Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7RCX
DownloadVisualize
BU of 7rcx by Molmil
Crystal structure of C. difficile penicillin-binding protein 2 in apo form
分子名称: GLYCEROL, Penicillin-binding protein, SULFATE ION, ...
著者Sacco, M, Chen, Y.
登録日2021-07-08
公開日2022-03-23
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献A unique class of Zn 2+ -binding serine-based PBPs underlies cephalosporin resistance and sporogenesis in Clostridioides difficile.
Nat Commun, 13, 2022
7RCZ
DownloadVisualize
BU of 7rcz by Molmil
Crystal structure of C. difficile SpoVD in complex with ampicillin
分子名称: (2R,4S)-2-[(R)-{[(2R)-2-amino-2-phenylacetyl]amino}(carboxy)methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, ...
著者Sacco, M, Chen, Y.
登録日2021-07-08
公開日2022-03-23
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献A unique class of Zn 2+ -binding serine-based PBPs underlies cephalosporin resistance and sporogenesis in Clostridioides difficile.
Nat Commun, 13, 2022
7RCY
DownloadVisualize
BU of 7rcy by Molmil
Crystal structure of C. difficile penicillin-binding protein 2 in complex with ceftobiprole
分子名称: (2R)-2-[(1R)-1-{[(2Z)-2-(5-amino-1,2,4-thiadiazol-3-yl)-2-(hydroxyimino)acetyl]amino}-2-oxoethyl]-5-({2-oxo-1-[(3R)-pyr rolidin-3-yl]-2,5-dihydro-1H-pyrrol-3-yl}methyl)-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid, Penicillin-binding protein, ZINC ION
著者Sacco, M, Chen, Y.
登録日2021-07-08
公開日2022-03-23
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献A unique class of Zn 2+ -binding serine-based PBPs underlies cephalosporin resistance and sporogenesis in Clostridioides difficile.
Nat Commun, 13, 2022
4X94
DownloadVisualize
BU of 4x94 by Molmil
Crystal structure of Lysosomal Phospholipase A2 crystallized in the presence of methyl arachidonyl fluorophosphonate (hexagonal form)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group XV phospholipase A2, ...
著者Glukhova, A, Tesmer, J.J.G.
登録日2014-12-11
公開日2015-03-11
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure and function of lysosomal phospholipase A2 and lecithin:cholesterol acyltransferase.
Nat Commun, 6, 2015
3GIQ
DownloadVisualize
BU of 3giq by Molmil
Crystal structure of N-acyl-D-Glutamate Deacylase from Bordetella Bronchiseptica complexed with zinc and phosphonate inhibitor, a mimic of the reaction tetrahedral intermediate.
分子名称: N-[(R)-hydroxy(methyl)phosphoryl]-D-glutamic acid, N-acyl-D-glutamate deacylase, ZINC ION
著者Fedorov, A.A, Fedorov, E.V, Cummings, J, Raushel, F.M, Almo, S.C.
登録日2009-03-05
公開日2009-09-01
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Annotating enzymes of uncertain function: the deacylation of D-amino acids by members of the amidohydrolase superfamily.
Biochemistry, 48, 2009
4WTX
DownloadVisualize
BU of 4wtx by Molmil
Crystal structure of the fourth FnIII domain of integrin beta4
分子名称: Integrin beta-4
著者Alonso-Garcia, N, Urien, H, Buey, R.M, de Pereda, J.M.
登録日2014-10-30
公開日2015-02-11
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Combination of X-ray crystallography, SAXS and DEER to obtain the structure of the FnIII-3,4 domains of integrin alpha6beta4
Acta Crystallogr.,Sect.D, 71, 2015
4WMO
DownloadVisualize
BU of 4wmo by Molmil
Selenomethionine derivative of Xenopus laevis embryonic epidermal lectin carbohydrate-binding domain
分子名称: CALCIUM ION, PENTAETHYLENE GLYCOL, XEEL protein
著者Wangkanont, K, Kiessling, L.L, Forest, K.T.
登録日2014-10-09
公開日2016-01-20
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structures of Xenopus Embryonic Epidermal Lectin Reveal a Conserved Mechanism of Microbial Glycan Recognition.
J.Biol.Chem., 291, 2016
4WOV
DownloadVisualize
BU of 4wov by Molmil
CRYSTAL STRUCTURE OF TYROSINE KINASE 2 JH2 (PSEUDO KINASE DOMAIN) COMPLEXED WITH BMS-066 AKA 2-METHOXY-N-({6-[3-METHYL-7-(METHYLAMINO)-3,5,8,10-TETRAAZATRICYCLO[7.3.0.0, 6]DODECA-1(9),2(6),4,7,11-PENTAEN-11-YL]PYRIDIN-2-YL}METHY L)ACETAMIDE
分子名称: 2-methoxy-N-({6-[1-methyl-4-(methylamino)-1,6-dihydroimidazo[4,5-d]pyrrolo[2,3-b]pyridin-7-yl]pyridin-2-yl}methyl)acetamide, Non-receptor tyrosine-protein kinase TYK2, SULFATE ION
著者Muckelbauer, J.K.
