Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3WQ9
DownloadVisualize
BU of 3wq9 by Molmil
Crystal structure of Hsp90-alpha N-terminal domain in complex with 2-(4-Hydroxy-cyclohexylamino)-4-[5-(4-phenyl-imidazol-1-yl)-isoquinolin-1-yl]-benzamide
分子名称: 2-[(trans-4-hydroxycyclohexyl)amino]-4-[5-(4-phenyl-1H-imidazol-1-yl)isoquinolin-1-yl]benzamide, Heat shock protein HSP 90-alpha
著者Chong, K.T, Yamashita, S, Oshiumi, H, Uno, T, Kitade, M.
登録日2014-01-23
公開日2015-02-25
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Evolution of highly selective Hsp90 / inhibitors by structure and thermodynamics guided design
To be Published
1RDC
DownloadVisualize
BU of 1rdc by Molmil
CRYSTAL STRUCTURES OF RIBONUCLEASE HI ACTIVE SITE MUTANTS FROM ESCHERICHIA COLI
分子名称: RIBONUCLEASE H
著者Katayanagi, K, Morikawa, K.
登録日1993-06-23
公開日1993-10-31
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structures of ribonuclease HI active site mutants from Escherichia coli.
J.Biol.Chem., 268, 1993
7EQ9
DownloadVisualize
BU of 7eq9 by Molmil
Cryo-EM structure of designed protein nanoparticle TIP60 (Truncated Icosahedral Protein composed of 60-mer fusion proteins)
分子名称: TIP60
著者Obata, J, Kawakami, N, Tsutsumi, A, Miyamoto, K, Kikkawa, M, Arai, R.
登録日2021-04-30
公開日2021-09-15
最終更新日2023-11-29
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Icosahedral 60-meric porous structure of designed supramolecular protein nanoparticle TIP60.
Chem.Commun.(Camb.), 57, 2021
1RDA
DownloadVisualize
BU of 1rda by Molmil
CRYSTAL STRUCTURES OF RIBONUCLEASE HI ACTIVE SITE MUTANTS FROM ESCHERICHIA COLI
分子名称: RIBONUCLEASE H
著者Katayanagi, K, Morikawa, K.
登録日1993-06-23
公開日1993-10-31
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal structures of ribonuclease HI active site mutants from Escherichia coli.
J.Biol.Chem., 268, 1993
4G78
DownloadVisualize
BU of 4g78 by Molmil
Subatomic Resolution Crystal Structure of Histidine-containing Phosphotransfer Protein MtHPt2 from Medicago truncatula
分子名称: Histidine phosphotransfer protein
著者Ruszkowski, M, Sikorski, M, Jaskolski, M.
登録日2012-07-20
公開日2013-07-24
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (0.92 Å)
主引用文献Subatomic Resolution Crystal Structure of Histidine-containing Phosphotransfer Protein MtHPt2 from Medicago truncatula
To be Published
6IOY
DownloadVisualize
BU of 6ioy by Molmil
Crystal structure of Porphyromonas gingivalis acetate kinase
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Acetate kinase, SULFATE ION
著者Kezuka, Y, Yoshida, Y, Nonaka, T.
登録日2018-10-31
公開日2019-04-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Characterization of the phosphotransacetylase-acetate kinase pathway for ATP production inPorphyromonas gingivalis.
J Oral Microbiol, 11, 2019
6IOW
DownloadVisualize
BU of 6iow by Molmil
Crystal structure of Porphyromonas gingivalis phosphotransacetylase
分子名称: Phosphotransacetylase
著者Kezuka, Y, Yoshida, Y, Nonaka, T.
登録日2018-10-31
公開日2019-04-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Characterization of the phosphotransacetylase-acetate kinase pathway for ATP production inPorphyromonas gingivalis.
J Oral Microbiol, 11, 2019
5XM1
DownloadVisualize
BU of 5xm1 by Molmil
The mouse nucleosome structure containing H2A, H2B type3-A, H3mm7, and H4
分子名称: DNA (146-MER), Histone H2A type 1-B, Histone H2B type 3-A, ...
著者Taguchi, H, Horikoshi, N, Kurumizaka, H.
登録日2017-05-12
公開日2018-03-07
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.45 Å)
主引用文献Histone H3.3 sub-variant H3mm7 is required for normal skeletal muscle regeneration.
Nat Commun, 9, 2018
6IOX
DownloadVisualize
BU of 6iox by Molmil
Crystal structure of Porphyromonas gingivalis phosphotransacetylase in complex with acetyl-CoA
分子名称: ACETYL COENZYME *A, Phosphotransacetylase
著者Kezuka, Y, Yoshida, Y, Nonaka, T.
