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5WKZ
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BU of 5wkz by Molmil
VH1-69 germline antibody predicted from CR6261
分子名称: Immunoglobulin heavy variable 1-69D,IgG H chain, Lambda-chain (AA -20 to 215), SULFATE ION
著者Lang, S, Lee, P.S.
登録日2017-07-25
公開日2018-08-01
最終更新日2019-12-11
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Anti-idiotypic antibody K1-18 engages VH1-69 precursor and affinity-matured, anti-stem antibodies through mimicry of the HA stem
To Be Published
5XWD
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BU of 5xwd by Molmil
Crystal structure of the complex of 059-152-Fv and EGFR-ECD
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Epidermal growth factor receptor, ...
著者Matsuda, T, Ito, T, Shirouzu, M.
登録日2017-06-29
公開日2018-02-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.894 Å)
主引用文献Cell-free synthesis of functional antibody fragments to provide a structural basis for antibody-antigen interaction
PLoS ONE, 13, 2018
3AJ9
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BU of 3aj9 by Molmil
X-ray analysis of Crystal of Proteinase K Obtained from D2O Solution Using PEG 8000
分子名称: CALCIUM ION, GLYCEROL, Proteinase K
著者Chatake, T, Ishikawa, T, Morimoto, Y.
登録日2010-05-27
公開日2011-06-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献High-resolution X-ray study of the effects of deuteration on crystal growth and the crystal structure of proteinase K
Acta Crystallogr.,Sect.F, 67, 2011
3AJ8
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BU of 3aj8 by Molmil
X-ray analysis of Crystal of Proteinase K Obtained from H2O Solution Using PEG 8000
分子名称: CALCIUM ION, GLYCEROL, Proteinase K
著者Chatake, T, Ishikawa, T, Morimoto, Y.
登録日2010-05-27
公開日2011-06-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献High-resolution X-ray study of the effects of deuteration on crystal growth and the crystal structure of proteinase K
Acta Crystallogr.,Sect.F, 67, 2011
8GNN
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BU of 8gnn by Molmil
Crystal structure of the human RAD9-RAD1-HUS1-RAD17 complex
分子名称: Cell cycle checkpoint control protein RAD9A, Cell cycle checkpoint protein RAD1, Cell cycle checkpoint protein RAD17, ...
著者Hara, K, Nagata, K, Iida, N, Hashimoto, H.
登録日2022-08-24
公開日2023-03-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.119 Å)
主引用文献The 9-1-1 DNA clamp subunit RAD1 forms specific interactions with clamp loader RAD17, revealing functional implications for binding-protein RHINO.
J.Biol.Chem., 299, 2023
1UAO
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BU of 1uao by Molmil
NMR Structure of designed protein, Chignolin, consisting of only ten amino acids (Ensembles)
分子名称: Chignolin
著者Honda, S, Yamasaki, K.
登録日2003-03-13
公開日2004-04-13
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献10 residue folded peptide designed by segment statistics
Structure, 12, 2004
7WYR
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BU of 7wyr by Molmil
Crystal structure of Cypovirus Polyhedra mutant fused with CLN025
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Polyhedrin fused with CLN025
著者Kojima, M, Abe, S, Hirata, K, Yamashita, K, Ueno, T.
登録日2022-02-16
公開日2023-02-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Engineering of an in-cell protein crystal for fastening a metastable conformation of a target miniprotein.
Biomater Sci, 11, 2023
1V3Z
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BU of 1v3z by Molmil
Crystal Structure of Acylphosphatase from Pyrococcus horikoshii
分子名称: Acylphosphatase, CHLORIDE ION, POTASSIUM ION
著者Miyazono, K, Tanokura, M.
登録日2003-11-07
公開日2004-11-30
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Crystal structure of acylphosphatase from hyperthermophilic archaeon Pyrococcus horikoshii OT3
PROC.JPN.ACAD.,SER.B, 80, 2004
1VGL
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BU of 1vgl by Molmil
Crystal structure of tetrameric KaiB from T.elongatus BP-1
分子名称: Circadian clock protein kaiB, MERCURY (II) ION
著者Iwase, R, Imada, K, Hayashi, F, Uzumaki, T, Namba, K, Ishiura, M.
登録日2004-04-27
公開日2005-08-16
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Functionally important substructures of circadian clock protein KaiB in a unique tetramer complex.
J.Biol.Chem., 280, 2005
2EB2
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BU of 2eb2 by Molmil
Crystal structure of mutated EGFR kinase domain (G719S)
分子名称: Epidermal growth factor receptor
著者Yoshikawa, S, Kukimoto-Niino, M, Chen, L, Liu, Z.J, Wang, B.C, Shirouzu, M, Senba, K, Yamamoto, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-02-06
公開日2008-02-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural basis for the altered drug sensitivities of non-small cell lung cancer-associated mutants of human epidermal growth factor receptor
Oncogene, 2012
2EB3
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BU of 2eb3 by Molmil
Crystal structure of mutated EGFR kinase domain (L858R) in complex with AMPPNP
分子名称: Epidermal growth factor receptor, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
著者Yoshikawa, S, Kukimoto-Niino, M, Shirouzu, M, Senba, K, Yamamoto, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-02-06
公開日2008-02-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.84 Å)
主引用文献Structural basis for the altered drug sensitivities of non-small cell lung cancer-associated mutants of human epidermal growth factor receptor
Oncogene, 2012
2DPN
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BU of 2dpn by Molmil
Crystal Structure of the glycerol kinase from Thermus thermophilus HB8
分子名称: Glycerol kinase
著者Asada, Y, Sugahara, M, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-05-12
公開日2006-11-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Nucleant-mediated protein crystallization with the application of microporous synthetic zeolites.
Acta Crystallogr.,Sect.D, 64, 2008
2E5A
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BU of 2e5a by Molmil
Crystal Structure of Bovine Lipoyltransferase in Complex with Lipoyl-AMP
分子名称: 5'-O-[(R)-({5-[(3R)-1,2-DITHIOLAN-3-YL]PENTANOYL}OXY)(HYDROXY)PHOSPHORYL]ADENOSINE, ACETIC ACID, Lipoyltransferase 1, ...
著者Fujiwara, K, Hosaka, H, Matsuda, M, Suzuki, M, Nakagawa, A.
登録日2006-12-19
公開日2007-09-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of bovine Lipoyltransferase in complex with lipoyl-AMP
J.Mol.Biol., 371, 2007
1WU1
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BU of 1wu1 by Molmil
Factor Xa in complex with the inhibitor 4-[(5-chloroindol-2-yl)sulfonyl]-2-(2-methylpropyl)-1-[[5-(pyridin-4-yl) pyrimidin-2-yl]carbonyl]piperazine
分子名称: 5-CHLORO-2-({3-ISOBUTYL-4-[(5-PYRIDIN-4-YLPYRIMIDIN-2-YL)CARBONYL]PIPERAZIN-1-YL}SULFONYL)-1H-INDOLE, CALCIUM ION, Coagulation factor X, ...
著者Suzuki, M.
登録日2004-11-29
公開日2005-11-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Design, synthesis, and biological activity of non-basic compounds as factor Xa inhibitors: SAR study of S1 and aryl binding sites
Bioorg.Med.Chem., 13, 2005
3A2Q
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BU of 3a2q by Molmil
Structure of 6-aminohexanoate cyclic dimer hydrolase complexed with substrate
分子名称: 6-AMINOHEXANOIC ACID, 6-aminohexanoate-cyclic-dimer hydrolase, GLYCEROL
著者Shibata, N.
登録日2009-05-26
公開日2009-11-03
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献X-ray crystallographic analysis of the 6-aminohexanoate cyclic dimer hydrolase: catalytic mechanism and evolution of an enzyme responsible for nylon-6 byproduct degradation
J.Biol.Chem., 285, 2010
2EC7
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BU of 2ec7 by Molmil
Solution Structure of Human Immunodificiency Virus Type-2 Nucleocapsid Protein
分子名称: Gag polyprotein (Pr55Gag), ZINC ION
著者Matsui, T, Kodera, Y, Tanaka, T, Endoh, H, Tanaka, H, Miyauchi, E, Komatsu, H, Kohno, T, Maeda, T.