登録日2014-10-16
公開日2015-03-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Tyrosine Kinase 2-mediated Signal Transduction in T Lymphocytes Is Blocked by Pharmacological Stabilization of Its Pseudokinase Domain.
J.Biol.Chem., 290, 2015
7R6N
DownloadVisualize
BU of 7r6n by Molmil
Exon-free state of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic trimeric construct
分子名称: Group I intron, MAGNESIUM ION
著者Thelot, F, Liu, D, Liao, M, Yin, P.
登録日2021-06-22
公開日2022-05-04
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Sub-3- angstrom cryo-EM structure of RNA enabled by engineered homomeric self-assembly.
Nat.Methods, 19, 2022
7R6M
DownloadVisualize
BU of 7r6m by Molmil
Post-2S intermediate of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic dimeric construct
分子名称: Group I intron, Ligated exon mimic of the Group I intron, MAGNESIUM ION
著者Thelot, F, Liu, D, Liao, M, Yin, P.
登録日2021-06-22
公開日2022-05-04
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.68 Å)
主引用文献Sub-3- angstrom cryo-EM structure of RNA enabled by engineered homomeric self-assembly.
Nat.Methods, 19, 2022
7R6L
DownloadVisualize
BU of 7r6l by Molmil
5 prime exon-free pre-2S intermediate of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic dimeric construct
分子名称: Group I intron, 3 prime fragment plus 3 prime exon, 5 prime fragment, ...
著者Thelot, F, Liu, D, Liao, M, Yin, P.
登録日2021-06-22
公開日2022-05-04
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (2.85 Å)
主引用文献Sub-3- angstrom cryo-EM structure of RNA enabled by engineered homomeric self-assembly.
Nat.Methods, 19, 2022
4YYS
DownloadVisualize
BU of 4yys by Molmil
Ficin B crystal form II
分子名称: Ficin isoform B, PHOSPHATE ION
著者Azarkan, M, Baeyens-Volant, D, Loris, R.
登録日2015-03-24
公開日2016-04-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Crystal structure of four variants of the protease Ficin from the common fig
To Be Published
4Z1Q
DownloadVisualize
BU of 4z1q by Molmil
Crystal structure of the first bromodomain of human BRD4 bound to benzotriazolo-diazepine scaffold
分子名称: 5-[(4R)-6-(4-chlorophenyl)-1,4-dimethyl-5,6-dihydro-4H-[1,2,4]triazolo[4,3-a][1,5]benzodiazepin-8-yl]pyridin-2-amine, Bromodomain-containing protein 4
著者Setser, J.W, Poy, F, Tang, Y, Bellon, S.F.
登録日2015-03-27
公開日2015-04-08
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.399 Å)
主引用文献Discovery of Benzotriazolo[4,3-d][1,4]diazepines as Orally Active Inhibitors of BET Bromodomains.
Acs Med.Chem.Lett., 7, 2016
7PG2
DownloadVisualize
BU of 7pg2 by Molmil
Low resolution Cryo-EM structure of full-length insulin receptor bound to 3 insulin, conf 1
分子名称: Insulin, Isoform Short of Insulin receptor
著者Nielsen, J.A, Slaaby, R, Boesen, T, Hummelshoj, T, Brandt, J, Schluckebier, G, Nissen, P.
登録日2021-08-12
公開日2022-02-02
最終更新日2022-02-16
実験手法ELECTRON MICROSCOPY (6.7 Å)
主引用文献Structural Investigations of Full-Length Insulin Receptor Dynamics and Signalling.
J.Mol.Biol., 434, 2022
7PG0
DownloadVisualize
BU of 7pg0 by Molmil
Low resolution Cryo-EM structure of full-length insulin receptor bound to 3 insulin with visible ddm micelle, conf 1
分子名称: Insulin, Isoform Short of Insulin receptor
著者Nielsen, J.A, Slaaby, R, Boesen, T, Hummelshoj, T, Brandt, J, Schluckebier, G, Nissen, P.
登録日2021-08-12
公開日2022-02-02
最終更新日2022-02-16
実験手法ELECTRON MICROSCOPY (7.6 Å)
主引用文献Structural Investigations of Full-Length Insulin Receptor Dynamics and Signalling.
J.Mol.Biol., 434, 2022
4YYQ
DownloadVisualize
BU of 4yyq by Molmil
Ficin A
分子名称: Ficin isoform A
著者Azarkan, M, Baeyens-Volant, D, Loris, R.
登録日2015-03-24
公開日2016-04-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.594 Å)
主引用文献Crystal structure of four variants of the protease Ficin from the common fig
To Be Published
7PG4
DownloadVisualize
BU of 7pg4 by Molmil
Low resolution Cryo-EM structure of the full-length insulin receptor bound to 2 insulin, conf 3
分子名称: Insulin, Isoform Short of Insulin receptor
著者Nielsen, J.A, Slaaby, R, Boesen, T, Hummelshoj, T, Brandt, J, Schluckebier, G, Nissen, P.
