Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5GR3
DownloadVisualize
BU of 5gr3 by Molmil
Crystal structure of branching enzyme L541A/W655A mutant from Cyanothece sp. ATCC 51142
分子名称: 1,4-alpha-glucan branching enzyme GlgB, GLYCEROL, MAGNESIUM ION
著者Suzuki, R, Suzuki, E.
登録日2016-08-08
公開日2017-08-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis for substrate binding and catalysis of branching enzyme from Cyanothece sp. ATCC 51142
To be published
5GQU
DownloadVisualize
BU of 5gqu by Molmil
Crystal structure of branching enzyme from Cyanothece sp. ATCC 51142
分子名称: 1,4-alpha-glucan branching enzyme GlgB, GLYCEROL, MAGNESIUM ION
著者Suzuki, R, Suzuki, E.
登録日2016-08-08
公開日2017-02-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Bound Substrate in the Structure of Cyanobacterial Branching Enzyme Supports a New Mechanistic Model
J. Biol. Chem., 292, 2017
5GR6
DownloadVisualize
BU of 5gr6 by Molmil
Crystal structure of branching enzyme Y500A/D501A double mutant from Cyanothece sp. ATCC 51142
分子名称: 1,4-alpha-glucan branching enzyme GlgB, GLYCEROL, MAGNESIUM ION
著者Suzuki, R, Suzuki, E.
登録日2016-08-08
公開日2017-08-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis for substrate binding and catalysis of branching enzyme from Cyanothece sp. ATCC 51142
To be published
5KZ7
DownloadVisualize
BU of 5kz7 by Molmil
Mark2 complex with 7-[(1S)-1-(4-fluorophenyl)ethyl]-5,5-dimethyl-2-(3-pyridylamino)pyrrolo[2,3-d]pyrimidin-6-one
分子名称: 7-[(1~{S})-1-(4-fluorophenyl)ethyl]-5,5-dimethyl-2-(pyridin-3-ylamino)pyrrolo[2,3-d]pyrimidin-6-one, Serine/threonine-protein kinase MARK2
著者Su, H.P, Munshi, S.K.
登録日2016-07-23
公開日2017-05-31
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structure guided design of a series of selective pyrrolopyrimidinone MARK inhibitors.
Bioorg. Med. Chem. Lett., 27, 2017
8H78
DownloadVisualize
BU of 8h78 by Molmil
Crystal structure of human MMP-2 catalytic domain in complex with inhibitor
分子名称: (2~{R})-2-[[4-[(4-aminocarbonylphenyl)carbonylamino]phenyl]sulfonylamino]-5-[(2~{S},4~{S})-4-azanyl-2-[[(2~{S})-1-[[(2~{S})-1-[(5-azanyl-5-oxidanylidene-pentyl)amino]-5-oxidanyl-1,5-bis(oxidanylidene)pentan-2-yl]-methyl-amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamoyl]pyrrolidin-1-yl]-5-oxidanylidene-pentanoic acid, CALCIUM ION, DIHYDROGENPHOSPHATE ION, ...
著者Kamitani, M, Takeuchi, T, Mima, M.
登録日2022-10-19
公開日2023-01-18
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Discovery of TP0597850: A Selective, Chemically Stable, and Slow Tight-Binding Matrix Metalloproteinase-2 Inhibitor with a Phenylbenzamide-Pentapeptide Hybrid Scaffold.
J.Med.Chem., 66, 2023
8HPK
DownloadVisualize
BU of 8hpk by Molmil
Crystal structure of the bacterial oxalate transporter OxlT in an oxalate-bound occluded form
分子名称: Fab fragment Heavy chein, Fab fragment Light chain, OXALATE ION, ...
著者Shimamura, T, Hirai, T, Yamashita, A.
登録日2022-12-12
公開日2023-02-15
最終更新日2023-04-12
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure and mechanism of oxalate transporter OxlT in an oxalate-degrading bacterium in the gut microbiota.
Nat Commun, 14, 2023
8HPJ
DownloadVisualize
BU of 8hpj by Molmil
Crystal structure of the bacterial oxalate transporter OxlT in a ligand-free outward-facing form
分子名称: Fv fragment Heavy chain, Fv fragment Light chain, Oxalate:formate antiporter
著者Shimamura, T, Hirai, T, Yamashita, A.
登録日2022-12-12
公開日2023-02-15
最終更新日2023-04-12
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structure and mechanism of oxalate transporter OxlT in an oxalate-degrading bacterium in the gut microbiota.
Nat Commun, 14, 2023
1AL0
DownloadVisualize
BU of 1al0 by Molmil
PROCAPSID OF BACTERIOPHAGE PHIX174
分子名称: CAPSID PROTEIN GPF, SCAFFOLDING PROTEIN GPB, SCAFFOLDING PROTEIN GPD, ...
著者Rossmann, M.G, Dokland, T.
