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Solution structure of the presumed chromodomain of the yeast histone acetyltransferase, Esa1
分子名称:	Histone acetyltransferase ESA1
著者	Shimojo, H, Sano, N, Moriwaki, Y, Okuda, M, Horikoshi, M, Nishimura, Y.
登録日	2008-03-01
公開日	2008-04-29
最終更新日	2024-05-29
実験手法	SOLUTION NMR
主引用文献	Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain J.Mol.Biol., 378, 2008

2RVQ

Solution structure of the isolated histone H2A-H2B heterodimer
分子名称:	Histone H2A type 1-B/E, Histone H2B type 1-J
著者	Moriwaki, Y, Yamane, T, Ohtomo, H, Ikeguchi, M, Kurita, J, Sato, M, Nagadoi, A, Shimojo, H, Nishimura, Y.
登録日	2016-03-28
公開日	2016-05-25
最終更新日	2024-05-01
実験手法	SOLUTION NMR
主引用文献	Solution structure of the isolated histone H2A-H2B heterodimer Sci Rep, 6, 2016

2RNQ

Solution structure of the C-terminal acidic domain of TFIIE alpha
分子名称:	Transcription initiation factor IIE subunit alpha
著者	Okuda, M, Nishimura, Y.
登録日	2008-01-31
公開日	2008-04-01
最終更新日	2024-05-29
実験手法	SOLUTION NMR
主引用文献	Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH Embo J., 27, 2008

2RSO

Solution structure of the chromodomain of Swi6
分子名称:	Chromatin-associated protein swi6
著者	Shimojo, H, Nishimura, Y.
登録日	2012-04-18
公開日	2012-08-29
最終更新日	2024-05-15
実験手法	SOLUTION NMR
主引用文献	Intrinsic nucleic Acid-binding activity of chp1 chromodomain is required for heterochromatic gene silencing Mol.Cell, 47, 2012

2RNR

Solution structure of the complex between TFIIE alpha C-terminal acidic domain and TFIIH p62 PH domain
分子名称:	TFIIH basal transcription factor complex p62 subunit, Transcription initiation factor IIE subunit alpha
著者	Okuda, M, Nishimura, Y.
登録日	2008-01-31
公開日	2008-04-01
最終更新日	2024-05-29
実験手法	SOLUTION NMR
主引用文献	Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH Embo J., 27, 2008

2RSN

Solution structure of the chromodomain of Chp1 in complex with H3K9me3 peptide
分子名称:	Chromo domain-containing protein 1, peptide from Histone H3
著者	Shimojo, H, Nishimura, Y.
登録日	2012-04-18
公開日	2012-08-29
実験手法	SOLUTION NMR
主引用文献	Intrinsic nucleic Acid-binding activity of chp1 chromodomain is required for heterochromatic gene silencing Mol.Cell, 47, 2012

1BA5

DNA-BINDING DOMAIN OF HUMAN TELOMERIC PROTEIN, HTRF1, NMR, 18 STRUCTURES
分子名称:	HTRF1
著者	Nishikawa, T, Nagadoi, A, Yoshimura, S, Aimoto, S, Nishimura, Y.
登録日	1998-04-22
公開日	1999-04-27
最終更新日	2024-05-22
実験手法	SOLUTION NMR
主引用文献	Solution structure of the DNA-binding domain of human telomeric protein, hTRF1. Structure, 6, 1998

1BHI

STRUCTURE OF TRANSACTIVATION DOMAIN OF CRE-BP1/ATF-2, NMR, 20 STRUCTURES
分子名称:	CRE-BP1
著者	Nagadoi, A, Nakazawa, K, Uda, H, Maekawa, T, Ishii, S, Nishimura, Y.
登録日	1998-06-09
公開日	1999-06-15
最終更新日	2024-05-22
実験手法	SOLUTION NMR
主引用文献	Solution structure of the transactivation domain of ATF-2 comprising a zinc finger-like subdomain and a flexible subdomain. J.Mol.Biol., 287, 1999

1FEX

SOLUTION STRUCTURE OF MYB-DOMAIN OF HUMAN RAP1
分子名称:	TRF2-INTERACTING TELOMERIC RAP1 PROTEIN
著者	Hanaoka, S, Nishimura, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2000-07-24
公開日	2001-09-19
最終更新日	2024-05-22
実験手法	SOLUTION NMR
主引用文献	NMR structure of the hRap1 Myb motif reveals a canonical three-helix bundle lacking the positive surface charge typical of Myb DNA-binding domains. J.Mol.Biol., 312, 2001

