose isomerase To be Published
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1Y7T
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![BU of 1y7t by Molmil](/molmil-images/mine/1y7t) | Crystal structure of NAD(H)-depenent malate dehydrogenase complexed with NADPH | 分子名称: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Malate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | 著者 | Tomita, T, Fushinobu, S, Kuzuyama, T, Nishiyama, M. | 登録日 | 2004-12-10 | 公開日 | 2005-08-02 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | 主引用文献 | Crystal structure of NAD-dependent malate dehydrogenase complexed with NADP(H) Biochem.Biophys.Res.Commun., 334, 2005
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1J3Q
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![BU of 1j3q by Molmil](/molmil-images/mine/1j3q) | Crystal structure of Thermococcus litoralis phosphogrucose isomerase soaked with FeSO4 | 分子名称: | FE (III) ION, Phosphoglucose Isomerase | 著者 | Jeong, J.-J, Fushinobu, S, Ito, S, Hidaka, M, Shoun, H, Wakagi, T. | 登録日 | 2003-02-11 | 公開日 | 2004-02-24 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | Crystal structure of a novel cupin-type phosphoglucose isomerase To be Published
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1J3R
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![BU of 1j3r by Molmil](/molmil-images/mine/1j3r) | Crystal structure of Thermococcus litoralis phosphogrucose isomerase complexed with gluconate-6-phosphate | 分子名称: | 6-PHOSPHOGLUCONIC ACID, FE (III) ION, Phosphoglucose Isomerase | 著者 | Jeong, J.-J, Fushinobu, S, Ito, S, Hidaka, M, Shoun, H, Wakagi, T. | 登録日 | 2003-02-11 | 公開日 | 2004-02-24 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.18 Å) | 主引用文献 | Crystal structure of a novel cupin-type phosphoglucose isomerase To be Published
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8HHV
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![BU of 8hhv by Molmil](/molmil-images/mine/8hhv) | endo-alpha-D-arabinanase EndoMA1 from Microbacterium arabinogalactanolyticum | 分子名称: | CALCIUM ION, GLYCEROL, SODIUM ION, ... | 著者 | Nakashima, C, Li, J, Arakawa, T, Yamada, C, Ishiwata, A, Fujita, K, Fushinobu, S. | 登録日 | 2022-11-17 | 公開日 | 2023-08-16 | 最終更新日 | 2023-09-27 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Identification and characterization of endo-alpha-, exo-alpha-, and exo-beta-D-arabinofuranosidases degrading lipoarabinomannan and arabinogalactan of mycobacteria. Nat Commun, 14, 2023
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7DIF
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![BU of 7dif by Molmil](/molmil-images/mine/7dif) | GH127 beta-L-arabinofuranosidase HypBA1 covalently complexed with beta-L-arabinofuranose-configured cyclophellitol at 1.75-angstrom resolution | 分子名称: | (1S,2S,3R,4R)-3-(hydroxymethyl)cyclopentane-1,2,4-triol, Non-reducing end beta-L-arabinofuranosidase, POTASSIUM ION, ... | 著者 | Amaki, S, McGregor, N.G.S, Arakawa, T, Yamada, C, Borlandelli, V, Overkleeft, H.S, Davies, G.J, Fushinobu, S. | 登録日 | 2020-11-19 | 公開日 | 2021-01-27 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | 主引用文献 | Cysteine Nucleophiles in Glycosidase Catalysis: Application of a Covalent beta-l-Arabinofuranosidase Inhibitor. Angew.Chem.Int.Ed.Engl., 60, 2021
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