登録日1997-06-06
公開日1998-01-28
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Structure of a viral procapsid with molecular scaffolding.
Nature, 389, 1997
5KZ8
DownloadVisualize
BU of 5kz8 by Molmil
Mark2 complex with 7-[(1S)-1-(4-fluorophenyl)ethyl]-5,5-dimethyl-2-(3-pyridylamino)pyrrolo[2,3-d]pyrimidin-6-one
分子名称: 5,5-dimethyl-7-[(1~{S})-4-oxidanyl-1~{H}-inden-1-yl]-2-phenylazanyl-pyrrolo[2,3-d]pyrimidin-6-one, Serine/threonine-protein kinase MARK2
著者Su, H.P, Munshi, S.K.
登録日2016-07-23
公開日2017-05-31
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (3.21 Å)
主引用文献Structure guided design of a series of selective pyrrolopyrimidinone MARK inhibitors.
Bioorg. Med. Chem. Lett., 27, 2017
6TIS
DownloadVisualize
BU of 6tis by Molmil
DROSOPHILA GDP-TUBULIN
分子名称: GLYCEROL, GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Gigant, B.
登録日2019-11-22
公開日2021-01-27
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献GTP-dependent formation of straight tubulin oligomers leads to microtubule nucleation.
J.Cell Biol., 220, 2021
6TIZ
DownloadVisualize
BU of 6tiz by Molmil
DROSOPHILA GDP-TUBULIN Y222F MUTANT
分子名称: GLYCEROL, GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Gigant, B.
登録日2019-11-22
公開日2021-01-27
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.197 Å)
主引用文献GTP-dependent formation of straight tubulin oligomers leads to microtubule nucleation.
J.Cell Biol., 220, 2021
6TIU
DownloadVisualize
BU of 6tiu by Molmil
DROSOPHILA GTP-TUBULIN Y222F MUTANT
分子名称: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Gigant, B.
登録日2019-11-22
公開日2021-01-27
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.571 Å)
主引用文献GTP-dependent formation of straight tubulin oligomers leads to microtubule nucleation.
J.Cell Biol., 220, 2021
6TIY
DownloadVisualize
BU of 6tiy by Molmil
DROSOPHILA GMPCPP-TUBULIN
分子名称: GLYCEROL, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Gigant, B.
登録日2019-11-22
公開日2021-01-27
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.293 Å)
主引用文献GTP-dependent formation of straight tubulin oligomers leads to microtubule nucleation.
J.Cell Biol., 220, 2021
3EY4
DownloadVisualize
BU of 3ey4 by Molmil
Further studies with the 2-amino-1,3-thiazol-4(5H)-one class of 11-hydroxysteroid dehydrogenase type 1 (11-HSD1) inhibitors: Reducing pregnane X receptor (PXR) activity and exploring activity in a monkey pharmacodynamic model
分子名称: (5S)-2-{[(1S)-1-(4-fluorophenyl)ethyl]amino}-5-(1-hydroxy-1-methylethyl)-5-methyl-1,3-thiazol-4(5H)-one, 11-beta-Hydroxysteroid Dehydrogenase 1, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Zhang, J.D, Jordan, S.R, Li, V.
登録日2008-10-17
公開日2008-11-11
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Further studies with the 2-amino-1,3-thiazol-4(5H)-one class of 11-hydroxysteroid dehydrogenase type 1 (11-HSD1) inhibitors: Reducing pregnane X receptor (PXR) activity and exploring activity in a monkey pharmacodynamic model
To be Published, 2008
8GR9
DownloadVisualize
BU of 8gr9 by Molmil
Crystal structure of peroxisomal citrate synthase (Cit2) from Saccharomyces cerevisiae in complex with oxaloacetate and coenzyme-A
分子名称: CHLORIDE ION, COENZYME A, Citrate synthase, ...
著者Nishio, K, Nakatsukasa, K, Kamura, T, Mizushima, T.
登録日2022-09-01
公開日2023-04-26
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress.
Sci Adv, 9, 2023
8GR8
DownloadVisualize
BU of 8gr8 by Molmil
Crystal structure of peroxisomal citrate synthase (Cit2) from Saccharomycescerevisiae
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, Citrate synthase, ...
著者Nishio, K, Nakatsukasa, K, Kamura, T, Mizushima, T.
登録日2022-09-01
公開日2023-04-26
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.39 Å)
主引用文献Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress.
Sci Adv, 9, 2023
8GRE
DownloadVisualize
BU of 8gre by Molmil
F-box protein in complex with skp1(FL) and substrate
分子名称: Citrate synthase, E3 ubiquitin ligase complex SCF subunit, F-box protein UCC1, ...
著者Nishio, K, Nakatsukasa, K, Kamura, T, Mizushima, T.
登録日2022-09-01
公開日2023-04-26
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress.