登録日2018-10-31
公開日2019-04-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Characterization of the phosphotransacetylase-acetate kinase pathway for ATP production inPorphyromonas gingivalis.
J Oral Microbiol, 11, 2019
7Y3L
DownloadVisualize
BU of 7y3l by Molmil
Structure of SALL3 ZFC4 bound with 12 bp AT-rich dsDNA
分子名称: DNA (12-mer), Sal-like protein 3, ZINC ION
著者Ru, W, Xu, C.
登録日2022-06-11
公開日2022-10-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural studies of SALL family protein zinc finger cluster domains in complex with DNA reveal preferential binding to an AATA tetranucleotide motif.
J.Biol.Chem., 298, 2022
7Y3I
DownloadVisualize
BU of 7y3i by Molmil
Structure of DNA bound SALL4
分子名称: DNA (12-mer), Sal-like protein 4, ZINC ION
著者Ru, W, Xu, C.
登録日2022-06-10
公開日2022-10-26
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Structural studies of SALL family protein zinc finger cluster domains in complex with DNA reveal preferential binding to an AATA tetranucleotide motif.
J.Biol.Chem., 298, 2022
7Y3K
DownloadVisualize
BU of 7y3k by Molmil
Structure of SALL4 ZFC4 bound with 16 bp AT-rich dsDNA
分子名称: DNA (16-mer), Sal-like protein 4, ZINC ION
著者Ru, W, Xu, C.
登録日2022-06-11
公開日2022-10-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.501 Å)
主引用文献Structural studies of SALL family protein zinc finger cluster domains in complex with DNA reveal preferential binding to an AATA tetranucleotide motif.
J.Biol.Chem., 298, 2022
7Y3M
DownloadVisualize
BU of 7y3m by Molmil
Structure of SALL4 ZFC1 bound with 16 bp AT-rich dsDNA
分子名称: DNA (16-mer), Sal-like protein 4, ZINC ION
著者Ru, W, Xu, C.
登録日2022-06-11
公開日2022-10-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.723 Å)
主引用文献Structural studies of SALL family protein zinc finger cluster domains in complex with DNA reveal preferential binding to an AATA tetranucleotide motif.
J.Biol.Chem., 298, 2022
5WQJ
DownloadVisualize
BU of 5wqj by Molmil
Crystal structure of 3-Mercaptopyruvate Sulfurtransferase(3MST) in complex with compound1
分子名称: 2-[2-[(4-oxidanylidene-3~{H}-quinazolin-2-yl)sulfanyl]ethanoylamino]thiophene-3-carboxamide, SODIUM ION, Sulfurtransferase
著者Suwanai, Y, Toma-Fukai, S, Shimizu, T.
登録日2016-11-27
公開日2017-09-06
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Discovery and Mechanistic Characterization of Selective Inhibitors of H2S-producing Enzyme: 3-Mercaptopyruvate Sulfurtransferase (3MST) Targeting Active-site Cysteine Persulfide
Sci Rep, 7, 2017
5WQK
DownloadVisualize
BU of 5wqk by Molmil
Crystal structure of 3-Mercaptopyruvate Sulfurtransferase(3MST) in complex with compound1
分子名称: 4-methyl-2-(2-naphthalen-1-yl-2-oxidanylidene-ethyl)sulfanyl-1~{H}-pyrimidin-6-one, SODIUM ION, Sulfurtransferase
著者Suwanai, Y, Toma-Fukai, S, Shimizu, T.
登録日2016-11-27
公開日2017-09-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Discovery and Mechanistic Characterization of Selective Inhibitors of H2S-producing Enzyme: 3-Mercaptopyruvate Sulfurtransferase (3MST) Targeting Active-site Cysteine Persulfide
Sci Rep, 7, 2017
3GWD
DownloadVisualize
BU of 3gwd by Molmil
Closed crystal structure of cyclohexanone monooxygenase
分子名称: Cyclohexanone monooxygenase, FLAVIN-ADENINE DINUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Mirza, I.A, Yachnin, B.J, Berghuis, A.M.
登録日2009-03-31
公開日2009-05-05
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structures of cyclohexanone monooxygenase reveal complex domain movements and a sliding cofactor
J.Am.Chem.Soc., 131, 2009
5XM0
DownloadVisualize
BU of 5xm0 by Molmil
The mouse nucleosome structure containing H2A, H2B type3-A, H3.3, and H4
分子名称: DNA (146-MER), Histone H2A type 1-B, Histone H2B type 3-A, ...
著者Taguchi, H, Horikoshi, N, Kurumizaka, H.
登録日2017-05-12
公開日2018-03-07
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.874 Å)
主引用文献Histone H3.3 sub-variant H3mm7 is required for normal skeletal muscle regeneration.
Nat Commun, 9, 2018
3GWF
DownloadVisualize
BU of 3gwf by Molmil
Open crystal structure of cyclohexanone monooxygenase
分子名称: Cyclohexanone monooxygenase, FLAVIN-ADENINE DINUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Mirza, I.A, Yachnin, B.J, Berghuis, A.M.
登録日2009-04-01
公開日2009-05-05
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structures of cyclohexanone monooxygenase reveal complex domain movements and a sliding cofactor
J.Am.Chem.Soc., 131, 2009
1VFH
DownloadVisualize
BU of 1vfh by Molmil
Crystal structure of alanine racemase from D-cycloserine producing Streptomyces lavendulae
分子名称: PYRIDOXAL-5'-PHOSPHATE, alanine racemase
著者Noda, M, Matoba, Y, Kumagai, T, Sugiyama, M.
登録日2004-04-13
公開日2004-09-14
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural evidence that alanine racemase from a D-cycloserine-producing microorganism exhibits resistance to its own product.
J.Biol.Chem., 279, 2004
1VFS
DownloadVisualize
BU of 1vfs by Molmil
Crystal structure of D-cycloserine-bound form of alanine racemase from D-cycloserine-producing Streptomyces lavendulae
分子名称: CHLORIDE ION, D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE, alanine racemase
著者Noda, M, Matoba, Y, Kumagai, T, Sugiyama, M.
登録日2004-04-19
公開日2004-09-14
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural evidence that alanine racemase from a D-cycloserine-producing microorganism exhibits resistance to its own product.
J.Biol.Chem., 279, 2004
4XB2
DownloadVisualize
BU of 4xb2 by Molmil
Hyperthermophilic archaeal homoserine dehydrogenase mutant in complex with NADPH
分子名称: 319aa long hypothetical homoserine dehydrogenase, L-HOMOSERINE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
著者Sakuraba, H, Inoue, S, Yoneda, K, Ohshima, T.
登録日2014-12-16
公開日2015-07-15
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.43 Å)
主引用文献Crystal Structures of a Hyperthermophilic Archaeal Homoserine Dehydrogenase Suggest a Novel Cofactor Binding Mode for Oxidoreductases.
Sci Rep, 5, 2015
4XB1
DownloadVisualize
BU of 4xb1 by Molmil
Hyperthermophilic archaeal homoserine dehydrogenase in complex with NADPH
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 319aa long hypothetical homoserine dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
著者Sakuraba, H, Inoue, S, Yoneda, K, Ohshima, T.
登録日2014-12-16
公開日2015-07-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structures of a Hyperthermophilic Archaeal Homoserine Dehydrogenase Suggest a Novel Cofactor Binding Mode for Oxidoreductases.
Sci Rep, 5, 2015
3VU8
DownloadVisualize
BU of 3vu8 by Molmil
Metionyl-tRNA synthetase from Thermus thermophilus complexed with methionyl-adenylate analogue
分子名称: Methionine--tRNA ligase, N-[METHIONYL]-N'-[ADENOSYL]-DIAMINOSULFONE, ZINC ION
著者Konno, M, Kato-Murayama, M, Toma-Fukai, S, Uchikawa, E, Nureki, O, Yokoyama, S.
登録日2012-06-22
公開日2013-06-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The modeling of structures of specific conformation of homosysteine-AMP leading to thiolactone-formation on class Ia aminoacyl-tRNA synthetases
To be Published
3WPN
DownloadVisualize
BU of 3wpn by Molmil
Kinesin spindle protein Eg5 in complex with ATP-competitive inhibitor PVZB1194
分子名称: 3'-fluoro-4'-(trifluoromethyl)biphenyl-4-sulfonamide, Kinesin-like protein KIF11
著者Yokoyama, H, Katoh, S, Fujii, S.
登録日2014-01-14
公開日2015-01-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural basis of new allosteric inhibition in Kinesin spindle protein eg5
Acs Chem.Biol., 10, 2015
8GQ9
DownloadVisualize
BU of 8gq9 by Molmil
Crystal structure of lasso peptide epimerase MslH
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, GLYCEROL, ...
著者Nakashima, Y, Morita, H.
登録日2022-08-29
公開日2023-06-21
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of lasso peptide epimerase MslH reveals metal-dependent acid/base catalytic mechanism.
Nat Commun, 14, 2023

222624

件を2024-07-17に公開中

PDB statisticsPDBj update infoContact PDBjnumon