5XV8

Solution structure of the complex between UVSSA acidic region and TFIIH p62 PH domain
分子名称:	General transcription factor IIH subunit 1, UV-stimulated scaffold protein A
著者	Okuda, M, Nishimura, Y.
登録日	2017-06-27
公開日	2017-11-08
最終更新日	2024-05-01
実験手法	SOLUTION NMR
主引用文献	Common TFIIH recruitment mechanism in global genome and transcription-coupled repair subpathways Nucleic Acids Res., 45, 2017

1PRU

PURINE REPRESSOR DNA-BINDING DOMAIN DNA BINDING
分子名称:	PURINE REPRESSOR
著者	Nagadoi, A, Morikawa, S, Nakamura, H, Enari, M, Kobayashi, K, Yamamoto, H, Sampei, G, Mizobuchi, K, Schumacher, M.A, Brennan, R.G, Nishimura, Y.
登録日	1995-05-08
公開日	1996-03-08
最終更新日	2024-05-01
実験手法	SOLUTION NMR
主引用文献	Structural comparison of the free and DNA-bound forms of the purine repressor DNA-binding domain. Structure, 3, 1995

1PRV

PURINE REPRESSOR DNA-BINDING DOMAIN DNA BINDING
分子名称:	PURINE REPRESSOR
著者	Nagadoi, A, Morikawa, S, Nakamura, H, Enari, M, Kobayashi, K, Yamamoto, H, Sampei, G, Mizobuchi, K, Schumacher, M.A, Brennan, R.G, Nishimura, Y.
登録日	1995-05-08
公開日	1996-03-08
最終更新日	2024-05-01
実験手法	SOLUTION NMR
主引用文献	Structural comparison of the free and DNA-bound forms of the purine repressor DNA-binding domain. Structure, 3, 1995

1QQI

SOLUTION STRUCTURE OF THE DNA-BINDING AND TRANSACTIVATION DOMAIN OF PHOB FROM ESCHERICHIA COLI
分子名称:	PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN PHOB
著者	Okamura, H, Hanaoka, S, Nagadoi, A, Makino, K, Nishimura, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	1999-06-07
公開日	2000-06-07
最終更新日	2024-05-22
実験手法	SOLUTION NMR
主引用文献	Structural comparison of the PhoB and OmpR DNA-binding/transactivation domains and the arrangement of PhoB molecules on the phosphate box. J.Mol.Biol., 295, 2000

2CZY

Solution structure of the NRSF/REST-mSin3B PAH1 complex
分子名称:	Paired amphipathic helix protein Sin3b, transcription factor REST (version 3)
著者	Nomura, M, Uda-Tochio, H, Murai, K, Mori, N, Nishimura, Y.
登録日	2005-07-20
公開日	2005-12-20
最終更新日	2024-05-29
実験手法	SOLUTION NMR
主引用文献	The Neural Repressor NRSF/REST Binds the PAH1 Domain of the Sin3 Corepressor by Using its Distinct Short Hydrophobic Helix J.Mol.Biol., 354, 2005

7DTI

Solution structure of the complex between RNA polymerase subunit RPB6 and TFIIH p62 PH domain
分子名称:	DNA-directed RNA polymerases I, II, and III subunit RPABC2, ...
著者	Okuda, M, Nishimura, Y.
登録日	2021-01-05
公開日	2022-08-10
最終更新日	2024-05-15
実験手法	SOLUTION NMR
主引用文献	Three human RNA polymerases interact with TFIIH via a common RPB6 subunit. Nucleic Acids Res., 50, 2022

7DTH

Solution structure of RPB6, common subunit of RNA polymerases I, II, and III
分子名称:	DNA-directed RNA polymerases I, II, and III subunit RPABC2
著者	Okuda, M, Nishimura, Y.
登録日	2021-01-05
公開日	2022-01-19
最終更新日	2024-05-15
実験手法	SOLUTION NMR
主引用文献	Three human RNA polymerases interact with TFIIH via a common RPB6 subunit. Nucleic Acids Res., 50, 2022

2RVM

Solution structure of the chromodomain of HP1alpha with the phosphorylated N-terminal tail
分子名称:	Chromobox protein homolog 5
著者	Kawaguchi, A, Nishimura, Y.
登録日	2015-12-18
公開日	2016-03-16
最終更新日	2024-10-30
実験手法	SOLUTION NMR
主引用文献	Extended string-like binding of the phosphorylated HP1 alpha N-terminal tail to the lysine 9-methylated histone H3 tail Sci Rep, 6, 2016

2RVB

Solution structure of the complex between XPC acidic domain and TFIIH p62 PH domain
分子名称:	DNA repair protein complementing XP-C cells, General transcription factor IIH subunit 1
著者	Okuda, M, Nishimura, Y.
登録日	2015-07-01
公開日	2015-09-09
最終更新日	2024-05-01
実験手法	SOLUTION NMR
主引用文献	Structural Insight into the Mechanism of TFIIH Recognition by the Acidic String of the Nucleotide Excision Repair Factor XPC. Structure, 23, 2015

2RUK

Solution structure of the complex between p53 transactivation domain 2 and TFIIH p62 PH domain
分子名称:	Cellular tumor antigen p53, General transcription factor IIH subunit 1
著者	Okuda, M, Nishimura, Y.
登録日	2014-09-24
公開日	2014-10-15
最終更新日	2024-10-16
実験手法	SOLUTION NMR
主引用文献	Extended string binding mode of the phosphorylated transactivation domain of tumor suppressor p53. J.Am.Chem.Soc., 136, 2014

2RVN

Solution structure of the chromodomain of HP1a with the phosphorylated N-terminal tail complexed with H3K9me3 peptide
分子名称:	18-mer peptide of Histone H3, Chromobox protein homolog 5
著者	Kawaguchi, A, Nishimura, Y.
登録日	2015-12-18
公開日	2016-03-16
実験手法	SOLUTION NMR
主引用文献	Extended string-like binding of the phosphorylated HP1 alpha N-terminal tail to the lysine 9-methylated histone H3 tail Sci Rep, 6, 2016

2RVL

Solution structure of the chromodomain of HP1alpha with the N-terminal tail
分子名称:	Chromobox protein homolog 5
著者	Kawaguchi, A, Nishimura, Y.
登録日	2015-12-18
公開日	2016-03-16
最終更新日	2024-05-15
実験手法	SOLUTION NMR
主引用文献	Extended string-like binding of the phosphorylated HP1 alpha N-terminal tail to the lysine 9-methylated histone H3 tail Sci Rep, 6, 2016

2DY8

Solution structure of the second chromodomain of yeast Chd1
分子名称:	Chromo domain protein 1
著者	Okuda, M, Nishimura, Y.
登録日	2006-09-07
公開日	2006-11-28
最終更新日	2024-05-29
実験手法	SOLUTION NMR
主引用文献	Structural Polymorphism of Chromodomains in Chd1 J.Mol.Biol., 365, 2007

2DY7

Solution structure of the first chromodomain of yeast Chd1
分子名称:	Chromo domain protein 1
著者	Okuda, M, Nishimura, Y.
登録日	2006-09-07
公開日	2006-11-28
最終更新日	2024-05-29
実験手法	SOLUTION NMR
主引用文献	Structural Polymorphism of Chromodomains in Chd1 J.Mol.Biol., 365, 2007

8I53

Solution structure of the PH domain from the Tfb1 subunit of fission yeast TFIIH
分子名称:	General transcription and DNA repair factor IIH subunit tfb1
著者	Okuda, M, Nishimura, Y.
登録日	2023-01-23
公開日	2023-11-01
最終更新日	2024-05-15
実験手法	SOLUTION NMR
主引用文献	Structural polymorphism of the PH domain in TFIIH. Biosci.Rep., 43, 2023

5GOW

Solution structure of the complex between DP1 acidic region and TFIIH p62 PH domain
分子名称:	DP1, General transcription factor IIH subunit 1
著者	Okuda, M, Nishimura, Y.
登録日	2016-07-29
公開日	2016-12-07
最終更新日	2024-05-01
実験手法	SOLUTION NMR
主引用文献	The Interaction Mode of the Acidic Region of the Cell Cycle Transcription Factor DP1 with TFIIH J. Mol. Biol., 428, 2016

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