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2ZQ2
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BU of 2zq2 by Molmil
Exploring trypsin S3 pocket
分子名称: CALCIUM ION, Cationic trypsin, GLYCEROL, ...
著者Brandt, T, Baum, B, Heine, A, Klebe, G.
登録日2008-08-03
公開日2009-08-04
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Congeneric but still distinct: how closely related trypsin ligands exhibit different thermodynamic and structural properties
J.Mol.Biol., 405, 2011
2ZDA
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BU of 2zda by Molmil
Exploring Thrombin S1 pocket
分子名称: D-phenylalanyl-N-{4-[amino(iminio)methyl]benzyl}-L-prolinamide, Hirudin variant-1, PHOSPHATE ION, ...
著者Baum, B, Heine, A, Klebe, G.
登録日2007-11-21
公開日2008-10-28
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Think twice: understanding the high potency of bis(phenyl)methane inhibitors of thrombin
J.Mol.Biol., 391, 2009
2ZFF
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BU of 2zff by Molmil
Exploring Thrombin S1-pocket
分子名称: D-phenylalanyl-N-benzyl-L-prolinamide, Hirudin variant-1, SODIUM ION, ...
著者Baum, B, Heine, A, Klebe, G.
登録日2008-01-04
公開日2008-12-16
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献Exploring Thrombin S1-pocket
To be Published
2ZFP
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BU of 2zfp by Molmil
Thrombin Inibition
分子名称: 1-[(2R)-2-aminobutanoyl]-N-(3-chlorobenzyl)-L-prolinamide, Hirudin variant-1, SODIUM ION, ...
著者Baum, B, Heine, A, Klebe, G.
登録日2008-01-08
公開日2008-12-16
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Think twice: understanding the high potency of bis(phenyl)methane inhibitors of thrombin
J.Mol.Biol., 391, 2009
2ZG0
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BU of 2zg0 by Molmil
Exploring thrombin S3 pocket
分子名称: (S)-N-(4-carbamimidoylbenzyl)-1-(3-cyclohexylpropanoyl)pyrrolidine-2-carboxamide, Hirudin, SODIUM ION, ...
著者Brandt, T, Baum, B, Heine, A, Klebe, G.
登録日2008-01-16
公開日2009-01-20
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Exploring thrombin S3 pocket
To be Published
4H3E
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BU of 4h3e by Molmil
Crystal structure of a putative iron superoxide dismutase from Trypanosoma cruzi bound to iron
分子名称: FE (II) ION, Superoxide dismutase
著者Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2012-09-13
公開日2012-09-26
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Iron superoxide dismutases in eukaryotic pathogens: new insights from Apicomplexa and Trypanosoma structures.
Acta Crystallogr F Struct Biol Commun, 71, 2015
3F68
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BU of 3f68 by Molmil
Thrombin Inhibition
分子名称: Hirudin variant-2, N-acetyl-3-cyclohexyl-D-alanyl-N-(3-chlorobenzyl)-L-prolinamide, Prothrombin, ...
著者Baum, B, Heine, A, Klebe, G.
登録日2008-11-05
公開日2009-10-20
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Think twice: understanding the high potency of bis(phenyl)methane inhibitors of thrombin.
J.Mol.Biol., 391, 2009
4DMT
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BU of 4dmt by Molmil
Crystal structure of a VWF binding collagen III derived triple helical peptide
分子名称: Collagen III derived peptide, GLYCEROL
著者Brondijk, T.H.C, Huizinga, E.G.
登録日2012-02-08
公開日2012-03-28
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.39 Å)
主引用文献Implications for collagen I chain registry from the structure of the collagen von Willebrand factor A3 domain complex.
Proc.Natl.Acad.Sci.USA, 109, 2012
4D91
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BU of 4d91 by Molmil
Thermolysin In Complex With DMSO And Acetate
分子名称: ACETATE ION, CALCIUM ION, DIMETHYL SULFOXIDE, ...
著者Biela, A, Heine, A, Klebe, G.
登録日2012-01-11
公開日2013-01-16
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Thermolysin Inhibition
To be Published
3DHK
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BU of 3dhk by Molmil
Bisphenylic Thrombin Inhibitors
分子名称: Hirudin variant-1, SODIUM ION, Thrombin heavy chain, ...
著者Baum, B, Heine, A, Klebe, G.
登録日2008-06-18
公開日2009-05-19
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Think twice: understanding the high potency of bis(phenyl)methane inhibitors of thrombin
J.Mol.Biol., 391, 2009
4D9W
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BU of 4d9w by Molmil
Thermolysin In Complex With UBTLN32
分子名称: CALCIUM ION, DIMETHYL SULFOXIDE, GLYCEROL, ...
著者Biela, A, Heine, A, Klebe, G.
登録日2012-01-12
公開日2013-01-16
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.381 Å)
主引用文献Thermolysin Inhibition
To be Published
3DTS
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BU of 3dts by Molmil
E(L212)A, D(L213)A, R(M233)L triple mutant structure of photosynthetic reaction center from Rhodobacter sphaeroides
分子名称: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
著者Pokkuluri, P.R, Schiffer, M.
登録日2008-07-15
公開日2009-06-30
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structural description of compensatory mutations that restore proton transfer pathways to the L212-L213A mutant bacterial reaction center
To be Published
3FLF
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BU of 3flf by Molmil
Thermolysin inhibition
分子名称: CALCIUM ION, GLYCEROL, N-[(S)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-L-valyl-L-leucine, ...
著者Englert, L, Biela, A, Heine, A, Klebe, G.
登録日2008-12-18
公開日2010-01-12
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Displacement of disordered water molecules from hydrophobic pocket creates enthalpic signature: binding of phosphonamidate to the S1'-pocket of thermolysin.
Biochim.Biophys.Acta, 1800, 2010
6DEY
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BU of 6dey by Molmil
Aspartylglucosaminuria mutant structure and function
分子名称: Glycosylasparaginase, residues 188-331, residues 38-178
著者Pande, S, Laksminarasimhan, D, Guo, H.C.
登録日2018-05-13
公開日2018-08-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Biochemical and structural insights into an allelic variant causing the lysosomal storage disorder - aspartylglucosaminuria.
FEBS Lett., 592, 2018
2OGZ
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BU of 2ogz by Molmil
Crystal structure of DPP-IV complexed with Lilly aryl ketone inhibitor
分子名称: 4-[(3R)-3-{[2-(4-FLUOROPHENYL)-2-OXOETHYL]AMINO}BUTYL]BENZAMIDE, Dipeptidyl peptidase
著者Timm, D.E.
登録日2007-01-09
公開日2007-03-06
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Discovery of non-covalent dipeptidyl peptidase IV inhibitors which induce a conformational change in the active site.
Bioorg.Med.Chem.Lett., 17, 2007
3E53
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BU of 3e53 by Molmil
Crystal structure of N-terminal domain of a Fatty Acyl AMP Ligase FAAL28 from Mycobacterium tuberculosis
分子名称: FATTY-ACID-CoA LIGASE FADD28
著者Goyal, A, Rajakumara, E, Yousuf, M, Sankaranarayanan, R.
登録日2008-08-13
公開日2009-01-27
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Mechanistic and functional insights into fatty acid activation in Mycobacterium tuberculosis.
Nat.Chem.Biol., 5, 2009
5J5E
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BU of 5j5e by Molmil
crystal structure of antigen-ERAP1 domain complex
分子名称: Endoplasmic reticulum aminopeptidase 1
著者Sui, L, Gandhi, A, Guo, H.-C.
登録日2016-04-02
公開日2017-04-12
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of a polypeptide's C-terminus in complex with the regulatory domain of ER aminopeptidase 1.
Mol.Immunol., 80, 2016
4DMU
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BU of 4dmu by Molmil
Crystal structure of the von Willebrand factor A3 domain in complex with a collagen III derived triple-helical peptide
分子名称: Collagen III derived triple-helical peptide, SULFATE ION, von Willebrand factor
著者Brondijk, T.H.C, Huizinga, E.G.
