Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7WON
DownloadVisualize
BU of 7won by Molmil
Cryo-EM structure of SARS-CoV-2 S2P trimer in complex with neutralizing antibody VacW-209 (local refinement)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, VacW-209 heavy chain, ...
著者Zheng, Q, Sun, H, Ju, B, Zhang, Z, Li, S, Xia, N.
登録日2022-01-22
公開日2022-07-13
最終更新日2024-10-30
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Immune escape by SARS-CoV-2 Omicron variant and structural basis of its effective neutralization by a broad neutralizing human antibody VacW-209.
Cell Res., 32, 2022
7WP1
DownloadVisualize
BU of 7wp1 by Molmil
Cryo-EM structure of SARS-CoV-2 Mu S6P trimer in complex with neutralizing antibody VacW-209 (local refinement)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, VacW-209 heavy chain, ...
著者Zheng, Q, Sun, H, Ju, B, Zhang, Z, Li, S, Xia, N.
登録日2022-01-22
公開日2022-07-13
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (3.77 Å)
主引用文献Immune escape by SARS-CoV-2 Omicron variant and structural basis of its effective neutralization by a broad neutralizing human antibody VacW-209.
Cell Res., 32, 2022
7WKC
DownloadVisualize
BU of 7wkc by Molmil
A prototype protein nanocage minimized from carboxysomes with gated oxygen permeability
分子名称: Carboxysome shell vertex protein CcmL
著者Tan, H, Yang, J.
登録日2022-01-08
公開日2022-02-16
最終更新日2024-05-15
実験手法SOLID-STATE NMR
主引用文献A prototype protein nanocage minimized from carboxysomes with gated oxygen permeability.
Proc.Natl.Acad.Sci.USA, 119, 2022
7XID
DownloadVisualize
BU of 7xid by Molmil
S-ECD (Omicron) in complex with PD of ACE2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
著者Li, Y.N, Shen, Y.P, Zhang, Y.Y, Yan, R.H.
登録日2022-04-12
公開日2022-06-15
最終更新日2024-10-30
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural and functional analysis of an inter-Spike bivalent neutralizing antibody against SARS-CoV-2 variants.
Iscience, 25, 2022
7XIC
DownloadVisualize
BU of 7xic by Molmil
S-ECD (Omicron) in complex with STS165
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
著者Li, Y.N, Shen, Y.P, Zhang, Y.Y, Yan, R.H.
登録日2022-04-12
公開日2022-06-15
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural and functional analysis of an inter-Spike bivalent neutralizing antibody against SARS-CoV-2 variants.
Iscience, 25, 2022
7YQO
DownloadVisualize
BU of 7yqo by Molmil
Xcc Nicotinamide Phosphoribosyltransferase
分子名称: GLYCEROL, Pre-B cell enhancing factor related protein
著者Xu, G.L, Ming, Z.H.
登録日2022-08-08
公開日2024-02-14
最終更新日2024-09-04
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Structural insights into Xanthomonas campestris pv. campestris NAD + biosynthesis via the NAM salvage pathway.
Commun Biol, 7, 2024
7YQR
DownloadVisualize
BU of 7yqr by Molmil
Crystal Structure of Xcc NAMPT and its complex with NAM
分子名称: NICOTINAMIDE, Pre-B cell enhancing factor related protein
著者Xu, G.L, Ming, Z.H.
登録日2022-08-08
公開日2024-02-14
最終更新日2024-09-04
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural insights into Xanthomonas campestris pv. campestris NAD + biosynthesis via the NAM salvage pathway.
Commun Biol, 7, 2024
7YQQ
DownloadVisualize
BU of 7yqq by Molmil
Crystal Structure of Xcc NAMPT and its complex with NMN
分子名称: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, PHOSPHATE ION, Pre-B cell enhancing factor related protein
著者Xu, G.L, Ming, Z.H.
登録日2022-08-08
公開日2024-02-14
最終更新日2024-09-04
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献Structural insights into Xanthomonas campestris pv. campestris NAD + biosynthesis via the NAM salvage pathway.
Commun Biol, 7, 2024
7YQP
DownloadVisualize
BU of 7yqp by Molmil
Xcc Nicotinamide Phosphoribosyltransferase
分子名称: Pre-B cell enhancing factor related protein
著者Xu, G.L, Ming, Z.H.
