Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5SWA
DownloadVisualize
BU of 5swa by Molmil
Crystal structure of N-glycan transport solute binding protein (NgtS) from Streptococcus pneumoniae in complex with Man1GlcNAc
分子名称: BROMIDE ION, Extracellular solute-binding protein, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Robb, M, Boraston, A.B.
登録日2016-08-08
公開日2016-12-14
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Molecular Characterization of N-glycan Degradation and Transport in Streptococcus pneumoniae and Its Contribution to Virulence.
PLoS Pathog., 13, 2017
5SUO
DownloadVisualize
BU of 5suo by Molmil
Crystal structure of N-glycan transport solute binding protein (NgtS) from Streptococcus pneumoniae
分子名称: Extracellular solute-binding protein, IODIDE ION
著者Robb, M, Boraston, A.B.
登録日2016-08-03
公開日2016-12-14
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Molecular Characterization of N-glycan Degradation and Transport in Streptococcus pneumoniae and Its Contribution to Virulence.
PLoS Pathog., 13, 2017
6KYJ
DownloadVisualize
BU of 6kyj by Molmil
Hybrid-Rubisco (rice RbcL and sorghum RbcS) in complex with sulfate ions
分子名称: GLYCEROL, Ribulose bisphosphate carboxylase large chain, Ribulose bisphosphate carboxylase small chain, ...
著者Matsumura, H, Yoshizawa, T, Tanaka, S, Yoshikawa, H.
登録日2019-09-19
公開日2020-09-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Hybrid Rubisco with Complete Replacement of Rice Rubisco Small Subunits by Sorghum Counterparts Confers C 4 Plant-like High Catalytic Activity.
Mol Plant, 13, 2020
6KYI
DownloadVisualize
BU of 6kyi by Molmil
Rice Rubisco in complex with sulfate ions
分子名称: GLYCEROL, Ribulose bisphosphate carboxylase large chain, Ribulose bisphosphate carboxylase small chain, ...
著者Matsumura, H, Yoshizawa, T, Tanaka, S, Yoshikawa, H.
登録日2019-09-19
公開日2020-09-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Hybrid Rubisco with Complete Replacement of Rice Rubisco Small Subunits by Sorghum Counterparts Confers C 4 Plant-like High Catalytic Activity.
Mol Plant, 13, 2020
2E7A
DownloadVisualize
BU of 2e7a by Molmil
TNF Receptor Subtype One-selective TNF Mutant with Antagonistic Activity
分子名称: Tumor necrosis factor
著者Mukai, Y, Yamagata, Y, Tsutsumi, Y.
登録日2007-01-09
公開日2007-11-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Creation and X-ray structure analysis of the tumor necrosis factor receptor-1-selective mutant of a tumor necrosis factor-alpha antagonist
J.Biol.Chem., 283, 2008
6LHM
DownloadVisualize
BU of 6lhm by Molmil
Structure of human PYCR2
分子名称: Pyrroline-5-carboxylate reductase 2
著者Baburajendran, N.
登録日2019-12-09
公開日2020-10-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Loss of PYCR2 Causes Neurodegeneration by Increasing Cerebral Glycine Levels via SHMT2.
Neuron, 107, 2020
6F0W
DownloadVisualize
BU of 6f0w by Molmil
prolyl hydroxylase in complex with hypoxia inducible factor oxygen degradation domain peptide fragment from Trichoplax adhaerens
分子名称: HIF prolyl hydroxylase, Hypoxia inducible factor, alpha subunit, ...
著者McDonough, M.A, Boleininger, A, Schofield, C.J.
登録日2017-11-20
公開日2018-10-03
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.301 Å)
主引用文献Born to sense: biophysical analyses of the oxygen sensing prolyl hydroxylase from the simplest animal Trichoplax adhaerens.
Hypoxia (Auckl), 6, 2018
6EY1
DownloadVisualize
BU of 6ey1 by Molmil
prolyl hydroxylase from Trichoplax adhaerens
分子名称: ACETATE ION, GLYCEROL, HIF prolyl hydroxylase, ...
著者McDonough, M.A, Boleininger, A.
登録日2017-11-10
公開日2018-10-03
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.199 Å)
主引用文献Born to sense: biophysical analyses of the oxygen sensing prolyl hydroxylase from the simplest animal Trichoplax adhaerens.
