Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2Y7I
DownloadVisualize
BU of 2y7i by Molmil
Structural basis for high arginine specificity in Salmonella typhimurium periplasmic binding protein STM4351.
分子名称: ACETATE ION, ARGININE, GLYCEROL, ...
著者Stamp, A.L, Owen, P, El Omari, K, Lockyer, M, Lamb, H.K, Charles, I.G, Hawkins, A.R, Stammers, D.K.
登録日2011-01-31
公開日2011-05-11
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystallographic and Microcalorimetric Analyses Reveal the Structural Basis for High Arginine Specificity in the Salmonella Enterica Serovar Typhimurium Periplasmic Binding Protein Stm4351.
Proteins, 79, 2011
2YHM
DownloadVisualize
BU of 2yhm by Molmil
Structure of respiratory syncytial virus nucleocapsid protein, P212121 crystal form
分子名称: NUCLEOPROTEIN, RNA
著者El Omari, K, Dhaliwal, B, Ren, J, Abrescia, N.G.A, Lockyer, M, Powell, K.L, Hawkins, A.R, Stammers, D.K.
登録日2011-05-04
公開日2012-01-25
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Structures of Respiratory Syncytial Virus Nucleocapsid Protein from Two Crystal Forms: Details of Potential Packing Interactions in the Native Helical Form.
Acta Crystallogr.,Sect.F, 67, 2011
4KFZ
DownloadVisualize
BU of 4kfz by Molmil
Crystal structure of LMO2 and anti-LMO2 VH complex
分子名称: Anti-LMO2 VH, LMO-2, ZINC ION
著者Sewell, H, Tanaka, T, El Omari, K, Cruz-Migoni, A, Mancini, E.J, Fuentes-Fernandez, N, Chambers, J, Rabbitts, T.H.
登録日2013-04-28
公開日2014-01-22
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Conformational flexibility of the oncogenic protein LMO2 primes the formation of the multi-protein transcription complex.
Sci Rep, 4, 2014
6VKF
DownloadVisualize
BU of 6vkf by Molmil
CCHFV GP38 (IbAr10200)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GP38
著者Mishra, A.K, McLellan, J.S.
登録日2020-01-20
公開日2020-02-05
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.524 Å)
主引用文献Structure and Characterization of Crimean-Congo Hemorrhagic Fever Virus GP38.
J.Virol., 94, 2020
6EYT
DownloadVisualize
BU of 6eyt by Molmil
Crystal structure of the Salmonella effector SseK3 in complex with UDP-GlcNAc and Manganese
分子名称: 2-acetamido-2-deoxy-alpha-D-glucopyranose, IODIDE ION, MANGANESE (II) ION, ...
著者Esposito, D, Rittinger, K.
登録日2017-11-13
公開日2018-02-28
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Structural basis for the glycosyltransferase activity of theSalmonellaeffector SseK3.
J. Biol. Chem., 293, 2018
5OFR
DownloadVisualize
BU of 5ofr by Molmil
Structure of the antibacterial peptide ABC transporter McjD in a high energy outward occluded intermediate state
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Microcin-J25 export ATP-binding/permease protein McjD, ...
著者Beis, K, Bountra, K.
登録日2017-07-11
公開日2017-09-06
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Structural basis for antibacterial peptide self-immunity by the bacterial ABC transporter McjD.
EMBO J., 36, 2017
5OFP
DownloadVisualize
BU of 5ofp by Molmil
Structure of the antibacterial peptide ABC transporter McjD in an apo inward occluded conformation
分子名称: Microcin-J25 export ATP-binding/permease protein McjD
著者Beis, K, Choudhury, H.G.
登録日2017-07-11
公開日2017-09-06
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (4.71 Å)
主引用文献Structural basis for antibacterial peptide self-immunity by the bacterial ABC transporter McjD.
EMBO J., 36, 2017
6EYR
DownloadVisualize
BU of 6eyr by Molmil
Crystal structure of the salmonella effector SseK3
分子名称: Type III secretion system effector protein
著者Esposito, D, Rittinger, K.
登録日2017-11-13
公開日2018-02-28
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for the glycosyltransferase activity of theSalmonellaeffector SseK3.
J. Biol. Chem., 293, 2018
5FKI
DownloadVisualize
BU of 5fki by Molmil
Pseudorabies virus (PrV) nuclear egress complex proteins fitted as a hexameric lattice into a sub-tomogram average derived from focused- ion beam milled lamellae electron cryo-microscopic data
分子名称: CHLORIDE ION, UL31, UL34 protein, ...
著者Hagen, C, Dent, K.C, Zeev Ben Mordehai, T, Vasishtan, D, Antonin, W, Mettenleiter, T.C, Gruenewald, K.
