Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5DFE
DownloadVisualize
BU of 5dfe by Molmil
70S termination complex containing E. coli RF2
分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
著者Hoffer, E.D, Dunham, C.M.
登録日2015-08-26
公開日2016-10-12
最終更新日2025-03-19
実験手法X-RAY DIFFRACTION (3.09997559 Å)
主引用文献Uniformity of Peptide Release Is Maintained by Methylation of Release Factors.
Cell Rep, 17, 2016
7N8Y
DownloadVisualize
BU of 7n8y by Molmil
Oxidized PheRS G318W from Salmonella enterica serovar Typhimurium
分子名称: Phenylalanine--tRNA ligase alpha subunit, Phenylalanine--tRNA ligase beta subunit
著者Srinivas, P, Dunham, C.M.
登録日2021-06-16
公開日2021-10-06
最終更新日2025-06-04
実験手法ELECTRON MICROSCOPY (3.65 Å)
主引用文献Oxidation alters the architecture of the phenylalanyl-tRNA synthetase editing domain to confer hyperaccuracy.
Nucleic Acids Res., 49, 2021
9CG6
DownloadVisualize
BU of 9cg6 by Molmil
70S initiation complex (tRNA-fMet M1 + GUG start codon)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Mattingly, J.M, Nguyen, H.A, Dunham, C.M.
登録日2024-06-28
公開日2024-09-18
最終更新日2025-03-19
実験手法ELECTRON MICROSCOPY (2.61 Å)
主引用文献Structural analysis of noncanonical translation initiation complexes.
J.Biol.Chem., 300, 2024
5IWH
DownloadVisualize
BU of 5iwh by Molmil
Structure of P. vulgaris HigB toxin delta H92
分子名称: CHLORIDE ION, Endoribonuclease HigB
著者Schureck, M.A, Repack, A.A, Miles, S.J, Marquez, J, Dunham, C.M.
登録日2016-03-22
公開日2016-07-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.101 Å)
主引用文献Mechanism of endonuclease cleavage by the HigB toxin.
Nucleic Acids Res., 44, 2016
5IXL
DownloadVisualize
BU of 5ixl by Molmil
Structure of P. vulgaris HigB toxin Y91A variant
分子名称: CHLORIDE ION, Endoribonuclease HigB
著者Schureck, M.A, Repack, A.A, Miles, S.J, Marquez, J, Dunham, C.M.
登録日2016-03-23
公開日2016-07-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Mechanism of endonuclease cleavage by the HigB toxin.
Nucleic Acids Res., 44, 2016
9CG7
DownloadVisualize
BU of 9cg7 by Molmil
70S initiation complex (tRNA-fMet M1 + AUG start codon)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Mattingly, J.M, Nguyen, H.A, Dunham, C.M.
登録日2024-06-28
公開日2024-09-18
最終更新日2025-03-19
実験手法ELECTRON MICROSCOPY (2.75 Å)
主引用文献Structural analysis of noncanonical translation initiation complexes.
J.Biol.Chem., 300, 2024
9CG5
DownloadVisualize
BU of 9cg5 by Molmil
70S initiation complex (tRNA-fMet M1 + UUG start codon)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Mattingly, J.M, Nguyen, H.A, Dunham, C.M.
登録日2024-06-28
公開日2024-09-18
最終更新日2025-03-19
実験手法ELECTRON MICROSCOPY (2.59 Å)
主引用文献Structural analysis of noncanonical translation initiation complexes.
J.Biol.Chem., 300, 2024
9CHN
DownloadVisualize
BU of 9chn by Molmil
P. vulgaris trimeric HigBA- operator 2 DNA
分子名称: Antitoxin HigA, DNA (5'-D(*GP*TP*AP*TP*TP*AP*CP*AP*CP*AP*CP*CP*AP*TP*GP*TP*AP*AP*TP*AP*C)-3'), DNA (5'-D(*GP*TP*AP*TP*TP*AP*CP*AP*TP*GP*GP*TP*GP*TP*GP*TP*AP*AP*TP*AP*C)-3'), ...
著者Pavelich, I.J, Schureck, M.A, Hoffer, E.D, Dunham, C.M.
登録日2024-07-01
公開日2025-07-02
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献P. vulgaris trimeric HigBA- operator 2 DNA
To Be Published
9CHL
DownloadVisualize
BU of 9chl by Molmil
P. vulgaris tetrameric HigBA- operator 2 DNA
分子名称: Antitoxin HigA, CHLORIDE ION, DNA (5'-D(*GP*TP*AP*TP*TP*AP*CP*AP*CP*AP*CP*CP*AP*TP*GP*TP*AP*AP*TP*AP*C)-3'), ...
著者Pavelich, I.J, Schureck, M.A, Hoffer, E.D, Dunham, C.M.
登録日2024-07-01
公開日2025-07-02
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献P. vulgaris tetrameric HigBA- operator 2 DNA
To Be Published
5J3C
DownloadVisualize
BU of 5j3c by Molmil
Thermus thermophilus 70S termination complex containing E. coli RF1
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Hoffer, E.D, Dunham, C.M.
登録日2016-03-30
公開日2016-10-12
最終更新日2025-03-19
実験手法X-RAY DIFFRACTION (3.04 Å)
主引用文献Uniformity of Peptide Release Is Maintained by Methylation of Release Factors.