Hypoxia (Auckl), 6, 2018
3VQJ
DownloadVisualize
BU of 3vqj by Molmil
Crystal Structutre of Thiobacillus thioparus THI115 Carbonyl Sulfide Hydrolase
分子名称: Carbonyl sulfide hydrolase, SODIUM ION, ZINC ION
著者Katayama, Y, Noguchi, K, Ogawa, T, Ohtaki, A, Odaka, M, Yohda, M.
登録日2012-03-24
公開日2013-02-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Carbonyl Sulfide Hydrolase from Thiobacillus thioparus Strain THI115 Is One of the beta-Carbonic Anhydrase Family Enzymes
J.Am.Chem.Soc., 135, 2013
3VRK
DownloadVisualize
BU of 3vrk by Molmil
Crystal Structutre of Thiobacillus thioparus THI115 Carbonyl Sulfide Hydrolase / Thiocyanate complex
分子名称: Carbonyl sulfide hydrolase, SODIUM ION, THIOCYANATE ION, ...
著者Katayama, Y, Noguchi, K, Ogawa, T, Ohtaki, A, Odaka, M, Yohda, M.
登録日2012-04-11
公開日2013-02-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.33 Å)
主引用文献Carbonyl Sulfide Hydrolase from Thiobacillus thioparus Strain THI115 Is One of the beta-Carbonic Anhydrase Family Enzymes
J.Am.Chem.Soc., 135, 2013
5U8M
DownloadVisualize
BU of 5u8m by Molmil
A novel family of redox sensors in the streptococci evolved from two-component response regulators
分子名称: Response regulator
著者Han, L, Silvaggi, N.R.
登録日2016-12-14
公開日2017-12-20
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.105 Å)
主引用文献RitR is an archetype for a novel family of redox sensors in the streptococci that has evolved from two-component response regulators and is required for pneumococcal colonization.
PLoS Pathog., 14, 2018
5FQA
DownloadVisualize
BU of 5fqa by Molmil
Crystal Structure of Bacillus cereus Metallo-Beta-Lactamase II
分子名称: 1,2-ETHANEDIOL, BETA-LACTAMASE 2, FE (III) ION, ...
著者Cahill, S.T, Brem, J, McDonough, M.A, Schofield, C.J.
登録日2015-12-08
公開日2016-08-10
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Use of ferrous iron by metallo-beta-lactamases.
J. Inorg. Biochem., 163, 2016
5U8K
DownloadVisualize
BU of 5u8k by Molmil
RitR mutant - C128S
分子名称: Response regulator
著者Silvaggi, N.R, Han, L.
登録日2016-12-14
公開日2017-12-20
最終更新日2018-11-28
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献RitR is an archetype for a novel family of redox sensors in the streptococci that has evolved from two-component response regulators and is required for pneumococcal colonization.
PLoS Pathog., 14, 2018
4J2P
DownloadVisualize
BU of 4j2p by Molmil
Crystal structure of LuxF from Photobacterium leiognathi
分子名称: Non-fluorescent flavoprotein
著者Winkler, A, Macheroux, P, Gruber, K.
登録日2013-02-05
公開日2014-02-05
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural and biochemical properties of LuxF from Photobacterium leiognathi.
Biochim. Biophys. Acta, 1854, 2015
4BP0
DownloadVisualize
BU of 4bp0 by Molmil
Crystal structure of the closed form of Pseudomonas aeruginosa SPM-1
分子名称: CHLORIDE ION, GLYCEROL, METALLO-B-LACTAMASE, ...
著者McDonough, M.A, Brem, J, Schofield, C.J.
登録日2013-05-22
公開日2014-06-18
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.24 Å)
主引用文献Studying the active-site loop movement of the Sao Paolo metallo-beta-lactamase-1
Chem Sci, 6, 2015
5VFA
DownloadVisualize
BU of 5vfa by Molmil
RitR Mutant - C128D
分子名称: Response regulator
著者Han, L, Silvaggi, N.R.
登録日2017-04-07
公開日2018-04-11
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.452 Å)
主引用文献RitR is an archetype for a novel family of redox sensors in the streptococci that has evolved from two-component response regulators and is required for pneumococcal colonization.
PLoS Pathog., 14, 2018
5C5T
DownloadVisualize
BU of 5c5t by Molmil
The crystal structure of viral collagen prolyl hydroxylase vCPH from Paramecium Bursaria Chlorella virus-1 - 2OG complex
分子名称: 2-OXOGLUTARIC ACID, MANGANESE (II) ION, Prolyl 4-hydroxylase, ...