Sci Adv, 9, 2023
8GQZ
DownloadVisualize
BU of 8gqz by Molmil
Crystal structure of mitochondrial citrate synthase (Cit1) from Saccharomyces cerevisiae
分子名称: ACETATE ION, CHLORIDE ION, Citrate synthase, ...
著者Nishio, K, Nakatsukasa, K, Kamura, T, Mizushima, T.
登録日2022-08-31
公開日2023-04-26
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress.
Sci Adv, 9, 2023
8GRF
DownloadVisualize
BU of 8grf by Molmil
Crystal structure of F-box protein in the ternary complex with adaptor protein Skp1(DL) and its substrate
分子名称: 1,2-ETHANEDIOL, Citrate synthase, E3 ubiquitin ligase complex SCF subunit, ...
著者Nishio, K, Nakatsukasa, K, Kamura, T, Mizushima, T.
登録日2022-09-01
公開日2023-04-26
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.53 Å)
主引用文献Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress.
Sci Adv, 9, 2023
1GFF
DownloadVisualize
BU of 1gff by Molmil
THE ATOMIC STRUCTURE OF THE DEGRADED PROCAPSID PARTICLE OF THE BACTERIOPHAGE G4: INDUCED STRUCTURAL CHANGES IN THE PRESENCE OF CALCIUM IONS AND FUNCTIONAL IMPLICATIONS
分子名称: BACTERIOPHAGE G4 CAPSID PROTEINS GPF, GPG, GPJ
著者Rossmann, M.G.
登録日1995-11-06
公開日1996-04-03
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Atomic structure of the degraded procapsid particle of the bacteriophage G4: induced structural changes in the presence of calcium ions and functional implications.
J.Mol.Biol., 256, 1996
5EAK
DownloadVisualize
BU of 5eak by Molmil
Optimization of Microtubule Affinity Regulating Kinase (MARK) Inhibitors with Improved Physical Properties
分子名称: N-[(1S,2R)-2-aminocyclohexyl]-4-[6-(1-methyl-1H-pyrazol-4-yl)pyrazolo[1,5-a]pyrimidin-3-yl]thiophene-2-carboxamide, Serine/threonine-protein kinase MARK2
著者Su, H.P.
登録日2015-10-16
公開日2016-02-17
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Optimization of microtubule affinity regulating kinase (MARK) inhibitors with improved physical properties.
Bioorg.Med.Chem.Lett., 26, 2016
7XJO
DownloadVisualize
BU of 7xjo by Molmil
Crystal structure of human MMP-2 catalytic domain in complex with inhibitor
分子名称: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, CHLORIDE ION, ...
著者Kamitani, M, Mima, M, Takeuchi, T.
登録日2022-04-18
公開日2022-06-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Discovery of Aryloxyphenyl-Heptapeptide Hybrids as Potent and Selective Matrix Metalloproteinase-2 Inhibitors for the Treatment of Idiopathic Pulmonary Fibrosis.
J.Med.Chem., 65, 2022
7XGJ
DownloadVisualize
BU of 7xgj by Molmil
Crystal structure of human MMP-2 catalytic domain in complex with inhibitor
分子名称: CALCIUM ION, GZS-ASN-ASP-ALA-LEU-IML-EOE-NH2, Matrix metalloproteinase-2, ...
著者Kamitani, M, Mima, M, Takeuchi, T.
登録日2022-04-05
公開日2022-06-29
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Discovery of Aryloxyphenyl-Heptapeptide Hybrids as Potent and Selective Matrix Metalloproteinase-2 Inhibitors for the Treatment of Idiopathic Pulmonary Fibrosis.
J.Med.Chem., 65, 2022
6KLF
DownloadVisualize
BU of 6klf by Molmil
Crystal structure of branching enzyme D434A mutant from Cyanothece sp. ATCC 51142
分子名称: 1,4-alpha-glucan branching enzyme GlgB, GLYCEROL, MAGNESIUM ION
著者Suzuki, R, Suzuki, E.
登録日2019-07-30
公開日2020-08-05
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Cyanobacterial branching enzymes bind to alpha-glucan via surface binding sites
Arch.Biochem.Biophys., 702, 2021
1FIY
DownloadVisualize
BU of 1fiy by Molmil
THREE-DIMENSIONAL STRUCTURE OF PHOSPHOENOLPYRUVATE CARBOXYLASE FROM ESCHERICHIA COLI AT 2.8 A RESOLUTION
分子名称: ASPARTIC ACID, PHOSPHOENOLPYRUVATE CARBOXYLASE
著者Kai, Y, Matsumura, H, Inoue, T, Terada, K, Nagara, Y, Yoshinaga, T, Kihara, A, Izui, K.
登録日1998-05-02
公開日1999-02-09
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Three-dimensional structure of phosphoenolpyruvate carboxylase: a proposed mechanism for allosteric inhibition.
Proc.Natl.Acad.Sci.USA, 96, 1999

224572

件を2024-09-04に公開中

PDB statisticsPDBj update infoContact PDBjnumon