Cell Rep, 17, 2016
5J30
DownloadVisualize
BU of 5j30 by Molmil
Thermus thermophilus 70S termination complex containing E. coli RF1
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Hoffer, E.D, Dunham, C.M.
登録日2016-03-30
公開日2016-10-12
最終更新日2025-03-19
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Uniformity of Peptide Release Is Maintained by Methylation of Release Factors.
Cell Rep, 17, 2016
8UTJ
DownloadVisualize
BU of 8utj by Molmil
E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S11, ...
著者Kimbrough, E.M, Dunham, C.M, Nguyen, H.A.
登録日2023-10-31
公開日2025-07-09
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting
Nat Commun, 2025
8URM
DownloadVisualize
BU of 8urm by Molmil
E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site
分子名称: 13S ribosomal RNA, 16S ribosomal RNA, 30S ribosomal protein S11, ...
著者Kimbrough, E.M, Dunham, C.M, Nguyen, H.A.
登録日2023-10-26
公開日2025-07-09
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting
Nat Commun, 2025
8UX8
DownloadVisualize
BU of 8ux8 by Molmil
E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame
分子名称: 16S ribosomal RNA, 23S rRNA, 30S ribosomal protein S11, ...
著者Kimbrough, E.M, Dunham, C.M, Nguyen, H.A.
登録日2023-11-09
公開日2025-07-09
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting
Nat Commun, 2025
8UXB
DownloadVisualize
BU of 8uxb by Molmil
E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Kimbrough, E.M, Dunham, C.M, Nguyen, H.A.
登録日2023-11-09
公開日2025-07-09
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting
Nat Commun, 2025
8UZ3
DownloadVisualize
BU of 8uz3 by Molmil
E. coli 70S ribosome with unmodified e*/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Kimbrough, E.M, Dunham, C.M, Nguyen, H.A.
登録日2023-11-14
公開日2025-07-09
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting
Nat Commun, 2025
8V03
DownloadVisualize
BU of 8v03 by Molmil
E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S11, ...
著者Kimbrough, E.M, Dunham, C.M, Nguyen, H.A.
登録日2023-11-16
公開日2025-07-09
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting
Nat Commun, 2025
8UZG
DownloadVisualize
BU of 8uzg by Molmil
E. coli 70S ribosome with unmodified e*/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Kimbrough, E.M, Dunham, C.M, Nguyen, H.A.
登録日2023-11-15
公開日2025-07-09
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting
Nat Commun, 2025
5UCT
DownloadVisualize
BU of 5uct by Molmil
Mycobacterium tuberculosis toxin MazF-mt6
分子名称: Endoribonuclease MazF3, SULFATE ION
著者Hoffer, E.H, Dunham, C.M.
登録日2016-12-22
公開日2017-03-22
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The structure and function of Mycobacterium tuberculosis MazF-mt6 toxin provide insights into conserved features of MazF endonucleases.
J. Biol. Chem., 292, 2017
4YY3
DownloadVisualize
BU of 4yy3 by Molmil
30S ribosomal subunit- HigB complex
分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
著者Schureck, M.A, Maehigashi, T, Dunham, C.M.
登録日2015-03-23
公開日2016-07-06
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献mRNA bound to the 30S subunit is a HigB toxin substrate.
Rna, 22, 2016
5UQ7
DownloadVisualize
BU of 5uq7 by Molmil
70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ("in" conformation)
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Zhang, Y, Hong, S, Skiniotis, G, Dunham, C.M.
登録日2017-02-07
公開日2018-03-07
最終更新日2025-03-19
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Alternative Mode of E-Site tRNA Binding in the Presence of a Downstream mRNA Stem Loop at the Entrance Channel.
Structure, 26, 2018
4YZV
DownloadVisualize
BU of 4yzv by Molmil
Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Schureck, M.A, Dunkle, J.A, Maehigashi, T, Dunham, C.M.
登録日2015-03-25
公開日2015-10-21
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Defining the mRNA recognition signature of a bacterial toxin protein.
Proc.Natl.Acad.Sci.USA, 112, 2015
5UQ8
DownloadVisualize
BU of 5uq8 by Molmil
70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ("out" conformation)
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Zhang, Y, Hong, S, Skiniotis, G, Dunham, C.M.
登録日2017-02-07
公開日2018-03-07
最終更新日2025-03-19
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Alternative Mode of E-Site tRNA Binding in the Presence of a Downstream mRNA Stem Loop at the Entrance Channel.
Structure, 26, 2018
4ZSN
DownloadVisualize
BU of 4zsn by Molmil
70S-wild-type HigB toxin complex bound to a AAA lysine codon
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Schureck, M.A, Dunham, C.M.
登録日2015-05-13
公開日2016-09-07
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Mechanism of endonuclease cleavage by the HigB toxin.
Nucleic Acids Res., 44, 2016
5VPO
DownloadVisualize
BU of 5vpo by Molmil
The 70S P-site ASL SufA6 complex
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Hong, S, Sunita, S, Dunkle, J.A, Maehigashi, T, Dunham, C.M.
登録日2017-05-05
公開日2018-09-26
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (3.34 Å)
主引用文献Mechanism of tRNA-mediated +1 ribosomal frameshifting.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon