Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3VSY
DownloadVisualize
BU of 3vsy by Molmil
High-resolution crystal structure of wild-type KSI in the apo form at neutral pH
分子名称: SULFATE ION, Steroid Delta-isomerase
著者Caaveiro, J.M.M, Kobe, A, Tsumoto, K.
登録日2012-05-16
公開日2013-02-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Incorporation of rapid thermodynamic data in fragment-based drug discovery.
J.Med.Chem., 56, 2013
6LN6
DownloadVisualize
BU of 6ln6 by Molmil
CryoEM structure of SERCA2b T1032stop in E1-2Ca2+-AMPPCP (class2)
分子名称: CALCIUM ION, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
著者Zhang, Y, Tsutsumi, A, Watanabe, S, Inaba, K.
登録日2019-12-28
公開日2020-08-26
最終更新日2020-09-16
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Cryo-EM structures of SERCA2b reveal the mechanism of regulation by the luminal extension tail.
Sci Adv, 6, 2020
6LLE
DownloadVisualize
BU of 6lle by Molmil
CryoEM structure of SERCA2b WT in E1-2Ca2+-AMPPCP state.
分子名称: CALCIUM ION, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
著者Zhang, Y, Tsutsumi, A, Watanabe, S, Inaba, K.
登録日2019-12-23
公開日2020-08-26
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Cryo-EM structures of SERCA2b reveal the mechanism of regulation by the luminal extension tail.
Sci Adv, 6, 2020
6LLY
DownloadVisualize
BU of 6lly by Molmil
CryoEM structure of SERCA2b WT in E2-BeF3- state
分子名称: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 2
著者Zhang, Y, Tsutsumi, A, Watanabe, S, Inaba, K.
登録日2019-12-24
公開日2020-08-26
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Cryo-EM structures of SERCA2b reveal the mechanism of regulation by the luminal extension tail.
Sci Adv, 6, 2020
5GSZ
DownloadVisualize
BU of 5gsz by Molmil
Crystal Structure of the KIF19A Motor Domain Complexed with Mg-ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, Kinesin-like protein KIF19, MAGNESIUM ION
著者Wang, D, Nitta, R, Hirokawa, N.
登録日2016-08-18
公開日2016-09-28
最終更新日2020-02-26
実験手法X-RAY DIFFRACTION (2.72 Å)
主引用文献Motility and microtubule depolymerization mechanisms of the Kinesin-8 motor, KIF19A
Elife, 5, 2016
8J80
DownloadVisualize
BU of 8j80 by Molmil
Cryo-EM structure of hZnT7-Fab complex in zinc state 1, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-unbound conformation
分子名称: Heavy chain of YN7114-08 Fab, Light chain of YN7114-08 Fab, ZINC ION, ...
著者Han, B.B, Inaba, K, Watanabe, S.
登録日2023-04-28
公開日2023-09-20
実験手法ELECTRON MICROSCOPY (2.68 Å)
主引用文献Cryo-EM structures of human zinc transporter ZnT7 reveal the mechanism of Zn 2+ uptake into the Golgi apparatus.
Nat Commun, 14, 2023
8J7V
DownloadVisualize
BU of 8j7v by Molmil
Cryo-EM structure of hZnT7-Fab complex in zinc-unbound state, determined in heterogeneous conformations- one subunit in an inward-facing and the other in an outward-facing conformation
分子名称: Heavy chain of YN7114-08 Fab, Light chain of YN7114-08 Fab, Zinc transporter 7
著者Han, B.B, Inaba, K, Watanabe, S.
登録日2023-04-28
公開日2023-09-20
実験手法ELECTRON MICROSCOPY (2.79 Å)
主引用文献Cryo-EM structures of human zinc transporter ZnT7 reveal the mechanism of Zn 2+ uptake into the Golgi apparatus.
Nat Commun, 14, 2023
8J7U
DownloadVisualize
BU of 8j7u by Molmil
Cryo-EM structure of hZnT7-Fab complex in zinc-bound state, determined in outward-facing conformation
分子名称: Heavy chain of YN7114-08 Fab, Light chain of YN7114-08 Fab, ZINC ION, ...
著者Han, B.B, Inaba, K, Watanabe, S.
登録日2023-04-28
公開日2023-09-20
実験手法ELECTRON MICROSCOPY (3.12 Å)
主引用文献Cryo-EM structures of human zinc transporter ZnT7 reveal the mechanism of Zn 2+ uptake into the Golgi apparatus.
Nat Commun, 14, 2023
8J7X
DownloadVisualize
BU of 8j7x by Molmil
Cryo-EM structure of hZnT7DeltaHis-loop-Fab complex in zinc-unbound state, determined in outward-facing conformation
分子名称: Heavy chain of YN7114-08 Fab, Light chain of YN7114-08 Fab, Zinc transporter 7
著者Han, B.B, Inaba, K, Watanabe, S.