登録日2022-08-08
公開日2024-02-14
最終更新日2024-09-04
実験手法X-RAY DIFFRACTION (2.088 Å)
主引用文献Structural insights into Xanthomonas campestris pv. campestris NAD + biosynthesis via the NAM salvage pathway.
Commun Biol, 7, 2024
7YIY
DownloadVisualize
BU of 7yiy by Molmil
Cryo-EM structure of SPT-ORMDL3 complex
分子名称: N-[(2S,3R,4E)-1,3-dihydroxyoctadec-4-en-2-yl]tetracosanamide, ORM1-like protein 3, PYRIDOXAL-5'-PHOSPHATE, ...
著者Xie, T, Liu, P, Gong, X.
登録日2022-07-18
公開日2023-07-05
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Ceramide sensing by human SPT-ORMDL complex for establishing sphingolipid homeostasis.
Nat Commun, 14, 2023
7YIU
DownloadVisualize
BU of 7yiu by Molmil
Cryo-EM structure of the C6-ceramide-bound SPT-ORMDL3 complex
分子名称: HEXADECANE, N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)HEXANAMIDE, ORM1-like protein 3, ...
著者Xie, T, Liu, P, Gong, X.
登録日2022-07-18
公開日2023-07-05
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Ceramide sensing by human SPT-ORMDL complex for establishing sphingolipid homeostasis.
Nat Commun, 14, 2023
7YJ2
DownloadVisualize
BU of 7yj2 by Molmil
Cryo-EM structure of SPT-ORMDL3 (ORMDL3-N13A) complex
分子名称: ORM1-like protein 3, PYRIDOXAL-5'-PHOSPHATE, Serine palmitoyltransferase 1, ...
著者Xie, T, Liu, P, Gong, X.
登録日2022-07-19
公開日2023-07-05
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Ceramide sensing by human SPT-ORMDL complex for establishing sphingolipid homeostasis.
Nat Commun, 14, 2023
7YJ1
DownloadVisualize
BU of 7yj1 by Molmil
Cryo-EM structure of SPT-ORMDL3 (ORMDL3-deltaN2) complex
分子名称: ORM1-like protein 3, PYRIDOXAL-5'-PHOSPHATE, Serine palmitoyltransferase 1, ...
著者Xie, T, Liu, P, Gong, X.
登録日2022-07-19
公開日2023-07-05
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Ceramide sensing by human SPT-ORMDL complex for establishing sphingolipid homeostasis.
Nat Commun, 14, 2023
6PPO
DownloadVisualize
BU of 6ppo by Molmil
Rhinovirus C15 complexed with domain I of receptor CDHR3
分子名称: CALCIUM ION, Cadherin-related family member 3, Capsid protein VP1, ...
著者Sun, Y, Watters, K, Klose, T, Palmenberg, A.C.
登録日2019-07-08
公開日2020-03-11
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Cryo-EM structure of rhinovirus C15a bound to its cadherin-related protein 3 receptor.
Proc.Natl.Acad.Sci.USA, 117, 2020
6PSF
DownloadVisualize
BU of 6psf by Molmil
Rhinovirus C15 complexed with domains I and II of receptor CDHR3
分子名称: Cadherin-related family member 3, Capsid protein VP1, Capsid protein VP2, ...
著者Sun, Y, Watters, K, Klose, T, Palmenberg, A.C.
登録日2019-07-12
公開日2020-03-11
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Cryo-EM structure of rhinovirus C15a bound to its cadherin-related protein 3 receptor.
Proc.Natl.Acad.Sci.USA, 117, 2020
7KTS
DownloadVisualize
BU of 7kts by Molmil
Negative stain EM structure of the human SAGA coactivator complex (TRRAP, core, splicing module)
分子名称: Ataxin-7, Isoform 3 of Transcription factor SPT20 homolog, STAGA complex 65 subunit gamma, ...
著者Herbst, D.A, Esbin, M.N, Nogales, E.
登録日2020-11-24
公開日2021-11-10
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (19.09 Å)
主引用文献Structure of the human SAGA coactivator complex.
Nat.Struct.Mol.Biol., 28, 2021
7KTR
DownloadVisualize
BU of 7ktr by Molmil
Cryo-EM structure of the human SAGA coactivator complex (TRRAP, core)
分子名称: Ataxin-7, INOSITOL HEXAKISPHOSPHATE, Isoform 3 of Transcription factor SPT20 homolog, ...
著者Herbst, D.A, Esbin, M.N, Nogales, E.
登録日2020-11-24
公開日2021-11-10
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.93 Å)
主引用文献Structure of the human SAGA coactivator complex.
Nat.Struct.Mol.Biol., 28, 2021
8WGW
DownloadVisualize
BU of 8wgw by Molmil
Local refinement of RBD-ACE2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
著者Wei, X, Zhang, Z.
登録日2023-09-22
公開日2024-02-28
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献The receptor binding domain of SARS-CoV-2 Omicron subvariants targets Siglec-9 to decrease its immunogenicity by preventing macrophage phagocytosis.
Nat.Immunol., 25, 2024
8T9R
DownloadVisualize
BU of 8t9r by Molmil
T4 highly immunogenic outer capsid protein C-terminal domain bound to a vertex-proximal gp23* capsomer of the prolate capsid in two preferred orientations.
分子名称: Highly immunogenic outer capsid protein, Mature major capsid protein
著者Fokine, A, Rao, V.B.
登録日2023-06-24
公開日2023-07-19
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structure and Function of Hoc-A Novel Environment Sensing Device Encoded by T4 and Other Bacteriophages.
Viruses, 15, 2023
8WGV
DownloadVisualize
BU of 8wgv by Molmil
BA.2(S375) Spike (S6P)/hACE2 complex
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
著者Wei, X, Zhang, Z.
登録日2023-09-22
公開日2024-02-28
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.92 Å)
主引用文献The receptor binding domain of SARS-CoV-2 Omicron subvariants targets Siglec-9 to decrease its immunogenicity by preventing macrophage phagocytosis.
Nat.Immunol., 25, 2024
8T1X
DownloadVisualize
BU of 8t1x by Molmil
T4 highly immunogenic outer capsid protein C-terminal domain bound to the vertex-proximal gp23* capsomer of the isometric head in two preferred orientations
分子名称: Highly immunogenic outer capsid protein, Mature major capsid protein gp23*
著者Fokine, A, Rao, V.B.
登録日2023-06-04
公開日2023-07-19
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structure and Function of Hoc-A Novel Environment Sensing Device Encoded by T4 and Other Bacteriophages.
Viruses, 15, 2023
7E7I
DownloadVisualize
BU of 7e7i by Molmil
Cryo-EM structure of human ABCA4 in the apo state
分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2-acetamido-2-deoxy-beta-D-glucopyranose, Retinal-specific phospholipid-transporting ATPase ABCA4, ...
著者Xie, T, Zhang, Z.K, Gong, X.
登録日2021-02-26
公開日2021-06-30
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural basis of substrate recognition and translocation by human ABCA4.
Nat Commun, 12, 2021
7E7Q
DownloadVisualize
BU of 7e7q by Molmil
Cryo-EM structure of human ABCA4 in ATP-bound state
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Xie, T, Zhang, Z.K, Gong, X.
登録日2021-02-26
公開日2021-06-30
最終更新日2024-10-30
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural basis of substrate recognition and translocation by human ABCA4.
Nat Commun, 12, 2021
7E7O
DownloadVisualize
BU of 7e7o by Molmil
Cryo-EM structure of human ABCA4 in NRPE-bound state
分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2-acetamido-2-deoxy-beta-D-glucopyranose, Retinal-specific phospholipid-transporting ATPase ABCA4, ...
著者Xie, T, Zhang, Z.K, Gong, X.
登録日2021-02-26
公開日2021-06-30
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural basis of substrate recognition and translocation by human ABCA4.
Nat Commun, 12, 2021
7F6L
DownloadVisualize
BU of 7f6l by Molmil
Crystal structure of human MUS81-EME2 complex
分子名称: Crossover junction endonuclease MUS81, Probable crossover junction endonuclease EME2
著者Hua, Z.K, Zhang, D.P, Yuan, C, Lin, Z.H.
登録日2021-06-25
公開日2022-03-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Crystal structure of the human MUS81-EME2 complex.
Structure, 30, 2022

227111

件を2024-11-06に公開中

PDB statisticsPDBj update infoContact PDBjnumon