登録日2012-02-08
公開日2012-03-28
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Implications for collagen I chain registry from the structure of the collagen von Willebrand factor A3 domain complex.
Proc.Natl.Acad.Sci.USA, 109, 2012
3FV4
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BU of 3fv4 by Molmil
Thermolysin inhibition
分子名称: CALCIUM ION, DIMETHYL SULFOXIDE, GLYCEROL, ...
著者Englert, L, Biela, A, Heine, A, Klebe, G.
登録日2009-01-15
公開日2010-02-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Displacement of disordered water molecules from hydrophobic pocket creates enthalpic signature: binding of phosphonamidate to the S1'-pocket of thermolysin.
Biochim.Biophys.Acta, 1800, 2010
3FVP
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BU of 3fvp by Molmil
Thermolysin inhibition
分子名称: CALCIUM ION, DIMETHYL SULFOXIDE, GLYCEROL, ...
著者Englert, L, Biela, A, Heine, A, Klebe, G.
登録日2009-01-16
公開日2010-02-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.41 Å)
主引用文献Thermolysin inhibition
To be Published
6E4A
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BU of 6e4a by Molmil
Crystal structure of human BRD4(1) in complex with CN750
分子名称: 5-(4-{[(3-chlorophenyl)methyl]amino}-2-{4-[2-(dimethylamino)ethyl]piperazin-1-yl}quinazolin-6-yl)-1-methylpyridin-2(1H)-one, Bromodomain-containing protein 4, GLYCEROL
著者Fontano, E, White, A, Lakshminarasimhan, D, Suto, R.K.
登録日2018-07-17
公開日2018-09-12
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.26 Å)
主引用文献Discovery and lead identification of quinazoline-based BRD4 inhibitors.
Bioorg. Med. Chem. Lett., 28, 2018
3DT0
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BU of 3dt0 by Molmil
Understanding Thrombin Inhibition
分子名称: Hirudin variant-1, N-(3-chlorobenzyl)-1-(4-methylpentanoyl)-L-prolinamide, SODIUM ION, ...
著者Baum, B, Heine, A, Klebe, G.
登録日2008-07-14
公開日2009-06-23
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Understanding Thrombin Inhibition
To be Published
4RZD
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BU of 4rzd by Molmil
Crystal Structure of a PreQ1 Riboswitch
分子名称: 7-DEAZA-7-AMINOMETHYL-GUANINE, PreQ1-III Riboswitch (Class 3)
著者Wedekind, J.E, Liberman, J.A, Salim, M.
登録日2014-12-20
公開日2015-07-01
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Structural analysis of a class III preQ1 riboswitch reveals an aptamer distant from a ribosome-binding site regulated by fast dynamics.
Proc.Natl.Acad.Sci.USA, 112, 2015
4BJX
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BU of 4bjx by Molmil
N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH GSK1324726A (I-BET726)
分子名称: 4-[(2S,4R)-1-acetyl-4-[(4-chlorophenyl)amino]-2-methyl-1,2,3,4-tetrahydroquinolin-6-yl]benzoic acid, BROMODOMAIN-CONTAINING PROTEIN 4
著者Chung, C.
登録日2013-04-20
公開日2013-10-02
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Bet Inhibition Silences Expression of Mycn and Bcl2 and Induces Cytotoxicity in Neuroblastoma Tumor Models.
Plos One, 8, 2013
4OIT
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BU of 4oit by Molmil
Structure, interactions and evolutionary implications of a domain-swapped lectin dimer from Mycobacterium smegmatis
分子名称: LysM domain protein, alpha-D-mannopyranose, beta-D-mannopyranose
著者Patra, D, Mishra, P, Surolia, A, Vijayan, M.
登録日2014-01-20
公開日2014-07-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.24 Å)
主引用文献Structure, interactions and evolutionary implications of a domain-swapped lectin dimer from Mycobacterium smegmatis.
Glycobiology, 24, 2014

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