登録日2023-04-28
公開日2023-09-20
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Cryo-EM structures of human zinc transporter ZnT7 reveal the mechanism of Zn 2+ uptake into the Golgi apparatus.
Nat Commun, 14, 2023
8J7W
DownloadVisualize
BU of 8j7w by Molmil
Cryo-EM structure of hZnT7-Fab complex in zinc state 2, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-bound conformation
分子名称: Heavy chain of YN7114-08 Fab, Light chain of YN7114-08 Fab, ZINC ION, ...
著者Han, B.B, Inaba, K, Watanabe, S.
登録日2023-04-28
公開日2023-09-20
実験手法ELECTRON MICROSCOPY (2.92 Å)
主引用文献Cryo-EM structures of human zinc transporter ZnT7 reveal the mechanism of Zn 2+ uptake into the Golgi apparatus.
Nat Commun, 14, 2023
8J7Y
DownloadVisualize
BU of 8j7y by Molmil
Cryo-EM structure of hZnT7DeltaHis-loop-Fab complex in zinc-bound state, determined in outward-facing conformation
分子名称: Heavy chain of YN7114-08 Fab, Light chain of YN7114-08 Fab, ZINC ION, ...
著者Han, B.B, Inaba, K, Watanabe, S.
登録日2023-04-28
公開日2023-09-20
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Cryo-EM structures of human zinc transporter ZnT7 reveal the mechanism of Zn 2+ uptake into the Golgi apparatus.
Nat Commun, 14, 2023
8J7T
DownloadVisualize
BU of 8j7t by Molmil
Cryo-EM structure of hZnT7-Fab complex in zinc-unbound state, determined in outward-facing conformation
分子名称: Heavy chain of YN7114-08 Fab, Light chain of YN7114-08 Fab, Zinc transporter 7
著者Han, B.B, Inaba, K, Watanabe, S.
登録日2023-04-28
公開日2023-09-20
実験手法ELECTRON MICROSCOPY (2.2 Å)
主引用文献Cryo-EM structures of human zinc transporter ZnT7 reveal the mechanism of Zn 2+ uptake into the Golgi apparatus.
Nat Commun, 14, 2023
7W7W
DownloadVisualize
BU of 7w7w by Molmil
E2 Pi of SERCA2b
分子名称: MAGNESIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 2, TETRAFLUOROALUMINATE ION
著者Zhang, Y, Watanabe, S, Tsutsumi, A, Inaba, K.
登録日2021-12-06
公開日2022-12-14
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Multiple sub-state structures of SERCA2b reveal conformational overlap at transition steps during the catalytic cycle.
Cell Rep, 41, 2022
7W7T
DownloadVisualize
BU of 7w7t by Molmil
The E1-BeF3- 2Ca2+ of SERCA2b
分子名称: BERYLLIUM TRIFLUORIDE ION, CALCIUM ION, MAGNESIUM ION, ...
著者Zhang, Y, Watanabe, S, Tsutsumi, A, Inaba, K.
登録日2021-12-06
公開日2022-12-14
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Multiple sub-state structures of SERCA2b reveal conformational overlap at transition steps during the catalytic cycle.
Cell Rep, 41, 2022
7W7U
DownloadVisualize
BU of 7w7u by Molmil
The 'Ca2+-unbound' BeF3- of SERCA2b
分子名称: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 2
著者Zhang, Y, Watanabe, S, Tsutsumi, A, Inaba, K.
登録日2021-12-06
公開日2022-12-14
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Multiple sub-state structures of SERCA2b reveal conformational overlap at transition steps during the catalytic cycle.
Cell Rep, 41, 2022
7W7V
DownloadVisualize
BU of 7w7v by Molmil
'late' E2P of SERCA2b
分子名称: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 2
著者Zhang, Y, Watanabe, S, Tsutsumi, A, Inaba, K.
登録日2021-12-06
公開日2022-12-14
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Multiple sub-state structures of SERCA2b reveal conformational overlap at transition steps during the catalytic cycle.
Cell Rep, 41, 2022
7DAA
DownloadVisualize
BU of 7daa by Molmil
Crystal structure of basigin complexed with anti-basigin Fab fragment
分子名称: CADMIUM ION, Heavy chain of antibody Fab fragment, Isoform 2 of Basigin, ...
著者Sakuragi, T, Kanai, R, Narita, H, Onishi, E, Miyazaki, T, Baba, T, Nakagawa, A, Toyoshima, C, Nagata, S.
登録日2020-10-16
公開日2021-10-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.51 Å)
主引用文献The tertiary structure of the human Xkr8-Basigin complex that scrambles phospholipids at plasma membranes.
Nat.Struct.Mol.Biol., 28, 2021
7D9Z
DownloadVisualize
BU of 7d9z by Molmil
Crystal structure of anti-basigin Fab fragment
分子名称: 1,2-ETHANEDIOL, CITRATE ANION, Heavy chain of antibody Fab fragment, ...
著者Sakuragi, T, Kanai, R, Narita, H, Onishi, E, Miyazaki, T, Baba, T, Nakagawa, A, Toyoshima, C, Nagata, S.
登録日2020-10-14
公開日2021-10-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.123 Å)
主引用文献The tertiary structure of the human Xkr8-Basigin complex that scrambles phospholipids at plasma membranes.
Nat.Struct.Mol.Biol., 28, 2021
7E7S
DownloadVisualize
BU of 7e7s by Molmil
WT transporter state1
分子名称: CALCIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 2
著者Zhang, Y, Watanabe, S, Tsutsumi, A, Inaba, K.
登録日2021-02-27
公開日2021-09-08
最終更新日2022-02-23
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Cryo-EM analysis provides new mechanistic insight into ATP binding to Ca 2+ -ATPase SERCA2b.
Embo J., 40, 2021
7YAM
DownloadVisualize
BU of 7yam by Molmil
CryoEM structure of SPCA1a in E2P state
分子名称: BERYLLIUM TRIFLUORIDE ION, Calcium-transporting ATPase type 2C member 1, MAGNESIUM ION
著者Chen, Z, Watanabe, S, Inaba, K.
登録日2022-06-28
公開日2023-03-22
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Cryo-EM structures of human SPCA1a reveal the mechanism of Ca 2+ /Mn 2+ transport into the Golgi apparatus.
Sci Adv, 9, 2023
7YAJ
DownloadVisualize
BU of 7yaj by Molmil
CryoEM structure of SPCA1a in E1-Mn-AMPPCP state subclass 1
分子名称: Calcium-transporting ATPase type 2C member 1, MANGANESE (II) ION, Nanobody head piece of megabody, ...
著者Chen, Z, Watanabe, S, Inaba, K.
登録日2022-06-28
公開日2023-03-22
実験手法ELECTRON MICROSCOPY (3.16 Å)
主引用文献Cryo-EM structures of human SPCA1a reveal the mechanism of Ca 2+ /Mn 2+ transport into the Golgi apparatus.
Sci Adv, 9, 2023
7YAI
DownloadVisualize
BU of 7yai by Molmil
CryoEM structure of SPCA1a in E1-Ca-AMPPCP state subclass 3
分子名称: CALCIUM ION, Calcium-transporting ATPase type 2C member 1, Nanobody head piece of megabody, ...
著者Chen, Z, Watanabe, S, Inaba, K.
登録日2022-06-28
公開日2023-03-22
実験手法ELECTRON MICROSCOPY (3.14 Å)
主引用文献Cryo-EM structures of human SPCA1a reveal the mechanism of Ca 2+ /Mn 2+ transport into the Golgi apparatus.
Sci Adv, 9, 2023
7YAH
DownloadVisualize
BU of 7yah by Molmil
CryoEM structure of SPCA1a in E1-Ca-AMPPCP state subclass 2
分子名称: CALCIUM ION, Calcium-transporting ATPase type 2C member 1, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
著者Chen, Z, Watanabe, S, Inaba, K.
登録日2022-06-28
公開日2023-03-22
実験手法ELECTRON MICROSCOPY (3.12 Å)
主引用文献Cryo-EM structures of human SPCA1a reveal the mechanism of Ca 2+ /Mn 2+ transport into the Golgi apparatus.
Sci Adv, 9, 2023
7YAG
DownloadVisualize
BU of 7yag by Molmil
CryoEM structure of SPCA1a in E1-Ca-AMPPCP state subclass 1
分子名称: CALCIUM ION, Calcium-transporting ATPase type 2C member 1, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
著者Chen, Z, Watanabe, S, Inaba, K.
登録日2022-06-28
公開日2023-03-22
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Cryo-EM structures of human SPCA1a reveal the mechanism of Ca 2+ /Mn 2+ transport into the Golgi apparatus.
Sci Adv, 9, 2023
7DY0
DownloadVisualize
BU of 7dy0 by Molmil
1.93 A cryo-EM structure of streptavidin
分子名称: Streptavidin
著者Hiraizumi, M, Yamashita, K, Nishizawa, T, Kikkawa, M, Nureki, O.
登録日2021-01-20
公開日2021-02-10
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (1.93 Å)
主引用文献1.93 A cryo-EM structure of streptavidin
To Be Published

221051

件を2024-06-12に公開中

PDB statisticsPDBj update infoContact PDBjnumon