著者Levy, C.W.
登録日2015-06-22
公開日2015-09-30
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.598 Å)
主引用文献Structure and Mechanism of a Viral Collagen Prolyl Hydroxylase.
Biochemistry, 54, 2015
2ZZD
DownloadVisualize
BU of 2zzd by Molmil
Recombinant thiocyanate hydrolase, air-oxidized form of holo-enzyme
分子名称: COBALT (III) ION, L(+)-TARTARIC ACID, Thiocyanate hydrolase subunit alpha, ...
著者Arakawa, T, Kawano, Y, Katayama, Y, Yohda, M, Odaka, M.
登録日2009-02-09
公開日2009-10-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Structural Basis for Catalytic Activation of Thiocyanate Hydrolase Involving Metal-Ligated Cysteine Modification
J.Am.Chem.Soc., 131, 2009
6L8A
DownloadVisualize
BU of 6l8a by Molmil
Tetrathionate hydrolase from Acidithiobacillus ferrooxidans
分子名称: BETA-ALANINE, GLYCINE, SULFATE ION, ...
著者Tamada, T, Hirano, Y.
登録日2019-11-05
公開日2020-11-11
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.95004809 Å)
主引用文献Reaction mechanism of tetrathionate hydrolysis based on the crystal structure of tetrathionate hydrolase from Acidithiobacillus ferrooxidans.
Protein Sci., 30, 2020
7CQY
DownloadVisualize
BU of 7cqy by Molmil
Tetrathionate hydrolase from Acidithiobacillus ferrooxidans mutant - D325N
分子名称: SULFATE ION, Tetrathionate hydrolase
著者Tamada, T, Hirano, Y.
登録日2020-08-12
公開日2021-01-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.80035782 Å)
主引用文献Reaction mechanism of tetrathionate hydrolysis based on the crystal structure of tetrathionate hydrolase from Acidithiobacillus ferrooxidans.
Protein Sci., 30, 2020
3T1F
DownloadVisualize
BU of 3t1f by Molmil
Crystal structure of the mouse CD1d-Glc-DAG-s2 complex
分子名称: (2S)-1-(alpha-D-glucopyranosyloxy)-3-(hexadecanoyloxy)propan-2-yl (11Z)-octadec-11-enoate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Girardi, E, Zajonc, D.M.
登録日2011-07-21
公開日2011-09-21
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Invariant natural killer T cells recognize glycolipids from pathogenic Gram-positive bacteria.
Nat.Immunol., 12, 2011
3WVE
DownloadVisualize
BU of 3wve by Molmil
Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, before photo-activation
分子名称: 2,2-dimethylpropanenitrile, CHLORIDE ION, FE (III) ION, ...
著者Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M.
登録日2014-05-17
公開日2015-06-17
最終更新日2015-11-04
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl., 54, 2015
3WVD
DownloadVisualize
BU of 3wvd by Molmil
Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 50 min
分子名称: 2,2-dimethylpropanenitrile, FE (III) ION, MAGNESIUM ION, ...
著者Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M.
登録日2014-05-17
公開日2015-06-17
最終更新日2015-11-04
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl., 54, 2015
2DXC
DownloadVisualize
BU of 2dxc by Molmil
Recombinant thiocyanate hydrolase, fully-matured form
分子名称: COBALT (III) ION, L(+)-TARTARIC ACID, Thiocyanate hydrolase subunit alpha, ...
著者Arakawa, T, Kawano, Y, Katayama, Y, Yohda, M, Odaka, M.
登録日2006-08-25
公開日2007-08-28
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural Basis for Catalytic Activation of Thiocyanate Hydrolase Involving Metal-Ligated Cysteine Modification
J.Am.Chem.Soc., 131, 2009
2HAS
DownloadVisualize
BU of 2has by Molmil
Crystal structure of VDR LBD in complex with 2alpha-(1-propoxy) calcitriol
分子名称: 2ALPHA-PROPOXY-1ALPHA,25-DIHYDROXYVITAMIN D3, Vitamin D3 receptor
著者Hourai, S, Rochel, N, Moras, D.
登録日2006-06-13
公開日2006-08-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Probing a Water Channel near the A-Ring of Receptor-Bound 1alpha,25-Dihydroxyvitamin D3 with Selected 2alpha-Substituted Analogues
J.Med.Chem., 49, 2006

222926

件を2024-07-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon