Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3AU3
DownloadVisualize
BU of 3au3 by Molmil
Crystal structure of armadillo repeat domain of APC
分子名称: Adenomatous polyposis coli protein
著者Murayama, K, Kato-Murayama, M, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2011-01-28
公開日2011-11-02
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structures of the armadillo repeat domain of adenomatous polyposis coli and its complex with the tyrosine-rich domain of sam68
Structure, 19, 2011
3AT3
DownloadVisualize
BU of 3at3 by Molmil
Crystal structure of CK2alpha with pyradine derivative
分子名称: (1-{6-[6-(cyclopentylamino)-1H-indazol-1-yl]pyrazin-2-yl}-1H-pyrrol-3-yl)acetic acid, Casein kinase II subunit alpha
著者Kinoshita, T.
登録日2010-12-23
公開日2011-11-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献A detailed thermodynamic profile of cyclopentyl and isopropyl derivatives binding to CK2 kinase
Mol.Cell.Biochem., 356, 2011
6KPM
DownloadVisualize
BU of 6kpm by Molmil
Crystal Structure of endo-beta-N-acetylglucosaminidase from Cordyceps militaris in complex with L-fucose
分子名称: Chitinase, DI(HYDROXYETHYL)ETHER, TRIETHYLENE GLYCOL, ...
著者Seki, H, Arakawa, T, Yamada, C, Takegawa, K, Fushinobu, S.
登録日2019-08-15
公開日2019-10-02
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis for the specific cleavage of core-fucosylatedN-glycans by endo-beta-N-acetylglucosaminidase from the fungusCordyceps militaris.
J.Biol.Chem., 294, 2019
6KPL
DownloadVisualize
BU of 6kpl by Molmil
Crystal Structure of endo-beta-N-acetylglucosaminidase from Cordyceps militaris in apo form
分子名称: Chitinase, DI(HYDROXYETHYL)ETHER, TRIETHYLENE GLYCOL
著者Seki, H, Arakawa, T, Yamada, C, Takegawa, K, Fushinobu, S.
登録日2019-08-15
公開日2019-10-02
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural basis for the specific cleavage of core-fucosylatedN-glycans by endo-beta-N-acetylglucosaminidase from the fungusCordyceps militaris.
J.Biol.Chem., 294, 2019
7YOW
DownloadVisualize
BU of 7yow by Molmil
Crystal structure of SARS-CoV-2 omicron variant spike receptor-binding domain (RBD) in complex with NCV2SG48 Fab
分子名称: Fab Heavy chain, Fab Light chain, SULFATE ION, ...
著者Yamamoto, A, Higashiura, A.
登録日2022-08-02
公開日2023-04-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants.
Commun Biol, 6, 2023
5B4F
DownloadVisualize
BU of 5b4f by Molmil
Sulfur Transferase TtuA in complex with iron sulfur cluster
分子名称: IRON/SULFUR CLUSTER, SULFATE ION, Sulfur Transferase TtuA, ...
著者Chen, M, Narai, S, Tanaka, Y, Yao, M.
登録日2016-04-03
公開日2017-05-10
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Biochemical and structural characterization of oxygen-sensitive 2-thiouridine synthesis catalyzed by an iron-sulfur protein TtuA
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4ME7
DownloadVisualize
BU of 4me7 by Molmil
Crystal structure of Bacillus subtilis toxin MazF in complex with cognate antitoxin MazE
分子名称: Antitoxin EndoAI, mRNA interferase EndoA
著者Simanshu, D.K, Patel, D.J.
登録日2013-08-25
公開日2013-10-23
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.918 Å)
主引用文献Structural Basis of mRNA Recognition and Cleavage by Toxin MazF and Its Regulation by Antitoxin MazE in Bacillus subtilis.
Mol.Cell, 52, 2013
4MDX
DownloadVisualize
BU of 4mdx by Molmil
Crystal structure of Bacillus subtilis MazF in complex with RNA
分子名称: IODIDE ION, RNA, mRNA, ...
著者Simanshu, D.K, Patel, D.J.
登録日2013-08-23
公開日2013-10-23
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural Basis of mRNA Recognition and Cleavage by Toxin MazF and Its Regulation by Antitoxin MazE in Bacillus subtilis.
Mol.Cell, 52, 2013
8I5I
DownloadVisualize
BU of 8i5i by Molmil
Crystal structure of SARS-CoV-2 delta variant spike receptor-binding domain (RBD) in complex with NCV2SG53 Fab
分子名称: Fab Heavy chain, Fab Light chain, Spike protein S1
著者Yamamoto, A, Higashiura, A.
登録日2023-01-25
公開日2023-04-19
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (3.06 Å)
主引用文献Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants.
Commun Biol, 6, 2023
8I5H
DownloadVisualize
BU of 8i5h by Molmil
Crystal structure of SARS-CoV-2 delta variant spike receptor-binding domain (RBD) in complex with NCV2SG48 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fab Heavy chain, Fab Light chain, ...
著者Yamamoto, A, Higashiura, A.
登録日2023-01-25
公開日2023-04-19
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants.
Commun Biol, 6, 2023
3ANY
DownloadVisualize
BU of 3any by Molmil
Crystal structure of ethanolamine ammonia-lyase from escherichia coli complexed with CN-CBL and (R)-2-amino-1-propanol
分子名称: (2R)-2-aminopropan-1-ol, COBALAMIN, Ethanolamine ammonia-lyase heavy chain, ...
著者Shibata, N.
登録日2010-09-16
公開日2011-08-03
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献How coenzyme B12-dependent ethanolamine ammonia-lyase deals with both enantiomers of 2-amino-1-propanol as substrates: structure-based rationalization.
Biochemistry, 50, 2011
3A7K
DownloadVisualize
BU of 3a7k by Molmil
Crystal structure of halorhodopsin from Natronomonas pharaonis
分子名称: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, 2,3-DI-PHYTANYL-GLYCEROL, 3-PHOSPHORYL-[1,2-DI-PHYTANYL]GLYCEROL, ...
著者Kouyama, T.
登録日2009-09-27
公開日2009-12-15
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of the Light-Driven Chloride Pump Halorhodopsin from Natronomonas pharaonis.
J.Mol.Biol., 396, 2010
3AMZ
DownloadVisualize
BU of 3amz by Molmil
Bovine Xanthine Oxidoreductase urate bound form
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, BICARBONATE ION, CALCIUM ION, ...
著者Okamoto, K, Eger, B.T, Pai, E.F, Nishino, T.
登録日2010-08-27
公開日2010-12-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structures of Urate Bound Form of Xanthine Oxidoreductase: Substrate Orientation and Structure of the Key Reaction Intermediate
J.Am.Chem.Soc., 132, 2010
3AO0
DownloadVisualize
BU of 3ao0 by Molmil
Crystal structure of ethanolamine ammonia-lyase from Escherichia coli complexed with CN-CBL and (S)-2-amino-1-propanol
分子名称: (2S)-2-aminopropan-1-ol, COBALAMIN, Ethanolamine ammonia-lyase heavy chain, ...
著者Shibata, N.
登録日2010-09-16
公開日2011-08-03
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献How coenzyme B12-dependent ethanolamine ammonia-lyase deals with both enantiomers of 2-amino-1-propanol as substrates: structure-based rationalization.
Biochemistry, 50, 2011
5KZC
DownloadVisualize
BU of 5kzc by Molmil
Crystal structure of an HIV-1 gp120 engineered outer domain with a Man9 glycan at position N276, in complex with broadly neutralizing antibody VRC01
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Engineered outer domain of gp120, VRC01 Fab heavy chain, ...
著者Julien, J.-P, Jardine, J.G, Diwanji, D, Schief, W.R, Wilson, I.A.
登録日2016-07-24
公開日2016-08-10
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (3.25 Å)
主引用文献Minimally Mutated HIV-1 Broadly Neutralizing Antibodies to Guide Reductionist Vaccine Design.
Plos Pathog., 12, 2016
6GF6
DownloadVisualize
BU of 6gf6 by Molmil
Molecular basis of egg coat filament cross-linking: high-resolution structure of the partially deglycosylated ZP1 ZP-N1 domain homodimer
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Zona pellucida sperm-binding protein 1,Zona pellucida sperm-binding protein 1
著者Nishimura, K, Jovine, L.
登録日2018-04-29
公開日2019-06-19
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Molecular basis of egg coat cross-linking sheds light on ZP1-associated female infertility.
Nat Commun, 10, 2019
6GF7
DownloadVisualize
BU of 6gf7 by Molmil
Molecular basis of egg coat filament cross-linking: Zn-SAD structure of the partially deglycosylated ZP1 ZP-N1 domain homodimer
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ZINC ION, Zona pellucida sperm-binding protein 1,Zona pellucida sperm-binding protein 1
著者Nishimura, K, Jovine, L.
登録日2018-04-29
公開日2019-06-19
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Molecular basis of egg coat cross-linking sheds light on ZP1-associated female infertility.
Nat Commun, 10, 2019
6GF8
DownloadVisualize
BU of 6gf8 by Molmil
Molecular basis of egg coat filament cross-linking: structure of the glycosylated ZP1 ZP-N1 domain homodimer
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Nishimura, K, Jovine, L.
登録日2018-04-29
公開日2019-06-19
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Molecular basis of egg coat cross-linking sheds light on ZP1-associated female infertility.
Nat Commun, 10, 2019
6H02
DownloadVisualize
BU of 6h02 by Molmil
Crystal structure of human Mediator subunit MED23
分子名称: LAMA nanobody NB106, Mediator of RNA polymerase II transcription subunit 23
著者Clantin, B, Monte, D, Villeret, V.
登録日2018-07-06
公開日2018-08-29
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of human Mediator subunit MED23.
Nat Commun, 9, 2018
1F3P
DownloadVisualize
BU of 1f3p by Molmil
FERREDOXIN REDUCTASE (BPHA4)-NADH COMPLEX
分子名称: FERREDOXIN REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Senda, T, Yamada, T, Sakurai, N, Kubota, M, Nishizaki, T, Masai, E, Fukuda, M, Mitsuidagger, Y.
登録日2000-06-06
公開日2001-06-06
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase.
J.Mol.Biol., 304, 2000
5TA8
DownloadVisualize
BU of 5ta8 by Molmil
Crystal structure of PLK1 in complex with a novel 5,6-dihydroimidazolo[1,5-f]pteridine inhibitor
分子名称: 4-[(9-cyclopentyl-7,7-difluoro-5-methyl-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl)amino]-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide, Serine/threonine-protein kinase PLK1, ZINC ION
著者Skene, R.J, Hosfield, D.J.
登録日2016-09-09
公開日2017-02-22
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure-based design and SAR development of 5,6-dihydroimidazolo[1,5-f]pteridine derivatives as novel Polo-like kinase-1 inhibitors.
Bioorg. Med. Chem. Lett., 27, 2017
5TA6
DownloadVisualize
BU of 5ta6 by Molmil
Crystal structure of PLK1 in complex with a novel 5,6-dihydroimidazolo[1,5-f]pteridine inhibitor.
分子名称: 4-{[(6R)-7-cyano-5-cyclopentyl-6-ethyl-5,6-dihydroimidazo[1,5-f]pteridin-3-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide, Serine/threonine-protein kinase PLK1, ZINC ION
著者Skene, R.J, Hosfield, D.J.
登録日2016-09-09
公開日2017-02-22
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure-based design and SAR development of 5,6-dihydroimidazolo[1,5-f]pteridine derivatives as novel Polo-like kinase-1 inhibitors.
Bioorg. Med. Chem. Lett., 27, 2017
1ELO
DownloadVisualize
BU of 1elo by Molmil
ELONGATION FACTOR G WITHOUT NUCLEOTIDE
分子名称: ELONGATION FACTOR G
著者Aevarsson, A, Brazhnikov, E, Garber, M, Zheltonosova, J, Chirgadze, Yu, Al-Karadaghi, S, Svensson, L.A, Liljas, A.
登録日1996-03-13
公開日1996-08-01
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Three-dimensional structure of the ribosomal translocase: elongation factor G from Thermus thermophilus.
EMBO J., 13, 1994
7Y6L
DownloadVisualize
BU of 7y6l by Molmil
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab816
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Ab816 heavy chain, Ab816 light chain, ...
著者Uchikubo, T, Shirouzu, M.
登録日2022-06-21
公開日2023-06-21
最終更新日2023-09-13
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Potent neutralizing broad-spectrum antibody against SARS-CoV-2 generated from dual-antigen-specific B cells from convalescents.
Iscience, 26, 2023
7Y6N
DownloadVisualize
BU of 7y6n by Molmil
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab803
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Ab803 heavy chain, Ab803 light chain, ...
著者Uchikubo, T, Shirouzu, M.
登録日2022-06-21
公開日2023-06-21
最終更新日2023-09-13
実験手法ELECTRON MICROSCOPY (4.4 Å)
主引用文献Potent neutralizing broad-spectrum antibody against SARS-CoV-2 generated from dual-antigen-specific B cells from convalescents.
Iscience, 26, 2023

227111

件を2024-11-06に公開中

PDB statisticsPDBj update infoContact PDBjnumon