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1VD4
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BU of 1vd4 by Molmil
Solution structure of the zinc finger domain of TFIIE alpha
分子名称: Transcription initiation factor IIE, alpha subunit, ZINC ION
著者Okuda, M, Tanaka, A, Arai, Y, Satoh, M, Okamura, H, Nagadoi, A, Hanaoka, F, Ohkuma, Y, Nishimura, Y.
登録日2004-03-18
公開日2004-10-05
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献A novel zinc finger structure in the large subunit of human general transcription factor TFIIE.
J.Biol.Chem., 279, 2004
1PRU
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BU of 1pru by Molmil
PURINE REPRESSOR DNA-BINDING DOMAIN DNA BINDING
分子名称: PURINE REPRESSOR
著者Nagadoi, A, Morikawa, S, Nakamura, H, Enari, M, Kobayashi, K, Yamamoto, H, Sampei, G, Mizobuchi, K, Schumacher, M.A, Brennan, R.G, Nishimura, Y.
登録日1995-05-08
公開日1996-03-08
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural comparison of the free and DNA-bound forms of the purine repressor DNA-binding domain.
Structure, 3, 1995
1PRV
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BU of 1prv by Molmil
PURINE REPRESSOR DNA-BINDING DOMAIN DNA BINDING
分子名称: PURINE REPRESSOR
著者Nagadoi, A, Morikawa, S, Nakamura, H, Enari, M, Kobayashi, K, Yamamoto, H, Sampei, G, Mizobuchi, K, Schumacher, M.A, Brennan, R.G, Nishimura, Y.
登録日1995-05-08
公開日1996-03-08
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural comparison of the free and DNA-bound forms of the purine repressor DNA-binding domain.
Structure, 3, 1995
3APN
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BU of 3apn by Molmil
Crystal structure of the human wild-type PAD4 protein
分子名称: Protein-arginine deiminase type-4
著者Horikoshi, N, Tachiwana, H, Saito, K, Osakabe, A, Sato, M, Yamada, M, Akashi, S, Nishimura, Y, Kagawa, W, Kurumizaka, H.
登録日2010-10-19
公開日2011-01-26
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural and biochemical analyses of the human PAD4 variant encoded by a functional haplotype gene
Acta Crystallogr.,Sect.D, 67, 2011
2RNZ
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BU of 2rnz by Molmil
Solution structure of the presumed chromodomain of the yeast histone acetyltransferase, Esa1
分子名称: Histone acetyltransferase ESA1
著者Shimojo, H, Sano, N, Moriwaki, Y, Okuda, M, Horikoshi, M, Nishimura, Y.
登録日2008-03-01
公開日2008-04-29
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain
J.Mol.Biol., 378, 2008
2RVQ
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BU of 2rvq by Molmil
Solution structure of the isolated histone H2A-H2B heterodimer
分子名称: Histone H2A type 1-B/E, Histone H2B type 1-J
著者Moriwaki, Y, Yamane, T, Ohtomo, H, Ikeguchi, M, Kurita, J, Sato, M, Nagadoi, A, Shimojo, H, Nishimura, Y.
登録日2016-03-28
公開日2016-05-25
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structure of the isolated histone H2A-H2B heterodimer
Sci Rep, 6, 2016
2CZY
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BU of 2czy by Molmil
Solution structure of the NRSF/REST-mSin3B PAH1 complex
分子名称: Paired amphipathic helix protein Sin3b, transcription factor REST (version 3)
著者Nomura, M, Uda-Tochio, H, Murai, K, Mori, N, Nishimura, Y.
登録日2005-07-20
公開日2005-12-20
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献The Neural Repressor NRSF/REST Binds the PAH1 Domain of the Sin3 Corepressor by Using its Distinct Short Hydrophobic Helix
J.Mol.Biol., 354, 2005
1BHI
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BU of 1bhi by Molmil
STRUCTURE OF TRANSACTIVATION DOMAIN OF CRE-BP1/ATF-2, NMR, 20 STRUCTURES
分子名称: CRE-BP1
著者Nagadoi, A, Nakazawa, K, Uda, H, Maekawa, T, Ishii, S, Nishimura, Y.
登録日1998-06-09
公開日1999-06-15
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of the transactivation domain of ATF-2 comprising a zinc finger-like subdomain and a flexible subdomain.
J.Mol.Biol., 287, 1999
1BA5
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BU of 1ba5 by Molmil
DNA-BINDING DOMAIN OF HUMAN TELOMERIC PROTEIN, HTRF1, NMR, 18 STRUCTURES
分子名称: HTRF1
著者Nishikawa, T, Nagadoi, A, Yoshimura, S, Aimoto, S, Nishimura, Y.
登録日1998-04-22
公開日1999-04-27
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of the DNA-binding domain of human telomeric protein, hTRF1.
Structure, 6, 1998
2RO0
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BU of 2ro0 by Molmil
Solution structure of the knotted tudor domain of the yeast histone acetyltransferase, Esa1
分子名称: Histone acetyltransferase ESA1
著者Shimojo, H, Sano, N, Moriwaki, Y, Okuda, M, Horikoshi, M, Nishimura, Y.
登録日2008-03-01
公開日2008-04-29
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain
J.Mol.Biol., 378, 2008
5Y95
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BU of 5y95 by Molmil
Haddock model of mSIN3B PAH1 domain
分子名称: Paired amphipathic helix protein Sin3b, propan-2-yl (3R,6S,9aS)-3-ethyl-8-(3-methylbutyl)-6-(2-methylsulfanylethyl)-4,7-bis(oxidanylidene)-9,9a-dihydro-6H-pyrazino[2,1-c][1,2,4]oxadiazine-1-carboxylate
著者Kurita, J, Hirao, Y, Nishimura, Y.
登録日2017-08-22
公開日2017-10-04
最終更新日2025-03-12
実験手法SOLUTION NMR
主引用文献A mimetic of the mSin3-binding helix of NRSF/REST ameliorates abnormal pain behavior in chronic pain models.
Bioorg. Med. Chem. Lett., 27, 2017
2DY8
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BU of 2dy8 by Molmil
Solution structure of the second chromodomain of yeast Chd1
分子名称: Chromo domain protein 1
著者Okuda, M, Nishimura, Y.
登録日2006-09-07
公開日2006-11-28
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural Polymorphism of Chromodomains in Chd1
J.Mol.Biol., 365, 2007
2DY7
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BU of 2dy7 by Molmil
Solution structure of the first chromodomain of yeast Chd1
分子名称: Chromo domain protein 1
著者Okuda, M, Nishimura, Y.
登録日2006-09-07
公開日2006-11-28
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural Polymorphism of Chromodomains in Chd1
J.Mol.Biol., 365, 2007
2RSO
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BU of 2rso by Molmil
Solution structure of the chromodomain of Swi6
分子名称: Chromatin-associated protein swi6
著者Shimojo, H, Nishimura, Y.
登録日2012-04-18
公開日2012-08-29
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Intrinsic nucleic Acid-binding activity of chp1 chromodomain is required for heterochromatic gene silencing
Mol.Cell, 47, 2012
2RSN
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BU of 2rsn by Molmil
Solution structure of the chromodomain of Chp1 in complex with H3K9me3 peptide
分子名称: Chromo domain-containing protein 1, peptide from Histone H3
著者Shimojo, H, Nishimura, Y.
登録日2012-04-18
公開日2012-08-29
最終更新日2025-03-26
実験手法SOLUTION NMR
主引用文献Intrinsic nucleic Acid-binding activity of chp1 chromodomain is required for heterochromatic gene silencing
Mol.Cell, 47, 2012
2RNR
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BU of 2rnr by Molmil
Solution structure of the complex between TFIIE alpha C-terminal acidic domain and TFIIH p62 PH domain
分子名称: TFIIH basal transcription factor complex p62 subunit, Transcription initiation factor IIE subunit alpha
著者Okuda, M, Nishimura, Y.
登録日2008-01-31
公開日2008-04-01
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH
Embo J., 27, 2008
2RNQ
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BU of 2rnq by Molmil
Solution structure of the C-terminal acidic domain of TFIIE alpha
分子名称: Transcription initiation factor IIE subunit alpha
著者Okuda, M, Nishimura, Y.
登録日2008-01-31
公開日2008-04-01
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH
Embo J., 27, 2008
1FEX
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BU of 1fex by Molmil
SOLUTION STRUCTURE OF MYB-DOMAIN OF HUMAN RAP1
分子名称: TRF2-INTERACTING TELOMERIC RAP1 PROTEIN
著者Hanaoka, S, Nishimura, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2000-07-24
公開日2001-09-19
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献NMR structure of the hRap1 Myb motif reveals a canonical three-helix bundle lacking the positive surface charge typical of Myb DNA-binding domains.
J.Mol.Biol., 312, 2001
7DTI
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BU of 7dti by Molmil
Solution structure of the complex between RNA polymerase subunit RPB6 and TFIIH p62 PH domain
分子名称: DNA-directed RNA polymerases I, II, and III subunit RPABC2, ...
著者Okuda, M, Nishimura, Y.
登録日2021-01-05
公開日2022-08-10
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Three human RNA polymerases interact with TFIIH via a common RPB6 subunit.
Nucleic Acids Res., 50, 2022
7DTH
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BU of 7dth by Molmil
Solution structure of RPB6, common subunit of RNA polymerases I, II, and III
分子名称: DNA-directed RNA polymerases I, II, and III subunit RPABC2
著者Okuda, M, Nishimura, Y.
登録日2021-01-05
公開日2022-01-19
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Three human RNA polymerases interact with TFIIH via a common RPB6 subunit.
Nucleic Acids Res., 50, 2022
8I53
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BU of 8i53 by Molmil
Solution structure of the PH domain from the Tfb1 subunit of fission yeast TFIIH
分子名称: General transcription and DNA repair factor IIH subunit tfb1
著者Okuda, M, Nishimura, Y.
登録日2023-01-23
公開日2023-11-01
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural polymorphism of the PH domain in TFIIH.
Biosci.Rep., 43, 2023
2Z33
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BU of 2z33 by Molmil
Solution structure of the DNA complex of PhoB DNA-binding/transactivation Domain
分子名称: 5'-D(*AP*CP*AP*GP*AP*TP*TP*TP*AP*TP*GP*AP*CP*AP*GP*T)-3', 5'-D(*AP*CP*TP*GP*TP*CP*AP*TP*AP*AP*AP*TP*CP*TP*GP*T)-3', Phosphate regulon transcriptional regulatory protein phoB
著者Yamane, T, Okamura, H, Ikeguchi, M, Nishimura, Y, Kidera, A.
登録日2007-05-31
公開日2008-04-22
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Water-mediated interactions between DNA and PhoB DNA-binding/transactivation domain: NMR-restrained molecular dynamics in explicit water environment.
Proteins, 71, 2008
5GOW
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BU of 5gow by Molmil
Solution structure of the complex between DP1 acidic region and TFIIH p62 PH domain
分子名称: DP1, General transcription factor IIH subunit 1
著者Okuda, M, Nishimura, Y.
登録日2016-07-29
公開日2016-12-07
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献The Interaction Mode of the Acidic Region of the Cell Cycle Transcription Factor DP1 with TFIIH
J. Mol. Biol., 428, 2016
2RVM
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BU of 2rvm by Molmil
Solution structure of the chromodomain of HP1alpha with the phosphorylated N-terminal tail
分子名称: Chromobox protein homolog 5
著者Kawaguchi, A, Nishimura, Y.
登録日2015-12-18
公開日2016-03-16
最終更新日2024-10-30
実験手法SOLUTION NMR
主引用文献Extended string-like binding of the phosphorylated HP1 alpha N-terminal tail to the lysine 9-methylated histone H3 tail
Sci Rep, 6, 2016
2RVB
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BU of 2rvb by Molmil
Solution structure of the complex between XPC acidic domain and TFIIH p62 PH domain
分子名称: DNA repair protein complementing XP-C cells, General transcription factor IIH subunit 1
著者Okuda, M, Nishimura, Y.
登録日2015-07-01
公開日2015-09-09
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural Insight into the Mechanism of TFIIH Recognition by the Acidic String of the Nucleotide Excision Repair Factor XPC.
Structure, 23, 2015

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