登録日2021-08-12
公開日2022-02-02
最終更新日2022-02-16
実験手法ELECTRON MICROSCOPY (9.1 Å)
主引用文献Structural Investigations of Full-Length Insulin Receptor Dynamics and Signalling.
J.Mol.Biol., 434, 2022
4YYV
DownloadVisualize
BU of 4yyv by Molmil
Ficin isoform C crystal form II
分子名称: 3,6,9,12,15,18-HEXAOXAICOSANE, Ficin isoform C, SULFATE ION
著者Azarkan, M, Baeyens-Volant, D, Loris, R.
登録日2015-03-24
公開日2016-04-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.902 Å)
主引用文献Crystal structure of four variants of the protease Ficin from the common fig
To Be Published
7R4Q
DownloadVisualize
BU of 7r4q by Molmil
The SARS-CoV-2 spike in complex with the 1.29 neutralizing nanobody
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Camel-derived nanobody 1.29, ...
著者Casasnovas, J.M, Melero, R, Arranz, R, Fernandez, L.A.
登録日2022-02-09
公開日2022-06-08
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Nanobodies Protecting From Lethal SARS-CoV-2 Infection Target Receptor Binding Epitopes Preserved in Virus Variants Other Than Omicron.
Front Immunol, 13, 2022
7R4I
DownloadVisualize
BU of 7r4i by Molmil
The SARS-CoV-2 spike in complex with the 2.15 neutralizing nanobody
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Camel-derived nanobody 2.15, ...
著者Casasnovas, J.M, Melero, R, Arranz, R, Fernandez, L.A.
登録日2022-02-08
公開日2022-06-08
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Nanobodies Protecting From Lethal SARS-CoV-2 Infection Target Receptor Binding Epitopes Preserved in Virus Variants Other Than Omicron.
Front Immunol, 13, 2022
7PG3
DownloadVisualize
BU of 7pg3 by Molmil
Low resolution Cryo-EM structure of the full-length insulin receptor bound to 3 insulin, conf 2
分子名称: Insulin, Isoform Short of Insulin receptor
著者Nielsen, J.A, Slaaby, R, Boesen, T, Hummelshoj, T, Brandt, J, Schluckebier, G, Nissen, P.
登録日2021-08-12
公開日2022-02-02
最終更新日2022-02-16
実験手法ELECTRON MICROSCOPY (7.3 Å)
主引用文献Structural Investigations of Full-Length Insulin Receptor Dynamics and Signalling.
J.Mol.Biol., 434, 2022
7R4R
DownloadVisualize
BU of 7r4r by Molmil
The SARS-CoV-2 spike in complex with the 1.10 neutralizing nanobody
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Camel-derived nanobody 1.10, ...
著者Casasnovas, J.M, Melero, R, Arranz, R, Fernandez, L.A.
登録日2022-02-09
公開日2022-06-08
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Nanobodies Protecting From Lethal SARS-CoV-2 Infection Target Receptor Binding Epitopes Preserved in Virus Variants Other Than Omicron.
Front Immunol, 13, 2022
4Z1S
DownloadVisualize
BU of 4z1s by Molmil
Crystal structure of the first bromodomain of human BRD4 with benzotriazolo-diazepine scaffold
分子名称: 5-[(4S)-6-(4-chlorophenyl)-1,4-dimethyl-5,6-dihydro-4H-[1,2,4]triazolo[4,3-a][1,5]benzodiazepin-8-yl]pyridin-2-amine, Bromodomain-containing protein 4
著者Setser, J.W, Poy, F, Tang, Y, Bellon, S.F.
登録日2015-03-27
公開日2015-04-08
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.06 Å)
主引用文献Discovery of Benzotriazolo[4,3-d][1,4]diazepines as Orally Active Inhibitors of BET Bromodomains.
Acs Med.Chem.Lett., 7, 2016
3G4A
DownloadVisualize
BU of 3g4a by Molmil
Crystal structure of flavine dependant thymidylate synthase S88A mutant from Thermotoga maritima at 1.95 angstrom resolution
分子名称: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, Thymidylate synthase thyX
著者Mathews, I.I, Lesley, S.A, Kohen, A.
登録日2009-02-03
公開日2009-04-07
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献An unusual mechanism of thymidylate biosynthesis in organisms containing the thyX gene.
Nature, 458, 2009
4YYW
DownloadVisualize
BU of 4yyw by Molmil
Ficin D2
分子名称: Ficin isoform D, SULFATE ION
著者Azarkan, M, Baeyens-Volant, D, Loris, R.
登録日2015-03-24
公開日2016-04-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.446 Å)
主引用文献Crystal structure of four variants of the protease Ficin from the common fig
To Be Published

225399

件を2024-09-25に公開中

PDB statisticsPDBj update infoContact PDBjnumon