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3LLH
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BU of 3llh by Molmil
Crystal structure of the first dsRBD of TAR RNA-binding protein 2
分子名称: MALONATE ION, RISC-loading complex subunit TARBP2
著者Yamashita, S, Kawazoe, M, Takemoto, C, Sekine, S, Wakiyama, M, Yokoyama, S.
登録日2010-01-29
公開日2010-12-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献The structures of dsRBDs of human TRBP
To be Published
3HPD
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BU of 3hpd by Molmil
Structure of hydroxyethylthiazole kinase protein from pyrococcus horikoshii OT3
分子名称: Hydroxyethylthiazole kinase, PHOSPHATE ION
著者Jeyakanthan, J, Thamotharan, S, Kuramitsu, S, Yokoyama, S, Tahirov, T.H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-06-04
公開日2009-06-16
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structure of Hydroxyethylthiazole Kinase Protein from Pyrococcus Horikoshii Ot3
To be Published
5X51
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BU of 5x51 by Molmil
RNA Polymerase II from Komagataella Pastoris (Type-3 crystal)
分子名称: DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II subunit, ...
著者Ehara, H, Umehara, T, Sekine, S, Yokoyama, S.
登録日2017-02-14
公開日2017-05-17
実験手法X-RAY DIFFRACTION (6.996 Å)
主引用文献Crystal structure of RNA polymerase II from Komagataella pastoris
Biochem. Biophys. Res. Commun., 487, 2017
5X50
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BU of 5x50 by Molmil
RNA Polymerase II from Komagataella Pastoris (Type-2 crystal)
分子名称: DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II subunit, ...
著者Ehara, H, Umehara, T, Sekine, S, Yokoyama, S.
登録日2017-02-14
公開日2017-05-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (4.293 Å)
主引用文献Crystal structure of RNA polymerase II from Komagataella pastoris
Biochem. Biophys. Res. Commun., 487, 2017
3I7V
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BU of 3i7v by Molmil
Crystal structure of AP4A hydrolase complexed with AP4A (ATP) (aq_158) from Aquifex aeolicus Vf5
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, AP4A hydrolase, ...
著者Jeyakanthan, J, Kanaujia, S.P, Nakagawa, N, Sekar, K, Kuramitsu, S, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-07-09
公開日2009-07-21
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Free and ATP-bound structures of Ap(4)A hydrolase from Aquifex aeolicus V5
Acta Crystallogr.,Sect.D, 66, 2010
5XAX
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BU of 5xax by Molmil
Parallel homodimer structures of the extracellular domains of the voltage-gated sodium channel beta4 subunit explain its role in cell-cell adhesion
分子名称: GLYCEROL, Sodium channel subunit beta-4
著者Shimizu, H, Yokoyama, S.
登録日2017-03-15
公開日2017-07-05
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.903 Å)
主引用文献Parallel homodimer structures of the extracellular domains of the voltage-gated sodium channel beta 4 subunit explain its role in cell-cell adhesion
J. Biol. Chem., 292, 2017
3I7U
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BU of 3i7u by Molmil
Crystal structure of AP4A hydrolase (aq_158) from Aquifex aeolicus VF5
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, AP4A hydrolase, ...
著者Jeyakanthan, J, Kanaujia, S.P, Nakagawa, N, Sekar, K, Kuramitsu, S, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-07-09
公開日2009-07-21
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Free and ATP-bound structures of Ap(4)A hydrolase from Aquifex aeolicus V5
Acta Crystallogr.,Sect.D, 66, 2010
5XAW
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BU of 5xaw by Molmil
Parallel homodimer structures of voltage-gated sodium channel beta4 for cell-cell adhesion
分子名称: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, GLYCEROL, Sodium channel subunit beta-4, ...
著者Shimizu, H, Yokoyama, S.
登録日2017-03-15
公開日2017-07-05
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.101 Å)
主引用文献Parallel homodimer structures of the extracellular domains of the voltage-gated sodium channel beta 4 subunit explain its role in cell-cell adhesion
J. Biol. Chem., 292, 2017
5X4Z
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BU of 5x4z by Molmil
RNA Polymerase II from Komagataella Pastoris (Type-1 crystal)
分子名称: DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II subunit, ...
著者Ehara, H, Umehara, T, Sekine, S, Yokoyama, S.
登録日2017-02-14
公開日2017-05-17
実験手法X-RAY DIFFRACTION (7.8 Å)
主引用文献Crystal structure of RNA polymerase II from Komagataella pastoris
Biochem. Biophys. Res. Commun., 487, 2017
4YVH
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BU of 4yvh by Molmil
Crystal Structure of H. influenzae TrmD in complex with sinefungin
分子名称: SINEFUNGIN, tRNA (guanine-N(1)-)-methyltransferase
著者Yoshida, K, Ito, T, Yokoyama, S.
登録日2015-03-20
公開日2015-07-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD.
Proc.Natl.Acad.Sci.USA, 112, 2015
3JQM
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BU of 3jqm by Molmil
Binding of 5'-GTP to molybdenum cofactor biosynthesis protein MoaC from Thermus theromophilus HB8
分子名称: 1,2-ETHANEDIOL, CITRATE ANION, DI(HYDROXYETHYL)ETHER, ...
著者Kanaujia, S.P, Jeyakanthan, J, Nakagawa, N, Sekar, K, Shinkai, A, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-09-07
公開日2010-06-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structures of apo and GTP-bound molybdenum cofactor biosynthesis protein MoaC from Thermus thermophilus HB8
Acta Crystallogr.,Sect.D, 66, 2010
4YVG
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BU of 4yvg by Molmil
Crystal Structure of H. influenzae TrmD in complex with AdoMet
分子名称: S-ADENOSYLMETHIONINE, tRNA (guanine-N(1)-)-methyltransferase
著者Ito, T, Yokoyama, S.
登録日2015-03-20
公開日2015-07-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.549 Å)
主引用文献Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD.
Proc.Natl.Acad.Sci.USA, 112, 2015
4YVJ
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BU of 4yvj by Molmil
Crystal Structure of H. influenzae TrmD in complex with sinefungin and tRNA variant (G36U)
分子名称: SINEFUNGIN, tRNA, tRNA (guanine-N(1)-)-methyltransferase
著者Yoshida, K, Ito, T, Yokoyama, S.
登録日2015-03-20
公開日2015-07-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD.
Proc.Natl.Acad.Sci.USA, 112, 2015
4YVK
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BU of 4yvk by Molmil
Crystal Structure of H. influenzae TrmD in complex with sinefungin and tRNA variant (G36C)
分子名称: SINEFUNGIN, tRNA, tRNA (guanine-N(1)-)-methyltransferase
著者Yoshida, K, Ito, T, Yokoyama, S.
登録日2015-03-20
公開日2015-07-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.002 Å)
主引用文献Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD.
Proc.Natl.Acad.Sci.USA, 112, 2015
4YVI
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BU of 4yvi by Molmil
Crystal Structure of H. influenzae TrmD in complex with sinefungin and tRNA
分子名称: SINEFUNGIN, tRNA, tRNA (guanine-N(1)-)-methyltransferase
著者Yoshida, K, Ito, T, Yokoyama, S.
登録日2015-03-20
公開日2015-07-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.01 Å)
主引用文献Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD.
Proc.Natl.Acad.Sci.USA, 112, 2015
2YSA
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BU of 2ysa by Molmil
Solution structure of the zinc finger CCHC domain from the human retinoblastoma-binding protein 6 (Retinoblastoma-binding Q protein 1, RBQ-1)
分子名称: Retinoblastoma-binding protein 6, ZINC ION
著者Ohnishi, S, Sato, M, Tochio, N, Koshiba, S, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-03
公開日2007-10-09
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the zinc finger CCHC domain from the human retinoblastoma-binding protein 6 (Retinoblastoma-binding Q protein 1, RBQ-1)
To be Published
2YSC
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BU of 2ysc by Molmil
Solution structure of the WW domain from the human amyloid beta A4 precursor protein-binding family B member 3, APBB3
分子名称: Amyloid beta A4 precursor protein-binding family B member 3
著者Ohnishi, S, Yoneyama, M, Koshiba, S, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-03
公開日2008-04-08
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the WW domain from the human amyloid beta A4 precursor protein-binding family B member 3, APBB3
To be Published
2YSI
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BU of 2ysi by Molmil
Solution structure of the first WW domain from the mouse transcription elongation regulator 1, transcription factor CA150
分子名称: Transcription elongation regulator 1
著者Ohnishi, S, Li, H, Koshiba, S, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-03
公開日2007-10-09
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the first WW domain from the mouse transcription elongation regulator 1, transcription factor CA150
To be Published
2YS8
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BU of 2ys8 by Molmil
Solution structure of the DnaJ-like domain from human ras-associated protein Rap1
分子名称: Rab-related GTP-binding protein RabJ
著者Ohnishi, S, Sato, M, Koshiba, S, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-03
公開日2007-10-09
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the DnaJ-like domain from human ras-associated protein Rap1
To be Published
2YSE
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BU of 2yse by Molmil
Solution structure of the second WW domain from the human membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1. MAGI-1
分子名称: Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1
著者Ohnishi, S, Sato, M, Koshiba, S, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-03
公開日2007-10-09
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the second WW domain from the human membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1. MAGI-1
To be Published
2YSD
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BU of 2ysd by Molmil
Solution structure of the first WW domain from the human membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1. MAGI-1
分子名称: Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1
著者Ohnishi, S, Tochio, N, Koshiba, S, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-03
公開日2007-10-09
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the first WW domain from the human membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1. MAGI-1
To be Published
5WRM
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BU of 5wrm by Molmil
Mu2 subunit of the clathrin adaptor complex AP2 in complex with IRS-1 Y658 peptide
分子名称: AP-2 complex subunit mu, Insulin receptor substrate 1
著者Yoneyama, Y, Niwa, H, Umehara, T, Yokoyama, S, Hakuno, F, Takahashi, S.
登録日2016-12-02
公開日2017-12-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.597 Å)
主引用文献IRS-1 acts as an endocytic regulator of IGF-I receptor to facilitate sustained IGF signaling
Elife, 7, 2018
2YSF
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BU of 2ysf by Molmil
Solution structure of the fourth WW domain from the human E3 ubiquitin-protein ligase Itchy homolog, ITCH
分子名称: E3 ubiquitin-protein ligase Itchy homolog
著者Ohnishi, S, Li, H, Koshiba, S, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-03
公開日2007-10-09
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the fourth WW domain from the human E3 ubiquitin-protein ligase Itchy homolog, ITCH
To be Published
2YS9
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structure of the third Homeodomain from the human homeobox and leucine zipper protein, Homez
分子名称: Homeobox and leucine zipper protein Homez
著者Ohnishi, S, Tomizawa, T, Koshiba, S, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-03
公開日2007-10-09
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献structure of the third Homeodomain from the human homeobox and leucine zipper protein, Homez
To be Published
3HJN
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BU of 3hjn by Molmil
Crystal structure of thymidylate kinase in complex with dTDP and ADP from Thermotoga maritima
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, THYMIDINE-5'-DIPHOSPHATE, ...
著者Yoshikawa, S, Nakagawa, N, Shirouzu, M, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-05-22
公開日2009-06-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of thymidylate kinase in complex with dTDP and ADP from Thermotoga maritima
To be Published

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