Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2E4R
DownloadVisualize
BU of 2e4r by Molmil
Mutant I253M structure of PH0725 from Pyrococcus horikoshii OT3
分子名称: S-ADENOSYL-L-HOMOCYSTEINE, SODIUM ION, diphthine synthase
著者Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-12-15
公開日2007-06-19
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Mutant I253M structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2EJK
DownloadVisualize
BU of 2ejk by Molmil
Mutant L38M structure of PH0725 from Pyrococcus horikoshii OT3
分子名称: S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION, diphthine synthase
著者Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-16
公開日2007-09-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Mutant L38M structure of PH0725 from Pyrococcus horikoshii OT3
to be published
3E20
DownloadVisualize
BU of 3e20 by Molmil
Crystal structure of S.pombe eRF1/eRF3 complex
分子名称: Eukaryotic peptide chain release factor GTP-binding subunit, Eukaryotic peptide chain release factor subunit 1
著者Cheng, Z, Lim, M, Kong, C, Song, H.
登録日2008-08-05
公開日2009-05-19
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Structural insights into eRF3 and stop codon recognition by eRF1
Genes Dev., 23, 2009
2EMU
DownloadVisualize
BU of 2emu by Molmil
Mutant L21H structure of PH0725 from Pyrococcus horikoshii OT3
分子名称: S-ADENOSYL-L-HOMOCYSTEINE, SODIUM ION, diphthine synthase
著者Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-28
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Mutant L21H structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2EN5
DownloadVisualize
BU of 2en5 by Molmil
Mutant R262H structure of PH0725 from Pyrococcus horikoshii OT3
分子名称: GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, SODIUM ION, ...
著者Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-28
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Mutant R262H structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2EH2
DownloadVisualize
BU of 2eh2 by Molmil
Mutant V18M structure of PH0725 from Pyrococcus horikoshii OT3
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION, ...
著者Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-02
公開日2007-09-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Mutant V18M structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2PC8
DownloadVisualize
BU of 2pc8 by Molmil
E292Q mutant of EXO-B-(1,3)-Glucanase from Candida Albicans in complex with two separately bound glucopyranoside units at 1.8 A
分子名称: Hypothetical protein XOG1, beta-D-glucopyranose
著者Cutfield, S.M, Cutfield, J.F, Patrick, W.M.
登録日2007-03-29
公開日2008-04-01
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Carbohydrate binding sites in Candida albicans exo-beta-1,3-glucanase and the role of the Phe-Phe 'clamp' at the active site entrance.
Febs J., 277, 2010
2LDS
DownloadVisualize
BU of 2lds by Molmil
Solution Structure of a Short-chain LaIT1 from the Venom of Scorpion Liocheles australasiae
分子名称: Insecticidal toxin LaIT1
著者Horita, S, Miyakawa, T, Nagata, K, Tanokura, M.
登録日2011-06-01
公開日2011-09-14
最終更新日2024-10-30
実験手法SOLUTION NMR
主引用文献Solution structure of a short-chain insecticidal toxin LaIT1 from the venom of scorpion Liocheles australasiae.
Biochem.Biophys.Res.Commun., 411, 2011
2PF0
DownloadVisualize
BU of 2pf0 by Molmil
F258I mutant of EXO-B-(1,3)-GLUCANASE FROM CANDIDA ALBICANS at 1.9 A
分子名称: Hypothetical protein XOG1
著者Cutfield, S.M, Cutfield, J.F, Patrick, W.M.
登録日2007-04-03
公開日2008-04-01
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Carbohydrate binding sites in Candida albicans exo-beta-1,3-glucanase and the role of the Phe-Phe 'clamp' at the active site entrance.
Febs J., 277, 2010
3IIT
DownloadVisualize
BU of 3iit by Molmil
Factor XA in complex with a cis-1,2-diaminocyclohexane derivative
分子名称: 7-chloro-N-[(1S,2R,4S)-4-(dimethylcarbamoyl)-2-{[(5-methyl-5,6-dihydro-4H-pyrrolo[3,4-d][1,3]thiazol-2-yl)carbonyl]amino}cyclohexyl]isoquinoline-3-carboxamide, Activated factor Xa heavy chain, CALCIUM ION, ...
著者Suzuki, M.
登録日2009-08-03
公開日2010-08-04
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Design, synthesis, and SAR of cis-1,2-diaminocyclohexane derivatives as potent factor Xa inhibitors. Part II: exploration of 6-6 fused rings as alternative S1 moieties.
Bioorg.Med.Chem., 17, 2009
5B5O
DownloadVisualize
BU of 5b5o by Molmil
Crystal structure of the catalytic domain of MMP-13 complexed with N-phenyl-4-((4H-1,2,4-triazol-3-ylsulfanyl)methyl)-1,3-thiazol-2-amine
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, Collagenase 3, ...
著者Oki, H, Tanaka, Y.
登録日2016-05-13
公開日2017-01-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Discovery of Novel, Highly Potent, and Selective Matrix Metalloproteinase (MMP)-13 Inhibitors with a 1,2,4-Triazol-3-yl Moiety as a Zinc Binding Group Using a Structure-Based Design Approach
J. Med. Chem., 60, 2017
5B5P
DownloadVisualize
BU of 5b5p by Molmil
Crystal structure of the catalytic domain of MMP-13 complexed with 4-oxo-N-(3-(2-(1H-1,2,4-triazol-3-ylsulfanyl)ethoxy)benzyl)-3,4-dihydroquinazoline-2-carboxamide
分子名称: 4-oxo-N-{3-[2-(1H-1,2,4-triazol-3-ylsulfanyl)ethoxy]benzyl}-3,4-dihydroquinazoline-2-carboxamide, CALCIUM ION, Collagenase 3, ...
著者Oki, H, Tanaka, Y.
登録日2016-05-13
公開日2017-01-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Discovery of Novel, Highly Potent, and Selective Matrix Metalloproteinase (MMP)-13 Inhibitors with a 1,2,4-Triazol-3-yl Moiety as a Zinc Binding Group Using a Structure-Based Design Approach
J. Med. Chem., 60, 2017
4P5I
DownloadVisualize
BU of 4p5i by Molmil
Crystal structure of the chemokine binding protein from orf virus
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chemokine binding protein
著者Counago, R.M, Krause, K.L.
登録日2014-03-17
公開日2015-07-15
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structures of Orf Virus Chemokine Binding Protein in Complex with Host Chemokines Reveal Clues to Broad Binding Specificity.
Structure, 23, 2015
1BAV
DownloadVisualize
BU of 1bav by Molmil
CARBOXYPEPTIDASE A COMPLEXED WITH 2-BENZYL-3-IODO-PROPANOIC ACID (BIP)
分子名称: 2-BENZYL-3-IODOPROPANOIC ACID, CARBOXYPEPTIDASE A, ZINC ION
著者Martin, P, Edwards, B.
登録日1996-11-14
公開日1997-04-01
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystallographic and computational insight on the mechanism of zinc-ion-dependent inactivation of carboxypeptidase a by 2-benzyl-3-iodopropanoate.
J.Am.Chem.Soc., 118, 1996
8GOH
DownloadVisualize
BU of 8goh by Molmil
Homotetramic Antiparallel Coiled-Coil of 23-residues LacI C-terminal tetramerization helix
分子名称: LacI C-terminal tetramerization helix, PENTAETHYLENE GLYCOL
著者Kumasaka, T.
登録日2022-08-25
公開日2023-08-30
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Design of interchain Glu-Arg salt-bridges stabilizing heterotetrameric coiled-coil derived from Lac repressor.
To Be Published
8GOI
DownloadVisualize
BU of 8goi by Molmil
23-residues Heterotetramic Antiparallel Coiled-Coil Derived From LacI
分子名称: GLYCEROL, Lac23ys_aEE, an acidic mutant of LacI C-terminal tetramerization helix, ...
著者Kumasaka, T.
登録日2022-08-25
公開日2023-08-30
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Design of interchain Glu-Arg salt-bridges stabilizing heterotetrameric coiled-coil derived from Lac repressor.
To Be Published
8II1
DownloadVisualize
BU of 8ii1 by Molmil
Crystal structure of V30M-TTR in complex with BID
分子名称: Benziodarone, Transthyretin
著者Yokoyama, T.
登録日2023-02-24
公開日2023-06-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.907 Å)
主引用文献Benziodarone and 6-hydroxybenziodarone are potent and selective inhibitors of transthyretin amyloidogenesis.
Bioorg.Med.Chem., 90, 2023
8II3
DownloadVisualize
BU of 8ii3 by Molmil
Crystal structure of V30M-TTR in complex with 6-hydroxy BID
分子名称: Transthyretin, [3,5-bis(iodanyl)-4-oxidanyl-phenyl]-(2-ethyl-6-oxidanyl-1-benzofuran-3-yl)methanone
著者Yokoyama, T.
登録日2023-02-24
公開日2023-06-28
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.399 Å)
主引用文献Benziodarone and 6-hydroxybenziodarone are potent and selective inhibitors of transthyretin amyloidogenesis.
Bioorg.Med.Chem., 90, 2023
8II2
DownloadVisualize
BU of 8ii2 by Molmil
Crystal structure of V30M-TTR in complex with BBM
分子名称: CALCIUM ION, Transthyretin, [3,5-bis(bromanyl)-4-oxidanyl-phenyl]-(2-ethyl-1-benzofuran-3-yl)methanone
著者Yokoyama, T.
登録日2023-02-24
公開日2023-06-28
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.798 Å)
主引用文献Benziodarone and 6-hydroxybenziodarone are potent and selective inhibitors of transthyretin amyloidogenesis.
Bioorg.Med.Chem., 90, 2023
8II4
DownloadVisualize
BU of 8ii4 by Molmil
Crystal structure of V30M-TTR in complex with 6-hydroxy BBM
分子名称: Transthyretin, [3,5-bis(bromanyl)-4-oxidanyl-phenyl]-(2-ethyl-6-oxidanyl-1-benzofuran-3-yl)methanone
著者Yokoyama, T.
登録日2023-02-24
公開日2023-06-28
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.499 Å)
主引用文献Benziodarone and 6-hydroxybenziodarone are potent and selective inhibitors of transthyretin amyloidogenesis.
Bioorg.Med.Chem., 90, 2023
8HRH
DownloadVisualize
BU of 8hrh by Molmil
SN-131/1B2 anti-MUC1 antibody with a glycopeptide
分子名称: 1-ACETYL-L-PROLINE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ALANINE, ...
著者Wakui, H, Horidome, C, Yao, M, Ose, T, Nishimura, S.-I.
登録日2022-12-15
公開日2023-08-30
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Structural and molecular insight into antibody recognition of dynamic neoepitopes in membrane tethered MUC1 of pancreatic cancer cells and secreted exosomes.
Rsc Chem Biol, 4, 2023
8IG1
DownloadVisualize
BU of 8ig1 by Molmil
Crystal structure of wild-type transthyretin in complex with rafoxanide
分子名称: SODIUM ION, Transthyretin, ~{N}-[3-chloranyl-4-(4-chloranylphenoxy)phenyl]-3,5-bis(iodanyl)-2-oxidanyl-benzamide
著者Yokoyama, T.
登録日2023-02-20
公開日2023-08-16
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.451 Å)
主引用文献Rafoxanide, a salicylanilide anthelmintic, interacts with human plasma protein transthyretin.
Febs J., 290, 2023
7W9Q
DownloadVisualize
BU of 7w9q by Molmil
Crystal structure of V30M-TTR in complex with naringenin derivative-14
分子名称: (2~{R})-2-(3-chloranyl-4-oxidanyl-phenyl)-5,7-bis(oxidanyl)-2,3-dihydrochromen-4-one, CALCIUM ION, Transthyretin
著者Katayama, W, Shimane, A, Nabeshima, Y, Yokoyama, T, Mizuguchi, M.
登録日2021-12-10
公開日2022-12-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.599 Å)
主引用文献Chlorinated Naringenin Analogues as Potential Inhibitors of Transthyretin Amyloidogenesis.
J.Med.Chem., 65, 2022
7W9R
DownloadVisualize
BU of 7w9r by Molmil
Crystal structure of V30M-TTR in complex with naringenin derivative-18
分子名称: (2~{R})-2-[3,5-bis(chloranyl)-4-oxidanyl-phenyl]-5,7-bis(oxidanyl)-2,3-dihydrochromen-4-one, Transthyretin
著者Katayama, W, Shimane, A, Nabeshima, Y, Yokoyama, T, Mizuguchi, M.
登録日2021-12-10
公開日2022-12-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.997 Å)
主引用文献Chlorinated Naringenin Analogues as Potential Inhibitors of Transthyretin Amyloidogenesis.
J.Med.Chem., 65, 2022
4EH3
DownloadVisualize
BU of 4eh3 by Molmil
Human p38 MAP kinase in complex with NP-F2 and RL87
分子名称: Mitogen-activated protein kinase 14, NARINGENIN, N~4~-cyclopropyl-2-phenylquinazoline-4,7-diamine
著者Over, B, Gruetter, C, Waldmann, H, Rauh, D.
登録日2012-04-02
公開日2012-12-05
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Natural-product-derived fragments for fragment-based ligand discovery.
Nat Chem, 5, 2012

226707

件を2024-10-30に公開中

PDB statisticsPDBj update infoContact PDBjnumon