登録日2007-02-10
公開日2008-02-19
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献The RNA recognition mechanism of human immunodeficiency virus (HIV) type 2 NCp8 is different from that of HIV-1 NCp7
Biochemistry, 48, 2009
3A2P
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BU of 3a2p by Molmil
Structure of 6-aminohexanoate cyclic dimer hydrolase
分子名称: 6-aminohexanoate-cyclic-dimer hydrolase, GLYCEROL
著者Shibata, N.
登録日2009-05-26
公開日2009-11-03
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献X-ray crystallographic analysis of the 6-aminohexanoate cyclic dimer hydrolase: catalytic mechanism and evolution of an enzyme responsible for nylon-6 byproduct degradation
J.Biol.Chem., 285, 2010
2ELD
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BU of 2eld by Molmil
Mutant L160M structure of PH0725 from Pyrococcus horikoshii OT3
分子名称: GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, SODIUM ION, ...
著者Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-27
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Mutant L160M structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
5YXM
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BU of 5yxm by Molmil
Crystal structure of Chlamydomonas Outer Arm Dynein Light Chain 1
分子名称: Dynein light chain 1, axonemal, PHOSPHATE ION
著者Toda, A, Tanaka, H, Nishikawa, Y, Yagi, T, Kurisu, G.
登録日2017-12-06
公開日2018-03-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.545 Å)
主引用文献Structural atlas of dynein motors at atomic resolution.
Biophys Rev, 10, 2018
2EMR
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BU of 2emr by Molmil
Mutant L65M structure of PH0725 from Pyrococcus horikoshii OT3
分子名称: Probable diphthine synthase, S-ADENOSYL-L-HOMOCYSTEINE, SODIUM ION
著者Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-28
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Mutant L65M structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2EH4
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BU of 2eh4 by Molmil
Mutant T146M structure of PH0725 from Pyrococcus horikoshii OT3
分子名称: S-ADENOSYL-L-HOMOCYSTEINE, SODIUM ION, diphthine synthase
著者Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-04
公開日2007-09-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Mutant T146M structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2D1J
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BU of 2d1j by Molmil
Factor Xa in complex with the inhibitor 2-[[4-[(5-chloroindol-2-yl)sulfonyl]piperazin-1-yl] carbonyl]thieno[3,2-b]pyridine n-oxide
分子名称: 2-({4-[(5-CHLORO-1H-INDOL-2-YL)SULFONYL]PIPERAZIN-1-YL}CARBONYL)THIENO[3,2-B]PYRIDINE 4-OXIDE, CALCIUM ION, Coagulation factor X, ...
著者Suzuki, M.
登録日2005-08-24
公開日2006-08-24
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Design, synthesis, and biological activity of non-basic compounds as factor Xa inhibitors: SAR study of S1 and aryl binding sites.
Bioorg.Med.Chem., 13, 2005
1WMM
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BU of 1wmm by Molmil
Crystal structure of PH1033 from Pyrococcus horikoshii Ot3
分子名称: Hypothetical UPF0310 protein PH1033
著者Sugahara, M, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-07-12
公開日2005-08-23
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Nucleant-mediated protein crystallization with the application of microporous synthetic zeolites.
Acta Crystallogr.,Sect.D, 64, 2008
2ZBN
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BU of 2zbn by Molmil
Crystal structure of PH1033 from Pyrococcus horikoshii OT3
分子名称: UPF0310 protein PH1033
著者Sugahara, M, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-10-26
公開日2008-04-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Nucleant-mediated protein crystallization with the application of microporous synthetic zeolites.
Acta Crystallogr.,Sect.D, 64, 2008
1TFG
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BU of 1tfg by Molmil
AN UNUSUAL FEATURE REVEALED BY THE CRYSTAL STRUCTURE AT 2.2 ANGSTROMS RESOLUTION OF HUMAN TRANSFORMING GROWTH FACTOR-BETA2
分子名称: TRANSFORMING GROWTH FACTOR, BETA 2
著者Gruetter, M, Schlunegger, M.
登録日1992-11-17
公開日1993-10-31
最終更新日2019-08-14
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献An unusual feature revealed by the crystal structure at 2.2 A resolution of human transforming growth factor-beta 2.
Nature, 358, 1992

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