登録日2015-10-16
公開日2016-03-16
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (35 Å)
主引用文献Crystal Structure of the Herpesvirus Nuclear Egress Complex Provides Insights Into Inner Nuclear Membrane Remodelling
Cell Rep., 13, 2015
7ZK1
DownloadVisualize
BU of 7zk1 by Molmil
Crystal structure of cystinosin from Arabidopsis thaliana bound to sybody and nanobody
分子名称: Cystinosin homolog, Llama derived nanobody, Synthetic nanobody (Sybody)
著者Loebel, M, Newstead, S, Omari, K.E.
登録日2022-04-12
公開日2022-08-31
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Structural basis for proton coupled cystine transport by cystinosin.
Nat Commun, 13, 2022
8BGI
DownloadVisualize
BU of 8bgi by Molmil
GABA-A receptor a5 homomer - a5V1 - Flumazenil
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Gamma-aminobutyric acid receptor subunit alpha-5, Pregnanolone, ...
著者Miller, P.S, Malinauskas, T.M, Omari, K.E, Aricescu, A.R.
登録日2022-10-27
公開日2023-11-08
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.56 Å)
主引用文献The molecular basis of drug selectivity for alpha 5 subunit-containing GABA A receptors.
Nat.Struct.Mol.Biol., 30, 2023
8BHG
DownloadVisualize
BU of 8bhg by Molmil
GABA-A receptor a5 heteromer - a5V2 - Bretazenil
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Bretazenil, DECYL-BETA-D-MALTOPYRANOSIDE, ...
著者Miller, P.S, Malinauskas, T.M, Omari, K.E, Aricescu, A.R.
登録日2022-10-31
公開日2023-11-15
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.39 Å)
主引用文献The molecular basis of drug selectivity for alpha 5 subunit-containing GABA A receptors.
Nat.Struct.Mol.Biol., 30, 2023
3ZEU
DownloadVisualize
BU of 3zeu by Molmil
Structure of a Salmonella typhimurium YgjD-YeaZ heterodimer bound to ATPgammaS
分子名称: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ...
著者Nichols, C.E, Lamb, H.K, Thompson, P, El Omari, K, Lockyer, M, Charles, I, Hawkins, A.R, Stammers, D.K.
登録日2012-12-07
公開日2013-03-20
最終更新日2017-03-29
実験手法X-RAY DIFFRACTION (1.653 Å)
主引用文献Crystal Structure of the Dimer of Two Essential Salmonella Typhimurium Proteins, Ygjd & Yeaz and Calorimetric Evidence for the Formation of a Ternary Ygjd-Yeaz-Yjee Complex.
Protein Sci., 22, 2013
3ZET
DownloadVisualize
BU of 3zet by Molmil
Structure of a Salmonella typhimurium YgjD-YeaZ heterodimer.
分子名称: ADENOSINE MONOPHOSPHATE, CADMIUM ION, PROBABLE TRNA THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN GCP, ...
著者Nichols, C.E, Lamb, H.K, Thompson, P, El Omari, K, Lockyer, M, Charles, I, Hawkins, A.R, Stammers, D.K.
登録日2012-12-07
公開日2013-03-20
最終更新日2013-05-08
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Crystal Structure of the Dimer of Two Essential Salmonella Typhimurium Proteins, Ygjd & Yeaz and Calorimetric Evidence for the Formation of a Ternary Ygjd-Yeaz-Yjee Complex.
Protein Sci., 22, 2013
7PEO
DownloadVisualize
BU of 7peo by Molmil
Structure of the Caulobacter crescentus S-layer protein RsaA N-terminal domain bound to LPS and soaked with Holmium
分子名称: 4-acetamido-4,6-dideoxy-alpha-D-mannopyranose-(1-3)-4-acetamido-4,6-dideoxy-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-3)-4-acetamido-4,6-dideoxy-alpha-D-mannopyranose-(1-3)-4-acetamido-4,6-dideoxy-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-3)-4-acetamido-4,6-dideoxy-alpha-D-mannopyranose-(1-3)-4-acetamido-4,6-dideoxy-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-3)-4-acetamido-4,6-dideoxy-alpha-D-mannopyranose-(1-3)-4-acetamido-4,6-dideoxy-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose, CALCIUM ION, HOLMIUM ATOM, ...
著者von Kugelgen, A, Bharat, T.A.M.
登録日2021-08-11
公開日2021-12-01
最終更新日2022-02-16
実験手法ELECTRON MICROSCOPY (4.37 Å)
主引用文献High-resolution mapping of metal ions reveals principles of surface layer assembly in Caulobacter crescentus cells.
Structure, 30, 2022
7ACV
DownloadVisualize
BU of 7acv by Molmil
SLPL/HID (LMW SLP complex with HMW SLP interacting domain - HID) from C. difficile (R7404 strain)
分子名称: HID - interacting domain of SLP HMW, LMW SLP
著者Barwinska-Sendra, A, Lanzoni-Mangutchi, P, Salgado, P.S.
登録日2020-09-11
公開日2022-03-09
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure and assembly of the S-layer in C. difficile.
Nat Commun, 13, 2022
7ACW
DownloadVisualize
BU of 7acw by Molmil
LID/HID (LMW SLP and HMW SLP interacting domains) from C. difficile (R7404 strain)
分子名称: S-layer protein
著者Barwinska-Sendra, A, Lanzoni-Mangutchi, P, Basle, A, Salgado, P.S.
登録日2020-09-11
公開日2022-03-09
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure and assembly of the S-layer in C. difficile.
Nat Commun, 13, 2022
7ACY
DownloadVisualize
BU of 7acy by Molmil
H/L (SLPH/SLPL) complex from C. difficile (CD630 strain)
分子名称: S-layer protein, SULFATE ION
著者Lanzoni-Mangutchi, P, Barwinska-Sendra, A, Salgado, P.S.
登録日2020-09-11
公開日2022-03-09
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Structure and assembly of the S-layer in C. difficile.
Nat Commun, 13, 2022
7ACZ
DownloadVisualize
BU of 7acz by Molmil
RdeltaD2 H/L (LMW SLP/HMW SLP) complex from C. difficile SlpA (R20291 strain)
分子名称: SLPH (HMW SLP), SLPL deltaD2 (LMW SLP D2 truncation),SLPL deltaD2 (LMW SLP D2 truncation)
著者Lanzoni-Mangutchi, P, Barwinska-Sendra, A, Salgado, P.S.
登録日2020-09-11
公開日2022-03-09
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Structure and assembly of the S-layer in C. difficile.
Nat Commun, 13, 2022
6JJI
DownloadVisualize
BU of 6jji by Molmil
Crystal structure of a two-quartet RNA parallel G-quadruplex complexed with the porphyrin TMPyP4 (1:1)
分子名称: (1Z,4Z,9Z,15Z)-5,10,15,20-tetrakis(1-methylpyridin-1-ium-4-yl)-21,23-dihydroporphyrin, POTASSIUM ION, RNA (5'-R(*GP*GP*CP*UP*CP*GP*GP*CP*GP*GP*CP*GP*GP*A)-3')
著者Zhang, Y.S, Parkinson, G.N, Wei, D.G.
登録日2019-02-25
公開日2020-02-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Native de novo structural determinations of non-canonical nucleic acid motifs by X-ray crystallography at long wavelengths.
Nucleic Acids Res., 48, 2020
8ENB
DownloadVisualize
BU of 8enb by Molmil
Crystal structure of LGR ligand alpha2/beta5 from C. elegans in crystal form 2
分子名称: Bursicon, Cys_knot domain-containing protein
著者Gong, Z, Hendrickson, W.A.
登録日2022-09-29
公開日2023-01-11
最終更新日2023-04-26
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Crystal structure of LGR ligand alpha2/beta5 from Caenorhabditis elegans with implications for the evolution of glycoprotein hormones
Proc Natl Acad Sci U S A, 120, 2023
8END
DownloadVisualize
BU of 8end by Molmil
Crystal structure of LGR ligand alpha2/beta5 from C. elegans in crystal form 1 (SeMet)
分子名称: Bursicon, Cys_knot domain-containing protein
著者Gong, Z, Hendrickson, W.A.
登録日2022-09-29
公開日2023-01-11
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.54 Å)
主引用文献Crystal structure of LGR ligand alpha2/beta5 from Caenorhabditis elegans with implications for the evolution of glycoprotein hormones
Proc Natl Acad Sci U S A, 120, 2023
8ENF
DownloadVisualize
BU of 8enf by Molmil
Crystal structure of LGR ligand alpha2/beta5 from C. elegans in crystal form 1 (native)
分子名称: Bursicon, Cys_knot domain-containing protein
著者Gong, Z, Hendrickson, W.A.
登録日2022-09-29
公開日2023-01-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3.29 Å)
主引用文献Crystal structure of LGR ligand alpha2/beta5 from Caenorhabditis elegans with implications for the evolution of glycoprotein hormones
Proc Natl Acad Sci U S A, 120, 2023
7QGQ
DownloadVisualize
BU of 7qgq by Molmil
Extended H/L (SLPH/SLPL) complex from C. difficile (CD630 strain) fit into R20291 S-layer negative stain map
分子名称: Precursor of the S-layer proteins
著者Banerji, O, Wilson, J.S, Bullough, P.A.
登録日2021-12-09
公開日2022-04-06
実験手法ELECTRON CRYSTALLOGRAPHY
主引用文献Structure and assembly of the S-layer in C. difficile.
Nat Commun, 13, 2022
6QNR
DownloadVisualize
BU of 6qnr by Molmil
70S ribosome elongation complex (EC) with experimentally assigned potassium ions
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Rozov, A, Khusainov, I, Yusupov, M, Yusupova, G.
登録日2019-02-11
公開日2019-06-19
最終更新日2024-04-24
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction.
Nat Commun, 10, 2019

220472

件を2024-05-29に公開中

PDB statisticsPDBj update infoContact PDBjnumon